BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0085.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777074.1| integration host factor subunit beta [Herbas...   203   8e-51
ref|YP_004754394.1| integration host factor subunit beta [Collim...   201   4e-50
ref|YP_001100816.1| integration host factor subunit beta [Hermin...   196   7e-49
ref|ZP_08274482.1| Integration host factor beta subunit [Oxaloba...   179   2e-43
ref|ZP_02467909.1| integration host factor subunit beta [Burkhol...   168   2e-40

>ref|YP_003777074.1| integration host factor subunit beta [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65166.1| integration host factor beta-subunit (IHF-beta) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 101

 Score =  203 bits (516), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 101/101 (100%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIKED 101
           GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPI+ED
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101


>ref|YP_004754394.1| integration host factor subunit beta [Collimonas fungivorans
           Ter331]
 gb|AEK63571.1| Integration host factor beta subunit [Collimonas fungivorans
           Ter331]
          Length = 101

 Score =  201 bits (510), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/101 (97%), Positives = 100/101 (99%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           MTKSELIARLAERYPQLVAKDADYAVKTILDAM DAL+TGQRIEIRGFGSFALNRRPPRI
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMADALSTGQRIEIRGFGSFALNRRPPRI 60

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIKED 101
           GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPI+ED
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101


>ref|YP_001100816.1| integration host factor subunit beta [Herminiimonas arsenicoxydans]
 ref|YP_001354357.1| integration host factor subunit beta [Janthinobacterium sp.
           Marseille]
 sp|A4G858.1|IHFB_HERAR RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 sp|A6T1G0.1|IHFB_JANMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 emb|CAL62695.1| Integration host factor subunit beta (IHF-beta) [Herminiimonas
           arsenicoxydans]
 gb|ABR89250.1| integration host factor beta-subunit [Janthinobacterium sp.
           Marseille]
          Length = 101

 Score =  196 bits (499), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/101 (96%), Positives = 98/101 (97%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           MTKSELIARLAERYPQLVAKDADYAVKTILDAM DALATGQRIEIRGFGSFALN RPPRI
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIKED 101
           GRNPKSGDKVMVPEKRVPHFKPGK+LRERVDAMVGQPI ED
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKQLRERVDAMVGQPIIED 101


>ref|ZP_08274482.1| Integration host factor beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32042.1| Integration host factor beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 92

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/92 (93%), Positives = 90/92 (97%)

Query: 10  LAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRIGRNPKSGDK 69
           +AERYPQLVAKDADYAVKTILDAM+DALATGQRIEIRGFGSF+LN RPPRIGRNPKSG+K
Sbjct: 1   MAERYPQLVAKDADYAVKTILDAMIDALATGQRIEIRGFGSFSLNSRPPRIGRNPKSGEK 60

Query: 70  VMVPEKRVPHFKPGKELRERVDAMVGQPIKED 101
           VMVPEKRVPHFKPGKELRERVDAMVGQPI ED
Sbjct: 61  VMVPEKRVPHFKPGKELRERVDAMVGQPIIED 92


>ref|ZP_02467909.1| integration host factor subunit beta [Burkholderia thailandensis
           MSMB43]
          Length = 107

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 89/101 (88%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           MTKSEL+A+LA R+PQLV KDAD+AVKT+LDAM DAL+ G RIEIRGFGSF LNRRP R+
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIKED 101
           GRNPKSG+KV VPEKRVPHFKPGKELRERVD   G+P+K D
Sbjct: 61  GRNPKSGEKVQVPEKRVPHFKPGKELRERVDGRAGEPLKND 101