BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0036.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352876.1| LysR family transcriptional regulator [Janth... 454 e-125 ref|YP_003776842.1| LysR family transcription regulator protein ... 432 e-119 gb|EFV85048.1| LysR family Transcriptional regulator [Achromobac... 365 6e-99 ref|ZP_06689535.1| LysR family transcriptional regulator [Achrom... 364 9e-99 gb|EGP47526.1| HTH-type transcriptional regulator YnfL 3 [Achrom... 358 8e-97 >ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90151.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 301 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 223/302 (73%), Positives = 258/302 (85%), Gaps = 2/302 (0%) Query: 1 MSTIDLRLLRYFIAVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFNRLPRGMEL 60 MS+IDLRLLRYF+ VAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLF R+PRGMEL Sbjct: 1 MSSIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMEL 60 Query: 61 TESGQALLTDARQILAQVDSTVAGVRRIARGELGRIAVGFTESASLHPFVPTVIRAFRDA 120 TESGQALL DAR IL QV++T+ GVRRI+ GE GR+AVGFTESA+LHPF+P VIRAFR Sbjct: 61 TESGQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQK 120 Query: 121 VPDVALTVEESSTTDLVALMSQNRIDVAFIRSPVGDVSDITIETMMVEEMIVALPAAHPL 180 P V + VEES+T +LV + NR+DVAFIRSP+G + + +ETM+VEEMIVALP H L Sbjct: 121 SPGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRL 180 Query: 181 VRNKRRKSVALAALAEEVFILNRRPSGPGLYDTIIAACRAAGFSPRVEQEARKNLSTLSL 240 +RRKS+ L ALAE+ FILNRRPSGPGLYD++IAACRAAGFSPRV QEA+KNLSTLSL Sbjct: 181 A--QRRKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSL 238 Query: 241 VAAGLGISIIPASMRHVELESVSYLGIDDAPDLKAPLHLAYRDSGQSGAVKRFIAEARKC 300 VAAGLG+SI+PASMRHV+L+ V YL ++ APDL+APLHLAYRD QSGA +R I EARK Sbjct: 239 VAAGLGVSIVPASMRHVQLKEVVYLKLEQAPDLRAPLHLAYRDEPQSGAAERMIIEARKL 298 Query: 301 AK 302 A+ Sbjct: 299 AQ 300 >ref|YP_003776842.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64934.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 215/305 (70%), Positives = 251/305 (82%) Query: 3 TIDLRLLRYFIAVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFNRLPRGMELTE 62 +IDLRLLRYFIAVAEEGHLTKAA+RIGIQQPPLSQQIR LE+ELGVTLFNRLPRGMELT+ Sbjct: 18 SIDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRVLERELGVTLFNRLPRGMELTD 77 Query: 63 SGQALLTDARQILAQVDSTVAGVRRIARGELGRIAVGFTESASLHPFVPTVIRAFRDAVP 122 SG ALL DAR +LAQ+D+TVA VRRIA+G++GRIAVGFTESASLHPFV +VIRAFR P Sbjct: 78 SGAALLIDARALLAQLDTTVASVRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAP 137 Query: 123 DVALTVEESSTTDLVALMSQNRIDVAFIRSPVGDVSDITIETMMVEEMIVALPAAHPLVR 182 DVA+TVEES+T +L+ + R+D+AF+RSPVGD +TIETM+ E+M+ ALP HPLV Sbjct: 138 DVAMTVEESNTNELIEALRGKRLDLAFVRSPVGDSGGLTIETMLEEDMVAALPIDHPLVD 197 Query: 183 NKRRKSVALAALAEEVFILNRRPSGPGLYDTIIAACRAAGFSPRVEQEARKNLSTLSLVA 242 +RKS+AL ALAEE FI+ RRP+GPGLYDTIIAAC AAGFSP+V QEARKNLSTLSLVA Sbjct: 198 GGKRKSIALHALAEESFIMTRRPNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVA 257 Query: 243 AGLGISIIPASMRHVELESVSYLGIDDAPDLKAPLHLAYRDSGQSGAVKRFIAEARKCAK 302 AG+G+++IPASM V E V YL + APDLKAPLHLAYR SGA + EA K + Sbjct: 258 AGVGVTVIPASMTRVNAEGVVYLKLTGAPDLKAPLHLAYRTGSISGAARLMREEALKLSA 317 Query: 303 AAGKR 307 +R Sbjct: 318 GRKRR 322 >gb|EFV85048.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 308 Score = 365 bits (936), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 181/298 (60%), Positives = 230/298 (77%) Query: 1 MSTIDLRLLRYFIAVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFNRLPRGMEL 60 M+++DLRLLRYF+AVAEE HLTKAA R+GI+QPPLSQQIR LE+ELGVTLF+RLPRGMEL Sbjct: 1 MASVDLRLLRYFLAVAEESHLTKAAARLGIRQPPLSQQIRVLEQELGVTLFHRLPRGMEL 60 Query: 61 TESGQALLTDARQILAQVDSTVAGVRRIARGELGRIAVGFTESASLHPFVPTVIRAFRDA 120 TESG+ALL DAR ILA VD V GVRR++ GE GR+ VGFT SA+ HPFVP++IR FR+ Sbjct: 61 TESGRALLADARSILALVDQAVDGVRRVSLGESGRLTVGFTGSAAFHPFVPSLIRRFREN 120 Query: 121 VPDVALTVEESSTTDLVALMSQNRIDVAFIRSPVGDVSDITIETMMVEEMIVALPAAHPL 180 P V L +EESST +L+ + R+DVAFIR G + +ET++ E M+ A PA HP+ Sbjct: 121 APQVRLVLEESSTGELMEDVRDGRVDVAFIRGAHGVDRGVAVETVLEESMLAAFPADHPM 180 Query: 181 VRNKRRKSVALAALAEEVFILNRRPSGPGLYDTIIAACRAAGFSPRVEQEARKNLSTLSL 240 V+ + RK +AL+ LA+E IL RR +GPGLYD II+ACRAAGFSPRV QEA + LSTLSL Sbjct: 181 VKGRARKRIALSELADESLILYRRHNGPGLYDAIISACRAAGFSPRVAQEAPRMLSTLSL 240 Query: 241 VAAGLGISIIPASMRHVELESVSYLGIDDAPDLKAPLHLAYRDSGQSGAVKRFIAEAR 298 VAAGLG+S++PAS+R V +E V Y+ + ++APL L +RD+ +GA++R I E R Sbjct: 241 VAAGLGVSLVPASLRRVNIEGVVYVNVSGPVAMRAPLTLIWRDAPLTGAIRRLIEEVR 298 >ref|ZP_06689535.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF73426.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 310 Score = 364 bits (935), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 179/299 (59%), Positives = 230/299 (76%) Query: 1 MSTIDLRLLRYFIAVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFNRLPRGMEL 60 M+++DLRLLRYF+AVAEE HLTKAA R+GI+QPPLSQQIR LE+ELGVTLF+RLPRGMEL Sbjct: 1 MASVDLRLLRYFLAVAEEAHLTKAAARLGIRQPPLSQQIRVLEQELGVTLFHRLPRGMEL 60 Query: 61 TESGQALLTDARQILAQVDSTVAGVRRIARGELGRIAVGFTESASLHPFVPTVIRAFRDA 120 TESG+AL+ DAR I+A VD V GVRR+++GE GR+ VGFT SA+ HPFVP+VIR FR++ Sbjct: 61 TESGRALVDDARNIIAMVDQAVDGVRRVSQGEAGRLTVGFTGSAAFHPFVPSVIRRFRES 120 Query: 121 VPDVALTVEESSTTDLVALMSQNRIDVAFIRSPVGDVSDITIETMMVEEMIVALPAAHPL 180 P+V L +EESST +L + R+DVAFIR G + + ET++ E M+ A PA HP Sbjct: 121 APNVRLVLEESSTGELREAVCDGRVDVAFIRGSHGTGAGVCEETVLEETMLAAFPADHPA 180 Query: 181 VRNKRRKSVALAALAEEVFILNRRPSGPGLYDTIIAACRAAGFSPRVEQEARKNLSTLSL 240 V+ + R+ +AL+ LAEE IL RR SGPGLYD II AC A+GFSPRV QEA + LSTLSL Sbjct: 181 VKGRDRRQIALSELAEESLILYRRHSGPGLYDAIITACSASGFSPRVAQEAPRMLSTLSL 240 Query: 241 VAAGLGISIIPASMRHVELESVSYLGIDDAPDLKAPLHLAYRDSGQSGAVKRFIAEARK 299 VAAGLG+S++PAS+R V +E V Y+ + L+AP++L +RD+ SGA ++ I E R+ Sbjct: 241 VAAGLGVSLVPASLRRVNIEGVVYVNVTGPVALRAPMNLIWRDAPMSGATRKLIDEVRR 299 >gb|EGP47526.1| HTH-type transcriptional regulator YnfL 3 [Achromobacter xylosoxidans AXX-A] Length = 299 Score = 358 bits (918), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 179/291 (61%), Positives = 223/291 (76%) Query: 8 LLRYFIAVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFNRLPRGMELTESGQAL 67 +LRYF+AVAEE HLTKAA R+GI+QPPLSQQIR LE+ELGVTLF+RLPRGMELTESG+AL Sbjct: 1 MLRYFLAVAEESHLTKAAARLGIRQPPLSQQIRVLEQELGVTLFHRLPRGMELTESGRAL 60 Query: 68 LTDARQILAQVDSTVAGVRRIARGELGRIAVGFTESASLHPFVPTVIRAFRDAVPDVALT 127 L DAR ILA VD V GVRR++ GE GR+ VGFT SA+ HPFVP+VIR FR++ P V L Sbjct: 61 LADARSILALVDQAVDGVRRVSLGEAGRLTVGFTGSAAFHPFVPSVIRRFRESAPQVRLV 120 Query: 128 VEESSTTDLVALMSQNRIDVAFIRSPVGDVSDITIETMMVEEMIVALPAAHPLVRNKRRK 187 +EESST +L+ + R+DVAFIR G + +E+++ E M+ A PA HP+V+ + RK Sbjct: 121 LEESSTGELMEDVRAGRVDVAFIRGAHGADRGVAVESVLEETMLAAFPADHPMVKGRTRK 180 Query: 188 SVALAALAEEVFILNRRPSGPGLYDTIIAACRAAGFSPRVEQEARKNLSTLSLVAAGLGI 247 +AL+ LAEE IL RR SGPGLYD II+ CRAAGFSPRV QEA + LSTLSLVAAGLG+ Sbjct: 181 RIALSELAEESLILYRRHSGPGLYDAIISGCRAAGFSPRVAQEAPRVLSTLSLVAAGLGV 240 Query: 248 SIIPASMRHVELESVSYLGIDDAPDLKAPLHLAYRDSGQSGAVKRFIAEAR 298 S++PAS+R V +E V Y+ + +L+APL L +RD+ SGA +R I E R Sbjct: 241 SLVPASLRRVNIEGVVYVNVSGPVELRAPLTLIWRDAPLSGATRRLIEEVR 291