BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0066.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777060.1| nitrate/sulfonate/bicarbonate ABC transporte... 521 e-146 ref|YP_004753457.1| binding-protein-dependent transport systems ... 498 e-139 ref|YP_523990.1| binding-protein-dependent transport systems inn... 445 e-123 ref|YP_549097.1| binding-protein-dependent transport systems inn... 432 e-119 ref|YP_002944229.1| binding-protein-dependent transport systems ... 414 e-114 >ref|YP_003777060.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65152.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 260/283 (91%), Positives = 271/283 (95%) Query: 1 MWKLLKPSHKNLLFWQLLVLVVVLAVWHIATRNEQTAFFFGEPLKVAVRIWQWFTVGSGS 60 MWKL KP+HKN+ FWQL+VL +VL VWH+ATRN QTAFFFGEPLKVA RIW+WFTVGSGS Sbjct: 1 MWKLFKPNHKNIRFWQLMVLAIVLVVWHVATRNPQTAFFFGEPLKVAQRIWEWFTVGSGS 60 Query: 61 LEVGFGDTTFFTLNFPAEIYSHLLVTLTETVLAFGIGTVLGLGIGLWLALSPLASAILDP 120 LEVG GDTTFFTL+FPAEIYSHLL+TLTETVLAF IGTV GL IGLWLALSP ASAILDP Sbjct: 61 LEVGIGDTTFFTLSFPAEIYSHLLITLTETVLAFVIGTVFGLAIGLWLALSPTASAILDP 120 Query: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR Sbjct: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 Query: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSF 240 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEG+F Sbjct: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGTF 240 Query: 241 DINTVFAGIVVLTAFALVLDVAVGVIEKRLMKWQPKSGETEKM 283 DINTVFAGIVVLT FALVLD+AVGVIEKRLMKWQPKSGETEK+ Sbjct: 241 DINTVFAGIVVLTIFALVLDLAVGVIEKRLMKWQPKSGETEKL 283 >ref|YP_004753457.1| binding-protein-dependent transport systems inner membrane component [Collimonas fungivorans Ter331] gb|AEK62634.1| binding-protein-dependent transport systems inner membrane component [Collimonas fungivorans Ter331] Length = 283 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/283 (86%), Positives = 267/283 (94%) Query: 1 MWKLLKPSHKNLLFWQLLVLVVVLAVWHIATRNEQTAFFFGEPLKVAVRIWQWFTVGSGS 60 MWK +KP++KNL +Q+LVL+V +WH+ATRN QTAFFFGEP+KV RIWQWFTVGSGS Sbjct: 1 MWKAIKPNYKNLRAYQVLVLLVFFLIWHLATRNPQTAFFFGEPIKVLQRIWQWFTVGSGS 60 Query: 61 LEVGFGDTTFFTLNFPAEIYSHLLVTLTETVLAFGIGTVLGLGIGLWLALSPLASAILDP 120 +EVGFGD T+FTL FPAEIYSHLLVTLTET+LAFGIGTVLGLG+GLWLALSPL SAILDP Sbjct: 61 VEVGFGDHTWFTLTFPAEIYSHLLVTLTETMLAFGIGTVLGLGVGLWLALSPLTSAILDP 120 Query: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 Y+KA+N+MPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR Sbjct: 121 YIKASNAMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 Query: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSF 240 MLGAN RQLLRTVYLPSATSWVFSSLHTS+GLAFVG +VGEYLGSARGVGYLILQAEGSF Sbjct: 181 MLGANQRQLLRTVYLPSATSWVFSSLHTSVGLAFVGVIVGEYLGSARGVGYLILQAEGSF 240 Query: 241 DINTVFAGIVVLTAFALVLDVAVGVIEKRLMKWQPKSGETEKM 283 DINTVFAGI+VLTAFALVLD VG+IEKRLMKWQPKSGETE++ Sbjct: 241 DINTVFAGILVLTAFALVLDTVVGMIEKRLMKWQPKSGETERL 283 >ref|YP_523990.1| binding-protein-dependent transport systems inner membrane component [Rhodoferax ferrireducens T118] gb|ABD70459.1| binding-protein-dependent transport systems inner membrane component [Rhodoferax ferrireducens T118] Length = 283 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 229/283 (80%), Positives = 260/283 (91%) Query: 1 MWKLLKPSHKNLLFWQLLVLVVVLAVWHIATRNEQTAFFFGEPLKVAVRIWQWFTVGSGS 60 MW+ ++P+ N+ WQ+LVL++ +WH +R+ Q AFFFGEPL V R+W WFT GSG+ Sbjct: 1 MWRRIRPTSGNVRIWQVLVLLLFFLLWHWISRDIQVAFFFGEPLIVLGRVWAWFTSGSGN 60 Query: 61 LEVGFGDTTFFTLNFPAEIYSHLLVTLTETVLAFGIGTVLGLGIGLWLALSPLASAILDP 120 LEVG GD+T+FTL+FP EIYSHLL+TLTET+LAFGIGTV+GLG+GLWLALSPL SAILDP Sbjct: 61 LEVGLGDSTWFTLHFPGEIYSHLLITLTETLLAFGIGTVMGLGVGLWLALSPLTSAILDP 120 Query: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 Y+KAANSMPRVILAPIF MWFGLGIWSKVALA+TLVFFIVFFNVYQGVKEVSPVVLANAR Sbjct: 121 YIKAANSMPRVILAPIFGMWFGLGIWSKVALAITLVFFIVFFNVYQGVKEVSPVVLANAR 180 Query: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSF 240 MLGANARQLLR+VYLPSATSWVFSSLHTS+GLAFVGA+VGEY+GSARGVGYLILQAEG+F Sbjct: 181 MLGANARQLLRSVYLPSATSWVFSSLHTSVGLAFVGAIVGEYMGSARGVGYLILQAEGTF 240 Query: 241 DINTVFAGIVVLTAFALVLDVAVGVIEKRLMKWQPKSGETEKM 283 DINTVFAGI+VLT FALVLD AVG++EKRLMKWQPKSGETEK+ Sbjct: 241 DINTVFAGILVLTLFALVLDGAVGLVEKRLMKWQPKSGETEKL 283 >ref|YP_549097.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] gb|ABE44199.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] Length = 279 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 222/285 (77%), Positives = 244/285 (85%), Gaps = 8/285 (2%) Query: 1 MWKLLKPSHKNLLFWQLLVLVVVLAVWHIATRNEQTAFFFGEPLKVAVRIWQWFTVGSGS 60 MW+ +KPS KNL WQ +LV +LA WH+A+R++Q AFF GEP+KVA R+W WF Sbjct: 1 MWRHIKPSGKNLRIWQAGLLVFMLAGWHLASRDQQIAFFLGEPIKVAGRVWSWF------ 54 Query: 61 LEVGFGDTTFFTLNFP--AEIYSHLLVTLTETVLAFGIGTVLGLGIGLWLALSPLASAIL 118 + GFG + F P A+IY HL TL ETVLAFGIGTVLGL GLWLAL+P ASAIL Sbjct: 55 MPFGFGGSRLFPDGLPGNADIYLHLGTTLLETVLAFGIGTVLGLVCGLWLALAPTASAIL 114 Query: 119 DPYVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLAN 178 DPY+KAANSMPRVILAPIFA+WFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLAN Sbjct: 115 DPYIKAANSMPRVILAPIFALWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLAN 174 Query: 179 ARMLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEG 238 ARMLGAN RQLLRTVYLPSATSWVFSSLHTS+GLAFVGAVVGEYLGSARGVGYLILQAEG Sbjct: 175 ARMLGANHRQLLRTVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSARGVGYLILQAEG 234 Query: 239 SFDINTVFAGIVVLTAFALVLDVAVGVIEKRLMKWQPKSGETEKM 283 +FD+NTVFAGI VLTAFALVLD VG +EKRLMKWQP+SGETEK+ Sbjct: 235 TFDVNTVFAGIAVLTAFALVLDGIVGKLEKRLMKWQPRSGETEKL 279 >ref|YP_002944229.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS18963.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 277 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/276 (76%), Positives = 237/276 (85%), Gaps = 4/276 (1%) Query: 8 SHKNLLFWQLLVLVVVLAVWHIATRNEQTAFFFGEPLKVAVRIWQWFTVGSGSLEVGFGD 67 + +N FWQL++L ++L WH+A+RN+Q AFF GEP++VA RIW WF + F + Sbjct: 6 NERNARFWQLVLLAIILVGWHLASRNQQIAFFLGEPIQVAGRIWSWFLPFEVPPNLLFPE 65 Query: 68 TTFFTLNFPAEIYSHLLVTLTETVLAFGIGTVLGLGIGLWLALSPLASAILDPYVKAANS 127 L A+IY HL TL ETVLAFGIGTVLGL GLWLAL+P AS ILDPY+KAANS Sbjct: 66 G----LKGNADIYRHLGTTLLETVLAFGIGTVLGLACGLWLALAPTASLILDPYIKAANS 121 Query: 128 MPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANARMLGANAR 187 MPRVILAPIFA+WFGLGIWSKVALAVTLVFFIVFFNVYQGV+EVSPVVLANA+MLGAN R Sbjct: 122 MPRVILAPIFALWFGLGIWSKVALAVTLVFFIVFFNVYQGVREVSPVVLANAKMLGANQR 181 Query: 188 QLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSFDINTVFA 247 QLLRTVYLPSATSWVFSSLHTS+GLAFVGAVVGEYLGSARGVGYLILQAEG+FD+NTVFA Sbjct: 182 QLLRTVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSARGVGYLILQAEGTFDVNTVFA 241 Query: 248 GIVVLTAFALVLDVAVGVIEKRLMKWQPKSGETEKM 283 GIVVLTAFAL+LD VG+IEKRLMKWQP+SGETEK+ Sbjct: 242 GIVVLTAFALLLDGLVGLIEKRLMKWQPRSGETEKL 277