BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0075.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753462.1| DNA polymerase III subunits gamma and tau [C... 710 0.0 ref|YP_003777067.1| DNA polymerase III subunit gamma/tau [Herbas... 704 0.0 ref|YP_001099352.1| DNA polymerase III subunit tau/gamma [Hermin... 699 0.0 ref|YP_001354020.1| DNA polymerase III gamma and tau subunit [Ja... 699 0.0 ref|YP_584277.1| DNA polymerase III subunits gamma and tau [Cupr... 628 e-178 >ref|YP_004753462.1| DNA polymerase III subunits gamma and tau [Collimonas fungivorans Ter331] gb|AEK62639.1| DNA polymerase III subunits gamma and tau [Collimonas fungivorans Ter331] Length = 703 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/373 (91%), Positives = 356/373 (95%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCQGPDGNGGITAQPCGVCDACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 SLNC G DG GGITA PCGVC+ACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP Sbjct: 61 SLNCIGADGTGGITATPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL Sbjct: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 181 KQMPPGHIISHLDNILGQENIEFEAPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLE 240 KQMPPGHIISHLDNILGQE IEFE PALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLE Sbjct: 181 KQMPPGHIISHLDNILGQEQIEFETPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLE 240 Query: 241 AVQGMLGALDQSYLIRVLDALAAQDGSGLLAVADEMATRSLSYNAALQDLATLLHQIALA 300 AVQGMLGALDQSYLIRVLDALAA+DG GLLAVAD+MA+RSLSY+AALQDL TLLH+IALA Sbjct: 241 AVQGMLGALDQSYLIRVLDALAAKDGPGLLAVADDMASRSLSYSAALQDLGTLLHRIALA 300 Query: 301 QTVPAALAEDLPQREDIVRLASQFSAEEAQLFYQIVVHGRNELGLAPDEYAGFSMTLLRM 360 Q+VPAALA+DLP+RE+++RL+ F AEE QLFYQI VHGRNELGLAPDEYAGFSMTLLRM Sbjct: 301 QSVPAALADDLPEREEVIRLSGLFDAEEIQLFYQIAVHGRNELGLAPDEYAGFSMTLLRM 360 Query: 361 LAFRPVAANAAAA 373 LAFRP A + AA Sbjct: 361 LAFRPQADGSIAA 373 >ref|YP_003777067.1| DNA polymerase III subunit gamma/tau [Herbaspirillum seropedicae SmR1] gb|ADJ65159.1| DNA polymerase III (subunits tau and gamma) protein [Herbaspirillum seropedicae SmR1] Length = 712 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/370 (91%), Positives = 352/370 (95%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCQGPDGNGGITAQPCGVCDACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 SLNC GPDG GGITA PCGVC+ACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQA+YAP Sbjct: 61 SLNCVGPDGAGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 SNARFKVYMIDEVHMLTNHAFN+MLKTLEEPPEH+KFILATTDPQKIPVTVLSRCLQFNL Sbjct: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 181 KQMPPGHIISHLDNILGQENIEFEAPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLE 240 KQMPPGHII HLDNIL QE IEF+APALRLLAQGA GSMRDALSLTDQAIAYAAGKVTLE Sbjct: 181 KQMPPGHIIGHLDNILNQEGIEFDAPALRLLAQGASGSMRDALSLTDQAIAYAAGKVTLE 240 Query: 241 AVQGMLGALDQSYLIRVLDALAAQDGSGLLAVADEMATRSLSYNAALQDLATLLHQIALA 300 AVQGMLGALDQSYLIR+LDALA QDG+ LL VAD+MATRSLSYNAALQDL TLLHQIALA Sbjct: 241 AVQGMLGALDQSYLIRILDALAVQDGAALLGVADDMATRSLSYNAALQDLGTLLHQIALA 300 Query: 301 QTVPAALAEDLPQREDIVRLASQFSAEEAQLFYQIVVHGRNELGLAPDEYAGFSMTLLRM 360 Q VPAALA+DLP REDI+RL+ QFS E QLFYQI VHGRNELGLAPDEYAGFSMTLLRM Sbjct: 301 QAVPAALADDLPNREDILRLSGQFSPEHVQLFYQIAVHGRNELGLAPDEYAGFSMTLLRM 360 Query: 361 LAFRPVAANA 370 LAFRPV+A+A Sbjct: 361 LAFRPVSASA 370 >ref|YP_001099352.1| DNA polymerase III subunit tau/gamma [Herminiimonas arsenicoxydans] emb|CAL61225.1| DNA polymerase III subunit tau [Contains: DNA polymerase III subunit gamma] [Herminiimonas arsenicoxydans] Length = 682 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/365 (91%), Positives = 351/365 (96%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARKYRP+SFDTLVGQEHVVRALTHALE +RLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKYRPKSFDTLVGQEHVVRALTHALENKRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCQGPDGNGGITAQPCGVCDACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 S NC GPDGNG ITA PCGVC+ACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP Sbjct: 61 SFNCIGPDGNGDITATPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL Sbjct: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 181 KQMPPGHIISHLDNILGQENIEFEAPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLE 240 KQMPPGHI++HLD+ILGQE IEFE PALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLE Sbjct: 181 KQMPPGHIVAHLDDILGQEQIEFETPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLE 240 Query: 241 AVQGMLGALDQSYLIRVLDALAAQDGSGLLAVADEMATRSLSYNAALQDLATLLHQIALA 300 AVQGMLGALDQS+LIR+LDALA +DG+GLLAVADEMATRSLSYNAALQDL +LLH+IALA Sbjct: 241 AVQGMLGALDQSFLIRLLDALAQKDGAGLLAVADEMATRSLSYNAALQDLGSLLHRIALA 300 Query: 301 QTVPAALAEDLPQREDIVRLASQFSAEEAQLFYQIVVHGRNELGLAPDEYAGFSMTLLRM 360 QTVPAAL +DLP+R+D++RLA+ F AEE QLFYQI VHGRNELGLAPDEYAGFSMTLLRM Sbjct: 301 QTVPAALPDDLPERDDVLRLAALFDAEEIQLFYQIAVHGRNELGLAPDEYAGFSMTLLRM 360 Query: 361 LAFRP 365 LAFRP Sbjct: 361 LAFRP 365 >ref|YP_001354020.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp. Marseille] gb|ABR88343.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp. Marseille] Length = 673 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/365 (91%), Positives = 350/365 (95%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARKYRP+SFDTLVGQEHVVRALTHAL+ QRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKYRPKSFDTLVGQEHVVRALTHALDNQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCQGPDGNGGITAQPCGVCDACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 S NC GPDGNGGIT+ PCGVC+ACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP Sbjct: 61 SFNCVGPDGNGGITSTPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL Sbjct: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 181 KQMPPGHIISHLDNILGQENIEFEAPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLE 240 KQMPPGHI+SHLDNILGQENIEFE PALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTL+ Sbjct: 181 KQMPPGHIVSHLDNILGQENIEFETPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLD 240 Query: 241 AVQGMLGALDQSYLIRVLDALAAQDGSGLLAVADEMATRSLSYNAALQDLATLLHQIALA 300 AVQGMLGALDQS+LIR+LDALA +DG+GLLAVADEMATRSLSYNAALQDL TLLH++ALA Sbjct: 241 AVQGMLGALDQSFLIRLLDALAEKDGAGLLAVADEMATRSLSYNAALQDLCTLLHRVALA 300 Query: 301 QTVPAALAEDLPQREDIVRLASQFSAEEAQLFYQIVVHGRNELGLAPDEYAGFSMTLLRM 360 QTVPAA+ EDLP+ D++RLA F AEE QLFYQI VHGRNELGLAPDEYAGFSMTLLRM Sbjct: 301 QTVPAAVPEDLPEYADVMRLAGLFDAEEIQLFYQIAVHGRNELGLAPDEYAGFSMTLLRM 360 Query: 361 LAFRP 365 LAFRP Sbjct: 361 LAFRP 365 >ref|YP_584277.1| DNA polymerase III subunits gamma and tau [Cupriavidus metallidurans CH34] gb|ABF09008.1| DNA polymerase III tau/gamma subunit [Cupriavidus metallidurans CH34] Length = 795 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 295/372 (79%), Positives = 333/372 (89%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARK+RPR F TLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCQGPDGNGGITAQPCGVCDACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 +LNC GPDGNGGITAQPCG C AC ID+GRFVDYIEMDAASNRGVDEMAQLL++A+YAP Sbjct: 61 ALNCTGPDGNGGITAQPCGQCKACTEIDSGRFVDYIEMDAASNRGVDEMAQLLDKAIYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 + RFKVYMIDEVHMLTNHAFN+MLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL Sbjct: 121 TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 181 KQMPPGHIISHLDNILGQENIEFEAPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLE 240 KQMPPGHI+SHLD+IL QE I + ALRLLAQ AHGSMRDALSLTDQAIAY+AG+V+ E Sbjct: 181 KQMPPGHIVSHLDHILAQEGISHDGSALRLLAQAAHGSMRDALSLTDQAIAYSAGQVSEE 240 Query: 241 AVQGMLGALDQSYLIRVLDALAAQDGSGLLAVADEMATRSLSYNAALQDLATLLHQIALA 300 AV+GMLGA+DQSYL+++LDALAA+DG+ +L +AD MA RSLS+ ALQDL +LLH++ALA Sbjct: 241 AVRGMLGAIDQSYLVQLLDALAAEDGATMLGIADSMADRSLSFAGALQDLGSLLHKVALA 300 Query: 301 QTVPAALAEDLPQREDIVRLASQFSAEEAQLFYQIVVHGRNELGLAPDEYAGFSMTLLRM 360 Q VPA++ ++ P+ ED+ RLA QF A+E QLFYQI GR+EL LAPDEYAGF+MTLLRM Sbjct: 301 QAVPASVQDEWPEAEDVRRLARQFDAQETQLFYQIANLGRSELALAPDEYAGFTMTLLRM 360 Query: 361 LAFRPVAANAAA 372 LAFRP A A++ Sbjct: 361 LAFRPSTAPASS 372