BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0062.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774580.1| LacI family transcription regulator protein ... 256 7e-67 ref|YP_001020165.1| LacI family transcription regulator [Methyli... 251 4e-65 ref|YP_004751404.1| putative transcription regulator transcripti... 249 7e-65 ref|YP_550225.1| LacI family transcription regulator [Polaromona... 243 7e-63 ref|YP_551311.1| LacI family transcription regulator [Polaromona... 224 3e-57 >ref|YP_003774580.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62672.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 365 Score = 256 bits (654), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 132/162 (81%), Positives = 144/162 (88%), Gaps = 1/162 (0%) Query: 3 APAPVVRKGRKGAG-LTLRDVARLAGVAPITASRALNTPDAVSETVLKKVRDAVERTGYV 61 A +P R RK AG +TLRDVA+LAGVAPITASRALNTP AVS VL+KVR+AVE+TGYV Sbjct: 21 AASPRRRGSRKSAGGVTLRDVAQLAGVAPITASRALNTPSAVSPKVLQKVREAVEKTGYV 80 Query: 62 PNLLAGGLASKKSRLVAAVVPTIVGPIFLETVQSLTEALADAGYQLMLGQSGYENSREDA 121 PNLLAGGLAS KSRLVA VVPT++GP+F E V +LTE LA AGYQ+MLGQSGYENSREDA Sbjct: 81 PNLLAGGLASNKSRLVAVVVPTVIGPVFQEIVHTLTETLAAAGYQVMLGQSGYENSREDA 140 Query: 122 LLEAIIGRRPDGVVLTGIMRSPESRKRLLASGIPVVETWDLT 163 LLEAIIGRRPDGVVLTGIMRS E+RKRLLASGIPVVETWDLT Sbjct: 141 LLEAIIGRRPDGVVLTGIMRSAEARKRLLASGIPVVETWDLT 182 >ref|YP_001020165.1| LacI family transcription regulator [Methylibium petroleiphilum PM1] gb|ABM93930.1| transcriptional regulator, LacI family [Methylibium petroleiphilum PM1] Length = 347 Score = 251 bits (640), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 129/164 (78%), Positives = 142/164 (86%), Gaps = 1/164 (0%) Query: 1 MTAP-APVVRKGRKGAGLTLRDVARLAGVAPITASRALNTPDAVSETVLKKVRDAVERTG 59 MTAP A R+ R+G G+TL DVARLAGV+PITASRALNTPD V+ L +VR+AV RTG Sbjct: 1 MTAPDATAPRRSRRGGGITLGDVARLAGVSPITASRALNTPDQVAPDKLARVREAVARTG 60 Query: 60 YVPNLLAGGLASKKSRLVAAVVPTIVGPIFLETVQSLTEALADAGYQLMLGQSGYENSRE 119 YVPN LAGGLAS +SRLVAAVVPTI GP+F+E VQSLT ALADAGYQLMLGQSGY SRE Sbjct: 61 YVPNRLAGGLASARSRLVAAVVPTIAGPVFMEMVQSLTSALADAGYQLMLGQSGYTESRE 120 Query: 120 DALLEAIIGRRPDGVVLTGIMRSPESRKRLLASGIPVVETWDLT 163 DALLEAIIGRRPDG+VLTGI+ SPE R+RLLASGIPVVETWDLT Sbjct: 121 DALLEAIIGRRPDGIVLTGILHSPEGRRRLLASGIPVVETWDLT 164 >ref|YP_004751404.1| putative transcription regulator transcription regulator protein [Collimonas fungivorans Ter331] gb|AEK60581.1| putative transcription regulator transcription regulator protein [Collimonas fungivorans Ter331] Length = 361 Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 125/156 (80%), Positives = 143/156 (91%), Gaps = 1/156 (0%) Query: 9 RKG-RKGAGLTLRDVARLAGVAPITASRALNTPDAVSETVLKKVRDAVERTGYVPNLLAG 67 R+G RK G TLRDVA+LAGVAPITASRALNTPDAVS VL+KV+ AV +TGYVPNLLAG Sbjct: 22 RQGSRKAGGFTLRDVAKLAGVAPITASRALNTPDAVSAKVLQKVQAAVLQTGYVPNLLAG 81 Query: 68 GLASKKSRLVAAVVPTIVGPIFLETVQSLTEALADAGYQLMLGQSGYENSREDALLEAII 127 LAS+KSRLVAAVVPT+ GP+FL+TV++LT+ LA AGYQ+MLGQSGYENSREDALL+AII Sbjct: 82 ALASQKSRLVAAVVPTLSGPMFLQTVEALTDTLAGAGYQVMLGQSGYENSREDALLDAII 141 Query: 128 GRRPDGVVLTGIMRSPESRKRLLASGIPVVETWDLT 163 GRRPDG+VLTGI RSP++R+RLLASGIPVVETWDLT Sbjct: 142 GRRPDGIVLTGITRSPQARRRLLASGIPVVETWDLT 177 >ref|YP_550225.1| LacI family transcription regulator [Polaromonas sp. JS666] gb|ABE45327.1| transcriptional regulator, LacI family [Polaromonas sp. JS666] Length = 347 Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 122/147 (82%), Positives = 134/147 (91%) Query: 17 LTLRDVARLAGVAPITASRALNTPDAVSETVLKKVRDAVERTGYVPNLLAGGLASKKSRL 76 +TL DVA+LAGVAPITASRALNTP VS VLKKV DAV+RTGYVPN LAGGLAS +SRL Sbjct: 22 VTLHDVAKLAGVAPITASRALNTPTQVSAEVLKKVTDAVQRTGYVPNRLAGGLASSRSRL 81 Query: 77 VAAVVPTIVGPIFLETVQSLTEALADAGYQLMLGQSGYENSREDALLEAIIGRRPDGVVL 136 VAAVVPT+ GP+FLETVQ+LT+ALA+ GYQLMLGQSGY +SREDALLEAIIGRRPDG+VL Sbjct: 82 VAAVVPTLNGPVFLETVQALTDALAEQGYQLMLGQSGYVDSREDALLEAIIGRRPDGIVL 141 Query: 137 TGIMRSPESRKRLLASGIPVVETWDLT 163 TGIM SPE RKRLLA+GIPVVETWDLT Sbjct: 142 TGIMHSPEGRKRLLAAGIPVVETWDLT 168 >ref|YP_551311.1| LacI family transcription regulator [Polaromonas sp. JS666] gb|ABE46413.1| transcriptional regulator, LacI family [Polaromonas sp. JS666] Length = 343 Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 113/156 (72%), Positives = 133/156 (85%), Gaps = 1/156 (0%) Query: 9 RKGRKG-AGLTLRDVARLAGVAPITASRALNTPDAVSETVLKKVRDAVERTGYVPNLLAG 67 R R G G+TL DVA+LAGV+ IT SRALNTP AVS L++VR A+ R+GYVPNL+AG Sbjct: 9 RAARPGTGGITLNDVAKLAGVSAITVSRALNTPAAVSPDTLERVRGAIARSGYVPNLVAG 68 Query: 68 GLASKKSRLVAAVVPTIVGPIFLETVQSLTEALADAGYQLMLGQSGYENSREDALLEAII 127 GLAS +SRLVAA+VPTI GP+FLET+Q+LT+ALA+AG QLMLGQSGY +REDALL+AII Sbjct: 69 GLASNRSRLVAALVPTIAGPVFLETIQALTDALAEAGCQLMLGQSGYGGAREDALLDAII 128 Query: 128 GRRPDGVVLTGIMRSPESRKRLLASGIPVVETWDLT 163 GRRPDG+VL GIM S E R+RLLASGIPVVETWD+T Sbjct: 129 GRRPDGIVLIGIMHSAEGRRRLLASGIPVVETWDIT 164