BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0063.p         (128 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751404.1| putative transcription regulator transcripti...   174   3e-42
ref|YP_003774580.1| LacI family transcription regulator protein ...   168   3e-40
ref|YP_001020165.1| LacI family transcription regulator [Methyli...   160   8e-38
ref|YP_550225.1| LacI family transcription regulator [Polaromona...   159   1e-37
ref|YP_981368.1| regulatory protein, LacI [Polaromonas naphthale...   149   1e-34

>ref|YP_004751404.1| putative transcription regulator transcription regulator protein
           [Collimonas fungivorans Ter331]
 gb|AEK60581.1| putative transcription regulator transcription regulator protein
           [Collimonas fungivorans Ter331]
          Length = 361

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 102/128 (79%)

Query: 1   MAVAGRTEVPQCMVPAPTTLGSGRTGLADLLGQDGAIDGVFCSSDILAMGVMIEAQVRGI 60
           MA    +EVP C+V APTTLG+GR+GL +LL +   ID VFCSSD+LA+GVMIEAQ   I
Sbjct: 234 MARPQESEVPACLVTAPTTLGNGRSGLRELLQRAPDIDAVFCSSDLLALGVMIEAQASAI 293

Query: 61  AIPSQLALMGFGDLSFSRDLHPQLTTVRIDGTGIGKAAARFIIERAEGREVPERVHDIGF 120
           AIP QLA++G GDLSFSRDLHP LTTVRIDGT IG  AARFII+R+EG+ V E + D+GF
Sbjct: 294 AIPGQLAVIGLGDLSFSRDLHPPLTTVRIDGTAIGSTAARFIIDRSEGKSVAEPICDLGF 353

Query: 121 TIIERQSV 128
           TIIER SV
Sbjct: 354 TIIERASV 361


>ref|YP_003774580.1| LacI family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62672.1| LacI family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 365

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/123 (69%), Positives = 98/123 (79%)

Query: 5   GRTEVPQCMVPAPTTLGSGRTGLADLLGQDGAIDGVFCSSDILAMGVMIEAQVRGIAIPS 64
           GR  +P   V APTTLG GR GLA+LL     +D +FCSSD+LA+GVMIEAQ RGIAIP 
Sbjct: 242 GRAPLPMHHVTAPTTLGQGRQGLAELLQAQPDLDAIFCSSDLLALGVMIEAQSRGIAIPE 301

Query: 65  QLALMGFGDLSFSRDLHPQLTTVRIDGTGIGKAAARFIIERAEGREVPERVHDIGFTIIE 124
           QLA++GFGDL FSRDL P+LTTVRIDGTGIG+ AARFII+RA G EV ERV D+GF+II 
Sbjct: 302 QLAVVGFGDLEFSRDLQPRLTTVRIDGTGIGQRAARFIIDRAAGIEVAERVVDVGFSIIA 361

Query: 125 RQS 127
           R S
Sbjct: 362 RDS 364


>ref|YP_001020165.1| LacI family transcription regulator [Methylibium petroleiphilum
           PM1]
 gb|ABM93930.1| transcriptional regulator, LacI family [Methylibium petroleiphilum
           PM1]
          Length = 347

 Score =  160 bits (404), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 97/120 (80%)

Query: 8   EVPQCMVPAPTTLGSGRTGLADLLGQDGAIDGVFCSSDILAMGVMIEAQVRGIAIPSQLA 67
           E+P   VPAPTTLGSGR+GLA LL +   +D VFCSSD+LA+GV++EA  RGIA+P QLA
Sbjct: 227 EIPALRVPAPTTLGSGRSGLARLLAERPEVDAVFCSSDMLALGVLVEAAARGIAVPQQLA 286

Query: 68  LMGFGDLSFSRDLHPQLTTVRIDGTGIGKAAARFIIERAEGREVPERVHDIGFTIIERQS 127
           ++GFGDL F+ D  P L+TVRIDGTGIG+ AARFI++RA+GR V E++ D+GF +IER S
Sbjct: 287 VVGFGDLGFAADTQPALSTVRIDGTGIGQRAARFIVDRADGRTVGEKIVDVGFRVIERGS 346


>ref|YP_550225.1| LacI family transcription regulator [Polaromonas sp. JS666]
 gb|ABE45327.1| transcriptional regulator, LacI family [Polaromonas sp. JS666]
          Length = 347

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 96/123 (78%)

Query: 5   GRTEVPQCMVPAPTTLGSGRTGLADLLGQDGAIDGVFCSSDILAMGVMIEAQVRGIAIPS 64
           G  EV    VPAPTT  SGR+ LA+L+   G ID VFCSSD+LA+GV+++AQ  GIA+P 
Sbjct: 224 GLPEVRMVTVPAPTTAKSGRSALAELMRDAGDIDAVFCSSDLLALGVLMQAQASGIAVPG 283

Query: 65  QLALMGFGDLSFSRDLHPQLTTVRIDGTGIGKAAARFIIERAEGREVPERVHDIGFTIIE 124
           QLA++GFGDL F+ DL+P LTTVRIDGT IG+ AARFI+ERAEGR V  RV DIGFTI+E
Sbjct: 284 QLAIVGFGDLEFAADLNPALTTVRIDGTAIGRQAARFIVERAEGRPVEPRVVDIGFTIVE 343

Query: 125 RQS 127
           R S
Sbjct: 344 RGS 346


>ref|YP_981368.1| regulatory protein, LacI [Polaromonas naphthalenivorans CJ2]
 gb|ABM36447.1| transcriptional regulator, LacI family [Polaromonas
           naphthalenivorans CJ2]
          Length = 332

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 89/118 (75%)

Query: 10  PQCMVPAPTTLGSGRTGLADLLGQDGAIDGVFCSSDILAMGVMIEAQVRGIAIPSQLALM 69
           P  +VPAPTTLGSGR GLA +L      D VFCSSD+LA+GV+IEAQ RG+A+P QL ++
Sbjct: 214 PTHLVPAPTTLGSGRAGLAAVLAAHPHTDAVFCSSDMLALGVLIEAQARGLAVPRQLGVV 273

Query: 70  GFGDLSFSRDLHPQLTTVRIDGTGIGKAAARFIIERAEGREVPERVHDIGFTIIERQS 127
           G GDL  +  L P LTTVRIDGT IG+ AA++I+ERAEGR V E + DIGF IIER S
Sbjct: 274 GLGDLDLAASLQPALTTVRIDGTRIGRTAAQYIVERAEGRSVSEPIVDIGFEIIERAS 331