BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0074.p (164 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777067.1| DNA polymerase III subunit gamma/tau [Herbas... 205 1e-51 ref|YP_004753462.1| DNA polymerase III subunits gamma and tau [C... 164 6e-39 ref|YP_001354020.1| DNA polymerase III gamma and tau subunit [Ja... 143 8e-33 ref|ZP_04577428.1| DNA polymerase III gamma and tau [Oxalobacter... 140 5e-32 ref|ZP_04579582.1| DNA polymerase III subunit gamma [Oxalobacter... 137 5e-31 >ref|YP_003777067.1| DNA polymerase III subunit gamma/tau [Herbaspirillum seropedicae SmR1] gb|ADJ65159.1| DNA polymerase III (subunits tau and gamma) protein [Herbaspirillum seropedicae SmR1] Length = 712 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 103/142 (72%), Positives = 118/142 (83%), Gaps = 2/142 (1%) Query: 24 PAMAAQTARIAAELGWDGNWPQLAADL-SLRGMVAQMAQQSELVRCEQ-SGNSVVFHLRI 81 PA +TARIAAELGWDG+WP LAA L SLRG+ QMA QSELVRCE +G +V FHLRI Sbjct: 570 PAQQQETARIAAELGWDGHWPTLAASLASLRGVAHQMAFQSELVRCEPLNGGNVCFHLRI 629 Query: 82 PVETLRASGNIEKLTAVLGERFNKNVRVETEIGAVALTANARAQADRAERQREAEQTMQN 141 P+ETLR+SG++EKLTA L ERF K +RVETEIGAVA TANA A+A+RAERQR+AE M+N Sbjct: 630 PLETLRSSGSVEKLTAALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKN 689 Query: 142 DPFVQVMMREFDASIVPGSIRP 163 DPFV MMREF ASIVPGSI+P Sbjct: 690 DPFVVTMMREFGASIVPGSIQP 711 >ref|YP_004753462.1| DNA polymerase III subunits gamma and tau [Collimonas fungivorans Ter331] gb|AEK62639.1| DNA polymerase III subunits gamma and tau [Collimonas fungivorans Ter331] Length = 703 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 76/128 (59%), Positives = 98/128 (76%) Query: 37 LGWDGNWPQLAADLSLRGMVAQMAQQSELVRCEQSGNSVVFHLRIPVETLRASGNIEKLT 96 L WDGNWP LA+ L++RG+ Q+AQQSELV+ + SG + FHLRIP +TLR++G+++KL Sbjct: 575 LNWDGNWPLLASTLAVRGVAHQLAQQSELVKSDSSGPAAQFHLRIPFDTLRSAGSVDKLE 634 Query: 97 AVLGERFNKNVRVETEIGAVALTANARAQADRAERQREAEQTMQNDPFVQVMMREFDASI 156 L E F + V+VETE+G V TANA+ A +AERQR AE T +DPF+Q MMREF ASI Sbjct: 635 VALSEHFGRPVKVETELGTVRHTANAQMLAAQAERQRLAELTAHSDPFIQSMMREFGASI 694 Query: 157 VPGSIRPL 164 VPGSI+PL Sbjct: 695 VPGSIKPL 702 >ref|YP_001354020.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp. Marseille] gb|ABR88343.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp. Marseille] Length = 673 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 78/132 (59%), Positives = 99/132 (75%), Gaps = 2/132 (1%) Query: 35 AELGWDGNWPQLAADLSLRGMVAQMAQQSELVRCEQSGNS--VVFHLRIPVETLRASGNI 92 A L WDGNWP LAA L +RG+ Q+A QSEL++C + S + F L + V+ L A+G+ Sbjct: 542 ASLNWDGNWPALAAILPVRGVAQQLALQSELLKCGPTPESAQITFDLLVAVDVLLANGSA 601 Query: 93 EKLTAVLGERFNKNVRVETEIGAVALTANARAQADRAERQREAEQTMQNDPFVQVMMREF 152 EKLTAVL E F + VR++T IGAV TA+A A ADRAERQREAEQ+MQ DPFVQ +MREF Sbjct: 602 EKLTAVLCEHFGQTVRLQTTIGAVEHTASAAAIADRAERQREAEQSMQEDPFVQKLMREF 661 Query: 153 DASIVPGSIRPL 164 A+IVPGS++P+ Sbjct: 662 GATIVPGSVKPV 673 >ref|ZP_04577428.1| DNA polymerase III gamma and tau [Oxalobacter formigenes HOxBLS] gb|EEO28390.1| DNA polymerase III gamma and tau [Oxalobacter formigenes HOxBLS] Length = 597 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 105/172 (61%), Gaps = 12/172 (6%) Query: 2 AAAAPAADDAIV---------VAAAPASTVTPAMAAQTARIAAELGWDGNWPQLAADLSL 52 A ++PAA DA+ + A TV + + +A GWD NWP+LAA+L L Sbjct: 429 AVSSPAAKDAVAKFPAFEEQAIKTAENRTVVSSSVKEKPSLA---GWDCNWPKLAAELPL 485 Query: 53 RGMVAQMAQQSELVRCEQSGNSVVFHLRIPVETLRASGNIEKLTAVLGERFNKNVRVETE 112 RG+ Q+AQQ+EL+R E++ +S VFHL+ PV TL N+ KL VL + F V++ TE Sbjct: 486 RGLTQQLAQQTELIRWEKTESSCVFHLKSPVATLCTPNNVSKLGGVLSDYFGCAVKITTE 545 Query: 113 IGAVALTANARAQADRAERQREAEQTMQNDPFVQVMMREFDASIVPGSIRPL 164 IG V TAN A RAERQR+AE+ + DP+++ + +EF IV GSI+PL Sbjct: 546 IGKVEETANQNAIEARAERQRQAEEALTADPYLRNLAQEFGGHIVEGSIKPL 597 >ref|ZP_04579582.1| DNA polymerase III subunit gamma [Oxalobacter formigenes OXCC13] gb|EEO30555.1| DNA polymerase III subunit gamma [Oxalobacter formigenes OXCC13] Length = 604 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 65/130 (50%), Positives = 89/130 (68%) Query: 35 AELGWDGNWPQLAADLSLRGMVAQMAQQSELVRCEQSGNSVVFHLRIPVETLRASGNIEK 94 E W+GNWP+LAA L +RGMV Q+AQQ+ELV E+ ++ V HL+ P+ TL NI + Sbjct: 475 GEGSWNGNWPELAAVLPVRGMVQQLAQQTELVHWEKKDSACVLHLKSPIATLCTPNNINR 534 Query: 95 LTAVLGERFNKNVRVETEIGAVALTANARAQADRAERQREAEQTMQNDPFVQVMMREFDA 154 LT VL E F + V++ TEIG V TAN A RAERQR+AE+ + NDP+V+ ++ EF Sbjct: 535 LTEVLAEHFGQPVKITTEIGKVEETANQNAIEARAERQRQAEEAITNDPYVKSVIAEFGG 594 Query: 155 SIVPGSIRPL 164 IV GS++P+ Sbjct: 595 HIVEGSVKPV 604