BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0068.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporte... 608 e-172 ref|YP_004753459.1| family 3 extracellular solute-binding protei... 591 e-167 ref|YP_523992.1| extracellular solute-binding protein [Rhodofera... 558 e-157 ref|YP_002005932.1| ABC transporter substrate-binding protein [C... 494 e-138 ref|YP_584270.1| ABC transporter periplasmic protein [Cupriavidu... 494 e-138 >ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65154.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 298/345 (86%), Positives = 321/345 (93%) Query: 1 MKFNLKQFAIALALFLAGYLTFNTNLFAQALEKPKVSIAVGGKNLFYYLPLTVAEQLGYF 60 MK + KQ IA LFLAGY +FN + AQALEKPKVSIAVGGKNLFYYLPLT+AEQLGYF Sbjct: 1 MKLSWKQLLIAAGLFLAGYFSFNGSAGAQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYF 60 Query: 61 KDEGLQVEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIV 120 KDEGLQVEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIV Sbjct: 61 KDEGLQVEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIV 120 Query: 121 LAASNKTMPNYKSVADLKGKKIGVTAPGSSTSIMASFVLAKAGLKPTDVSFIGVGAAAGA 180 LA +NKTMPNYK+VADLKGKKIGVTAPGSSTS+MAS+VLAKAGLKP+DVSFIGVGAAAGA Sbjct: 121 LAVNNKTMPNYKTVADLKGKKIGVTAPGSSTSVMASYVLAKAGLKPSDVSFIGVGAAAGA 180 Query: 181 LSALRSGQIDAIANLDPVISMLEQKNEIKIIADTRTLKDTNDVFGGPMPAATLYAPEAFI 240 +SA+RSGQIDAIANLDPVISMLEQ EIK IADTRTLKDTNDVFGGPMPAATLYAP AFI Sbjct: 181 ISAVRSGQIDAIANLDPVISMLEQSKEIKTIADTRTLKDTNDVFGGPMPAATLYAPAAFI 240 Query: 241 KKYPNTTQALTNAMVRALKWIQQAGPSDIIKAVPESYLLGDRALYISAFLKVREAMSPDG 300 +KYPNTTQALTNAMVRALKWIQ+AGPSDIIKAVPESYLLGDR+LYI AF+KVR+A+SPDG Sbjct: 241 QKYPNTTQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDG 300 Query: 301 IFPDAGPATALRTLQAFEPDLASKKIDLSRTYTNEFARKANAKHK 345 FP GP TALRTL+AFEP LA K+IDLS+T+TN F +KANAK+K Sbjct: 301 YFPPGGPDTALRTLKAFEPSLADKQIDLSKTFTNSFVQKANAKYK 345 >ref|YP_004753459.1| family 3 extracellular solute-binding protein [Collimonas fungivorans Ter331] gb|AEK62636.1| extracellular solute-binding protein, family 3 [Collimonas fungivorans Ter331] Length = 345 Score = 591 bits (1524), Expect = e-167, Method: Compositional matrix adjust. Identities = 286/345 (82%), Positives = 313/345 (90%) Query: 1 MKFNLKQFAIALALFLAGYLTFNTNLFAQALEKPKVSIAVGGKNLFYYLPLTVAEQLGYF 60 MKF+ KQF IAL LFLAGY TFN LFAQ EK KV+IAVGGKNLFYYLPLT+AEQLGYF Sbjct: 1 MKFSWKQFGIALCLFLAGYFTFNGKLFAQTPEKTKVAIAVGGKNLFYYLPLTIAEQLGYF 60 Query: 61 KDEGLQVEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIV 120 KDEGL V ISDFAGGAKALQA+VGGSADVVSGA+EHTI+MQAKNQ IVAFVLQGRAPQIV Sbjct: 61 KDEGLDVTISDFAGGAKALQALVGGSADVVSGAFEHTISMQAKNQHIVAFVLQGRAPQIV 120 Query: 121 LAASNKTMPNYKSVADLKGKKIGVTAPGSSTSIMASFVLAKAGLKPTDVSFIGVGAAAGA 180 + SNKTMPNYKS+ADLKGKKIGVTAPGSSTS+M++FVLAK GLKPTDVS+IGVGA+AGA Sbjct: 121 MGVSNKTMPNYKSIADLKGKKIGVTAPGSSTSMMSNFVLAKGGLKPTDVSYIGVGASAGA 180 Query: 181 LSALRSGQIDAIANLDPVISMLEQKNEIKIIADTRTLKDTNDVFGGPMPAATLYAPEAFI 240 LSALRSG ID IANLDP+I+M++Q NEI+IIADTRTLKDTN VFGGPMPAATLYA FI Sbjct: 181 LSALRSGSIDVIANLDPLITMMQQNNEIRIIADTRTLKDTNAVFGGPMPAATLYASADFI 240 Query: 241 KKYPNTTQALTNAMVRALKWIQQAGPSDIIKAVPESYLLGDRALYISAFLKVREAMSPDG 300 KKYPNTTQALTNAMVRALKW+Q+AGPSDI+K VPESY LGDRALYI AF+KVREA+SPDG Sbjct: 241 KKYPNTTQALTNAMVRALKWLQKAGPSDIVKTVPESYQLGDRALYIEAFMKVREAISPDG 300 Query: 301 IFPDAGPATALRTLQAFEPDLASKKIDLSRTYTNEFARKANAKHK 345 PDAGP ALRTLQAF+PDLA K IDLS+TYTNEF +KANAK+K Sbjct: 301 TIPDAGPQVALRTLQAFDPDLAGKNIDLSQTYTNEFVKKANAKYK 345 >ref|YP_523992.1| extracellular solute-binding protein [Rhodoferax ferrireducens T118] gb|ABD70461.1| extracellular solute-binding protein, family 3 [Rhodoferax ferrireducens T118] Length = 340 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 269/342 (78%), Positives = 308/342 (90%), Gaps = 3/342 (0%) Query: 4 NLKQFAIALALFLAGYLTFNTNLFAQALEKPKVSIAVGGKNLFYYLPLTVAEQLGYFKDE 63 N K+ AI + + LA LT T+ FAQ++EK KVSIAVGGKNLFYYLPLT+AEQLGYFKDE Sbjct: 2 NFKKIAIGMVM-LAACLT--TSAFAQSIEKSKVSIAVGGKNLFYYLPLTIAEQLGYFKDE 58 Query: 64 GLQVEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIVLAA 123 GL+VEISDFAGG+KALQA++GGSADVVSGA+EHTINMQAK Q I AFVLQGRAPQIV Sbjct: 59 GLEVEISDFAGGSKALQALIGGSADVVSGAFEHTINMQAKGQMITAFVLQGRAPQIVFGV 118 Query: 124 SNKTMPNYKSVADLKGKKIGVTAPGSSTSIMASFVLAKAGLKPTDVSFIGVGAAAGALSA 183 SNKT+PNYKS+ADLKGKKIGV+APGSST+IMA+FVL+K GLKPTDVSFIGVG +AGALSA Sbjct: 119 SNKTLPNYKSIADLKGKKIGVSAPGSSTNIMANFVLSKGGLKPTDVSFIGVGTSAGALSA 178 Query: 184 LRSGQIDAIANLDPVISMLEQKNEIKIIADTRTLKDTNDVFGGPMPAATLYAPEAFIKKY 243 LRSGQIDAI+NLDPVI+ML+QKNEI++IADTR L DTN FGGPMPA TLYA EAF+KKY Sbjct: 179 LRSGQIDAISNLDPVITMLQQKNEIRVIADTRKLSDTNAFFGGPMPAGTLYATEAFVKKY 238 Query: 244 PNTTQALTNAMVRALKWIQQAGPSDIIKAVPESYLLGDRALYISAFLKVREAMSPDGIFP 303 PNTTQALTNAMVRALKW+Q AGPSDI+K VPES+LLGDRALY+ AF+ +R A+SPDG FP Sbjct: 239 PNTTQALTNAMVRALKWLQTAGPSDIVKVVPESFLLGDRALYLDAFMNIRGALSPDGSFP 298 Query: 304 DAGPATALRTLQAFEPDLASKKIDLSRTYTNEFARKANAKHK 345 DAG ATALRTL AFEP+LA+KKIDLS+T+TNEF +KANAK++ Sbjct: 299 DAGAATALRTLTAFEPELANKKIDLSKTFTNEFVKKANAKYR 340 >ref|YP_002005932.1| ABC transporter substrate-binding protein [Cupriavidus taiwanensis LMG 19424] emb|CAQ69869.1| putative ABC transporter, periplasmic_binding component [Cupriavidus taiwanensis LMG 19424] Length = 347 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 252/340 (74%), Positives = 290/340 (85%) Query: 6 KQFAIALALFLAGYLTFNTNLFAQALEKPKVSIAVGGKNLFYYLPLTVAEQLGYFKDEGL 65 KQF IALALFLAG+ TF EK KV+IAVGGKNLFYYLPLT+AE+LGYFK+EGL Sbjct: 8 KQFLIALALFLAGWFTFGQAQAQGKPEKTKVTIAVGGKNLFYYLPLTIAERLGYFKEEGL 67 Query: 66 QVEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIVLAASN 125 VEI DFAGGAKALQA+VGGSADVVSGAYEHTIN+QAK Q FVLQGRAPQIVL SN Sbjct: 68 DVEIVDFAGGAKALQAVVGGSADVVSGAYEHTINLQAKGQRYQEFVLQGRAPQIVLVVSN 127 Query: 126 KTMPNYKSVADLKGKKIGVTAPGSSTSIMASFVLAKAGLKPTDVSFIGVGAAAGALSALR 185 KTMPN+KS+ADLKGKKIGVTAPGSST++MA+FVLAKAGLKP+DVSFIGVGA+AGA++A+R Sbjct: 128 KTMPNFKSIADLKGKKIGVTAPGSSTNMMANFVLAKAGLKPSDVSFIGVGASAGAVAAMR 187 Query: 186 SGQIDAIANLDPVISMLEQKNEIKIIADTRTLKDTNDVFGGPMPAATLYAPEAFIKKYPN 245 SGQIDA+ANLDPV+SML QKNE++I +DTRTLKDT VFGG MP+ LYA +AFI++ PN Sbjct: 188 SGQIDAMANLDPVVSMLTQKNEVRIASDTRTLKDTQAVFGGNMPSGCLYASQAFIQQNPN 247 Query: 246 TTQALTNAMVRALKWIQQAGPSDIIKAVPESYLLGDRALYISAFLKVREAMSPDGIFPDA 305 TTQALTNAMVRALKW+Q+AGPSDI+K VPESYLLGDRALY++A+ KV+EA+SPDG P Sbjct: 248 TTQALTNAMVRALKWLQKAGPSDIVKTVPESYLLGDRALYLAAWEKVKEAISPDGTMPAD 307 Query: 306 GPATALRTLQAFEPDLASKKIDLSRTYTNEFARKANAKHK 345 GP TAL L F+ +L K I L TYTN F +KANAK+K Sbjct: 308 GPRTALNALGQFDAELKGKSIRLEETYTNAFVQKANAKYK 347 >ref|YP_584270.1| ABC transporter periplasmic protein [Cupriavidus metallidurans CH34] gb|ABF09001.1| ABC-type transporter, periplasmic component [Cupriavidus metallidurans CH34] Length = 347 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 250/340 (73%), Positives = 292/340 (85%) Query: 6 KQFAIALALFLAGYLTFNTNLFAQALEKPKVSIAVGGKNLFYYLPLTVAEQLGYFKDEGL 65 KQ IALALFLAG+ TF + EK KV+IAVGGKNLFYYLPLT+AE+LGYFK+EGL Sbjct: 8 KQVLIALALFLAGWFTFGSAQAQGKPEKSKVTIAVGGKNLFYYLPLTIAERLGYFKEEGL 67 Query: 66 QVEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIVLAASN 125 VEI DFAGGAKALQA+VGGSADVVSGAYEHTIN+QAK Q FVLQGRAPQIVL SN Sbjct: 68 DVEIVDFAGGAKALQAVVGGSADVVSGAYEHTINLQAKGQQYQEFVLQGRAPQIVLVVSN 127 Query: 126 KTMPNYKSVADLKGKKIGVTAPGSSTSIMASFVLAKAGLKPTDVSFIGVGAAAGALSALR 185 KTMPN+KS+ADLKGKKIGVTAPGSST++MA+FVLAKAGLKP+DVSFIGVGA+AGA++A+R Sbjct: 128 KTMPNFKSIADLKGKKIGVTAPGSSTNMMANFVLAKAGLKPSDVSFIGVGASAGAVAAMR 187 Query: 186 SGQIDAIANLDPVISMLEQKNEIKIIADTRTLKDTNDVFGGPMPAATLYAPEAFIKKYPN 245 SGQIDA+ANLDPVISML QKNE+KI +DTRT+K+T VFGG MP+ LYA +FI++ PN Sbjct: 188 SGQIDAMANLDPVISMLTQKNEVKIASDTRTIKETQTVFGGNMPSGCLYASVSFIQQNPN 247 Query: 246 TTQALTNAMVRALKWIQQAGPSDIIKAVPESYLLGDRALYISAFLKVREAMSPDGIFPDA 305 TTQA+ NAMVRALKW+Q+AGPSDI+K VPESYLLGDRALY++A+ KV+EA+SPDG+ P Sbjct: 248 TTQAMANAMVRALKWLQKAGPSDIVKTVPESYLLGDRALYLAAWDKVKEAISPDGMMPTD 307 Query: 306 GPATALRTLQAFEPDLASKKIDLSRTYTNEFARKANAKHK 345 GP TAL TLQ F+P+L K I L T+TN F +KANAK+K Sbjct: 308 GPHTALNTLQQFDPELKGKAIKLENTFTNNFVQKANAKYK 347