BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0060.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773491.1| hypothetical protein Hsero_0053 [Herbaspiril...   109   1e-22

>ref|YP_003773491.1| hypothetical protein Hsero_0053 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61583.1| hypothetical protein Hsero_0053 [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 67/92 (72%), Gaps = 1/92 (1%)

Query: 25  PRPHRRRERLDITLLEIDPREVVEGMVLDNGMFLAPDPIPVGTMRETCPHCEGVALQLVL 84
           PR  +R   L + L+E+DPREV++G ++  G +L  D IPVG MRE CPHCEGVALQLVL
Sbjct: 28  PRYEQRTTPLLLKLVELDPREVIDG-IMTPGGYLTADVIPVGPMREACPHCEGVALQLVL 86

Query: 85  RRHQVKRSHLFCDHCTRCYDALCDGGYSILGI 116
           R   V+RSHLFC  CTR YDAL D GYS+L +
Sbjct: 87  RHRHVRRSHLFCRVCTRVYDALNDSGYSVLTV 118