BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0006.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776711.1| ABC transporter permease [Herbaspirillum ser... 463 e-128 ref|YP_004754195.1| putative permease [Collimonas fungivorans Te... 412 e-113 ref|YP_001172341.1| taurine ABC transporter, permease protein [P... 405 e-111 ref|YP_003979459.1| binding-protein-dependent transporter inner ... 401 e-110 ref|NP_880426.1| putative permease of ABC transporter [Bordetell... 400 e-110 >ref|YP_003776711.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64803.1| ABC-type transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 257 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 234/257 (91%), Positives = 245/257 (95%) Query: 1 MSSQRRVTGYRKKFAMVLAIAFILLMWQIAAWSLPDFLMPGVPTVLARLWNEVQTPAFRI 60 MSSQRRVTG RKK AMVLAI FILLMWQIAAWSLP FLMPGVP+V ARLW EVQ+ FR+ Sbjct: 1 MSSQRRVTGIRKKLAMVLAIVFILLMWQIAAWSLPSFLMPGVPSVAARLWEEVQSSNFRL 60 Query: 61 ALWGSLTRLGGGYGAALLLGIGFGLIGAVLFFFREVLKSAIIILQSIPSIAWVPLFLILM 120 AL+GSL RLG GYG+AL+LGIGFGL+GAVLFFFREVLKSAI+ILQSIPSIAWVPLFLILM Sbjct: 61 ALFGSLYRLGMGYGSALVLGIGFGLVGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILM 120 Query: 121 GFGNLPIIVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLGMLRRVYLPAVMPE 180 GFGNLPI+VVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRL MLRRVYLPAVMPE Sbjct: 121 GFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPE 180 Query: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRTLAYSGETADMVGVMTNILTIAILAALID 240 LITGAQLAFGNAWRALISAEML+GFGKGLGRTLAYSGETADMVGVM NILTIAILAALID Sbjct: 181 LITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMVGVMANILTIAILAALID 240 Query: 241 QVILENLKHRLLRYQYV 257 QVILENLKHRLL+YQYV Sbjct: 241 QVILENLKHRLLKYQYV 257 >ref|YP_004754195.1| putative permease [Collimonas fungivorans Ter331] gb|AEK63372.1| putative permease of ABC transporter [Collimonas fungivorans Ter331] Length = 257 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 225/257 (87%), Positives = 237/257 (92%) Query: 1 MSSQRRVTGYRKKFAMVLAIAFILLMWQIAAWSLPDFLMPGVPTVLARLWNEVQTPAFRI 60 MS+Q R+ GYRKK AM+LAI I L+WQIAAWSLPDFLMPGV VL RLW E TP FR Sbjct: 1 MSTQSRLVGYRKKLAMLLAILLIFLLWQIAAWSLPDFLMPGVLPVLGRLWQEALTPEFRT 60 Query: 61 ALWGSLTRLGGGYGAALLLGIGFGLIGAVLFFFREVLKSAIIILQSIPSIAWVPLFLILM 120 ALWGSLTRLGGGY AA+L GIGFGL+GAVLFFFREVLKSAIIILQSIPSIAWVPLFLILM Sbjct: 61 ALWGSLTRLGGGYAAAMLFGIGFGLVGAVLFFFREVLKSAIIILQSIPSIAWVPLFLILM 120 Query: 121 GFGNLPIIVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLGMLRRVYLPAVMPE 180 GFGNLPI+VVVA+AAFFPAALSVMNATESVQQVHVSAARVMGA+R ML+RVYLPAVMPE Sbjct: 121 GFGNLPIMVVVAMAAFFPAALSVMNATESVQQVHVSAARVMGATRWDMLKRVYLPAVMPE 180 Query: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRTLAYSGETADMVGVMTNILTIAILAALID 240 LITGAQLAFGNAWRALISAEMLIGFGKGLGRTLAY+GETADMVGVMTNIL IAILAALID Sbjct: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRTLAYAGETADMVGVMTNILAIAILAALID 240 Query: 241 QVILENLKHRLLRYQYV 257 Q ILENLKHR+LRYQYV Sbjct: 241 QFILENLKHRVLRYQYV 257 >ref|YP_001172341.1| taurine ABC transporter, permease protein [Pseudomonas stutzeri A1501] ref|YP_004714093.1| taurine ABC transporter permease [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|ABP79499.1| taurine ABC transporter, permease protein [Pseudomonas stutzeri A1501] gb|AEA83747.1| taurine ABC transporter, permease protein [Pseudomonas stutzeri DSM 4166] gb|AEJ05004.1| taurine ABC transporter, permease protein [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 257 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 205/257 (79%), Positives = 226/257 (87%) Query: 1 MSSQRRVTGYRKKFAMVLAIAFILLMWQIAAWSLPDFLMPGVPTVLARLWNEVQTPAFRI 60 MS RR+TG +K A+VLAI FILL+WQ AAWSLP FLMPG+PTV+ RL +Q P FR Sbjct: 1 MSQARRLTGPKKYLAVVLAILFILLIWQAAAWSLPAFLMPGIPTVVERLITTIQQPEFRD 60 Query: 61 ALWGSLTRLGGGYGAALLLGIGFGLIGAVLFFFREVLKSAIIILQSIPSIAWVPLFLILM 120 L+GS++RLG GYG ALL GIGFGL+G VLFFFRE+L+SAI+ILQSIPSIAWVPLFLI+M Sbjct: 61 GLYGSMSRLGSGYGFALLFGIGFGLVGGVLFFFREILRSAIVILQSIPSIAWVPLFLIVM 120 Query: 121 GFGNLPIIVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLGMLRRVYLPAVMPE 180 GFGNLPIIVVVA+AAFFP ALSVMNATESVQ VHVSAARVMGASR +LRRVYLPAVMPE Sbjct: 121 GFGNLPIIVVVALAAFFPMALSVMNATESVQPVHVSAARVMGASRWQLLRRVYLPAVMPE 180 Query: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRTLAYSGETADMVGVMTNILTIAILAALID 240 LITGAQLAFGNAWRALISAEMLIGFG+GLGR+LAYSGE ADMVGVM NIL IAILA LID Sbjct: 181 LITGAQLAFGNAWRALISAEMLIGFGQGLGRSLAYSGEIADMVGVMMNILVIAILATLID 240 Query: 241 QVILENLKHRLLRYQYV 257 QV+LE K R+LRYQYV Sbjct: 241 QVVLEKFKQRMLRYQYV 257 >ref|YP_003979459.1| binding-protein-dependent transporter inner membrane component family protein 39 [Achromobacter xylosoxidans A8] gb|ADP16744.1| binding-protein-dependent transport system inner membrane component family protein 39 [Achromobacter xylosoxidans A8] Length = 257 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/257 (78%), Positives = 228/257 (88%) Query: 1 MSSQRRVTGYRKKFAMVLAIAFILLMWQIAAWSLPDFLMPGVPTVLARLWNEVQTPAFRI 60 MS+ RVTG RK FA VL + FIL +WQ+AA++LPDFLMPGVP V+ RL+ ++ +F Sbjct: 1 MSASTRVTGARKHFAGVLGVLFILALWQLAAFALPDFLMPGVPAVVERLFEDLGKQSFHQ 60 Query: 61 ALWGSLTRLGGGYGAALLLGIGFGLIGAVLFFFREVLKSAIIILQSIPSIAWVPLFLILM 120 +L G+L RLG GYG AL GIGFGL+ AVLFFFREVL+SAI+ILQSIPSIAWVPLFLI+M Sbjct: 61 SLLGTLGRLGAGYGLALAAGIGFGLVAAVLFFFREVLRSAIVILQSIPSIAWVPLFLIVM 120 Query: 121 GFGNLPIIVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLGMLRRVYLPAVMPE 180 GFGN PIIVVVA++AFFPAALSVMNATESVQ+VHVSAARVMGA+R G+++RVYLPAVMPE Sbjct: 121 GFGNTPIIVVVALSAFFPAALSVMNATESVQRVHVSAARVMGATRWGLVKRVYLPAVMPE 180 Query: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRTLAYSGETADMVGVMTNILTIAILAALID 240 LITGAQLAFGNAWRALISAEMLIGFGKGLGR+LAYSGE ADM GVMTNIL IA+LAALID Sbjct: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRSLAYSGEIADMTGVMTNILVIAVLAALID 240 Query: 241 QVILENLKHRLLRYQYV 257 Q +LENLKHRLLRYQYV Sbjct: 241 QFVLENLKHRLLRYQYV 257 >ref|NP_880426.1| putative permease of ABC transporter [Bordetella pertussis Tohama I] emb|CAE41996.1| putative permease of ABC transporter [Bordetella pertussis Tohama I] gb|AEE67042.1| putative permease of ABC transporter [Bordetella pertussis CS] Length = 257 Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/257 (78%), Positives = 224/257 (87%) Query: 1 MSSQRRVTGYRKKFAMVLAIAFILLMWQIAAWSLPDFLMPGVPTVLARLWNEVQTPAFRI 60 MSS RVTG RK A VL + FIL +WQ AAW LPDFLMPGVPTV RL ++ +F Sbjct: 1 MSSSTRVTGARKHLAGVLGVLFILALWQAAAWVLPDFLMPGVPTVAQRLVEDLGQASFHQ 60 Query: 61 ALWGSLTRLGGGYGAALLLGIGFGLIGAVLFFFREVLKSAIIILQSIPSIAWVPLFLILM 120 +L G+L RLG GYG AL GIGFGL+ AVLFFFREVL+SAI+ILQSIPSIAWVPLFLI+M Sbjct: 61 SLLGTLGRLGAGYGLALAAGIGFGLVAAVLFFFREVLRSAIVILQSIPSIAWVPLFLIVM 120 Query: 121 GFGNLPIIVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLGMLRRVYLPAVMPE 180 GFGN PIIVVVA++AFFPAALSVMNATESVQ+VHVSAARVMGA+R G+++RVYLPAVMPE Sbjct: 121 GFGNTPIIVVVALSAFFPAALSVMNATESVQRVHVSAARVMGATRWGLIKRVYLPAVMPE 180 Query: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRTLAYSGETADMVGVMTNILTIAILAALID 240 LITGAQLAFGNAWRALISAEMLIGFGKGLGR+LAYSGE ADM GVMTNIL IA+LAALID Sbjct: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRSLAYSGEIADMTGVMTNILVIAVLAALID 240 Query: 241 QVILENLKHRLLRYQYV 257 Q +LENLKHRLLRYQYV Sbjct: 241 QFVLENLKHRLLRYQYV 257