BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0048.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08276517.1| transcriptional regulator, GntR family [Oxalo... 334 8e-90 ref|YP_003911174.1| GntR family transcriptional regulator [Burkh... 263 2e-68 ref|ZP_02882906.1| transcriptional regulator, GntR family [Burkh... 259 4e-67 ref|YP_001860702.1| GntR family transcriptional regulator [Burkh... 245 4e-63 emb|CAZ90225.1| putative transcriptional regulator, GntR family ... 219 3e-55 >ref|ZP_08276517.1| transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF30013.1| transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 334 bits (857), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 159/243 (65%), Positives = 190/243 (78%), Gaps = 4/243 (1%) Query: 17 PAKSSSLPEYVYARLREDIFEMRLLPGDQVTETEVAAYFKVSRTPVREALQRLQSDGLMQ 76 P KSSSLP+YVY LR+DIF +RLLPGDQVTE+++AAYF VSRTPVREALQRLQ DGLMQ Sbjct: 11 PPKSSSLPDYVYGNLRDDIFALRLLPGDQVTESDIAAYFDVSRTPVREALQRLQRDGLMQ 70 Query: 77 GYVRGGWEVVPMDFKRFADLYELRQLIEVHAVRRLCAGHADGKRAIDMAQIEALKADWCV 136 GYVRGGWEVVP+DFKR+ DL+E+R++IE++AV RLC ID + I+ L+ WC Sbjct: 71 GYVRGGWEVVPVDFKRYEDLFEMRRVIELYAVTRLCQEGV----GIDQSLIDGLQLTWCC 126 Query: 137 PVEQRLTDGRAAAALDEAFHQTLVRATGNQEMASAFDRLTDRIRIVRRLDFVYGDCVGST 196 PV+QRL DG A LDE FHQTLVRATGN EMA+ FDRLTDR+RIVRRLDF+YGDCV T Sbjct: 127 PVDQRLVDGLQVATLDEGFHQTLVRATGNLEMATTFDRLTDRVRIVRRLDFLYGDCVQLT 186 Query: 197 YEEHAAILAQIDARAGDEAVRLITEHIDGSHAEVNQITLHRLHSARASAATERLPYVTVR 256 Y+EHAAIL I R A+ L+T HI+ SHA V Q+TLH LH+ R A+ ERLPY+ V+ Sbjct: 187 YDEHAAILGAITTRDSAAALGLMTAHIEDSHASVRQLTLHHLHNVRVGASAERLPYLPVK 246 Query: 257 VMR 259 + R Sbjct: 247 MQR 249 >ref|YP_003911174.1| GntR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61883.1| transcriptional regulator, GntR family [Burkholderia sp. CCGE1003] Length = 286 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 136/253 (53%), Positives = 171/253 (67%), Gaps = 2/253 (0%) Query: 6 DPSLMDSVAAEPAKS-SSLPEYVYARLREDIFEMRLLPGDQVTETEVAAYFKVSRTPVRE 64 +P ++ S + +S SS ++VY +R+DIF+MRLLPGD++TE +A F VSRTP RE Sbjct: 31 NPFILGSCVKDTTRSTSSRADHVYFSVRDDIFDMRLLPGDRLTEGSIADRFGVSRTPARE 90 Query: 65 ALQRLQSDGLMQGYVRGGWEVVPMDFKRFADLYELRQLIEVHAVRRLCAGHADGKRAIDM 124 ALQRLQSDGLM+GYVRGGWEVVP+DFKRF DLYE+R+LIE ++V RL G Sbjct: 91 ALQRLQSDGLMRGYVRGGWEVVPIDFKRFEDLYEMRKLIETYSVSRLF-GPDRSLSETAR 149 Query: 125 AQIEALKADWCVPVEQRLTDGRAAAALDEAFHQTLVRATGNQEMASAFDRLTDRIRIVRR 184 ++ L W VP QR+ DGR ALDEAFH+ LV A GN E+ +A R+TDRIR+VRR Sbjct: 150 QMLDRLDGIWNVPEAQRVRDGREMVALDEAFHEALVSAAGNAELTAAMQRVTDRIRVVRR 209 Query: 185 LDFVYGDCVGSTYEEHAAILAQIDARAGDEAVRLITEHIDGSHAEVNQITLHRLHSARAS 244 LD VYGDC+ TY+EH AILA I A D AV L+ HI+GS AEV +T RL AR + Sbjct: 210 LDLVYGDCIDETYDEHVAILAAIRDLAADRAVELLGRHIEGSRAEVRTLTTERLQRARTA 269 Query: 245 AATERLPYVTVRV 257 + PY R+ Sbjct: 270 SEPHSAPYAPPRL 282 >ref|ZP_02882906.1| transcriptional regulator, GntR family [Burkholderia graminis C4D1M] gb|EDT11190.1| transcriptional regulator, GntR family [Burkholderia graminis C4D1M] Length = 248 Score = 259 bits (661), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 135/242 (55%), Positives = 167/242 (69%), Gaps = 3/242 (1%) Query: 20 SSSLPEYVYARLREDIFEMRLLPGDQVTETEVAAYFKVSRTPVREALQRLQSDGLMQGYV 79 SSS ++VY +R+DIFEMRLLPGD++TE +A F VSRTP REALQRLQSDGLM+GYV Sbjct: 8 SSSRADHVYYSVRDDIFEMRLLPGDRLTEGSIAERFGVSRTPAREALQRLQSDGLMRGYV 67 Query: 80 RGGWEVVPMDFKRFADLYELRQLIEVHAVRRLCAGHADGKRAIDMAQI-EALKADWCVPV 138 RGGWEVVP+D KRF DLYE+R+LIE AV RL A AD + + Q+ + L A W VP Sbjct: 68 RGGWEVVPIDLKRFEDLYEMRKLIETFAVGRLVA--ADSSLSGSVQQVLDRLDATWKVPR 125 Query: 139 EQRLTDGRAAAALDEAFHQTLVRATGNQEMASAFDRLTDRIRIVRRLDFVYGDCVGSTYE 198 QR+ DGR ALDEAFHQ LV A N E+++A R+TDRIR++RRLD VYGDC+ TY+ Sbjct: 126 AQRIRDGREMVALDEAFHQALVTAADNAELSAAMQRVTDRIRVMRRLDLVYGDCIDETYD 185 Query: 199 EHAAILAQIDARAGDEAVRLITEHIDGSHAEVNQITLHRLHSARASAATERLPYVTVRVM 258 EH AIL I R + +V L+ HI+GS +EV +T RL AR + PY R Sbjct: 186 EHIAILDAIRNRETERSVALVGRHIEGSRSEVRGLTAERLQHARTAMEPHGAPYAPPRSR 245 Query: 259 RS 260 R+ Sbjct: 246 RT 247 >ref|YP_001860702.1| GntR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC73656.1| transcriptional regulator, GntR family [Burkholderia phymatum STM815] Length = 260 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 132/261 (50%), Positives = 167/261 (63%), Gaps = 6/261 (2%) Query: 5 PDPSLMDSVAAEPAKSS----SLPEYVYARLREDIFEMRLLPGDQVTETEVAAYFKVSRT 60 PD L + PA +S + + VY LREDIF+M LLPGD++TE +A F VSRT Sbjct: 2 PDIKLNMTPDERPAIASHATLTRADRVYYALREDIFDMHLLPGDRLTEGAIAERFSVSRT 61 Query: 61 PVREALQRLQSDGLMQGYVRGGWEVVPMDFKRFADLYELRQLIEVHAVRRLCAGHADGKR 120 P REALQRLQSDGLMQGYVRGGWEVVP+D KRF DLYE+RQ+IE AVR+LC A Sbjct: 62 PAREALQRLQSDGLMQGYVRGGWEVVPIDNKRFDDLYEMRQMIETFAVRKLCDNEAPPPG 121 Query: 121 AIDMAQIEALKADWCVPVEQRLTDGRAAAALDEAFHQTLVRATGNQEMASAFDRLTDRIR 180 + ++ L W V +R+TDGR LDEAFH L+ A GN+E+ S R+TDRIR Sbjct: 122 LHPL--LDTLDGVWKVGHARRITDGRKLVELDEAFHHALIAAAGNEELTSTMQRVTDRIR 179 Query: 181 IVRRLDFVYGDCVGSTYEEHAAILAQIDARAGDEAVRLITEHIDGSHAEVNQITLHRLHS 240 +VRRLD V+GD + TY+EHAAIL I G ++V L++ HI GS A V +T+ RL + Sbjct: 180 VVRRLDLVHGDGIAETYDEHAAILDAIRRGDGAQSVELVSRHIGGSQASVRGLTIQRLLT 239 Query: 241 ARASAATERLPYVTVRVMRSF 261 AR + E + R R+ Sbjct: 240 ARTATGREATAHAPARPRRTI 260 >emb|CAZ90225.1| putative transcriptional regulator, GntR family [Thiomonas sp. 3As] Length = 249 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 123/232 (53%), Positives = 156/232 (67%), Gaps = 4/232 (1%) Query: 12 SVAAEPA-KSSSLPEYVYARLREDIFEMRLLPGDQVTETEVAAYFKVSRTPVREALQRLQ 70 ++ A+PA K++S E +YARLRE++FE LLPG + TETE+A ++ VSRTPVREAL RLQ Sbjct: 12 AIKAKPAPKAASRAEEIYARLREEVFEFHLLPGQRFTETELAEHYVVSRTPVREALLRLQ 71 Query: 71 SDGLMQGYVRGGWEVVPMDFKRFADLYELRQLIEVHAVRRLCAGHADGKRAIDMAQIEAL 130 ++GL++GY R GWEVVP+DF RF LYELR+L+EVHAVR+L + ++AL Sbjct: 72 AEGLVRGYFRSGWEVVPIDFARFDHLYELRKLVEVHAVRKLSMRELATE---TQTMLDAL 128 Query: 131 KADWCVPVEQRLTDGRAAAALDEAFHQTLVRATGNQEMASAFDRLTDRIRIVRRLDFVYG 190 A W V RL+D R + LDEAFH LV A GN E+ +TDRIRI+RRLDF Y Sbjct: 129 AASWIVDKSARLSDARKISLLDEAFHTNLVAAAGNPEILRVHAEITDRIRIIRRLDFTYT 188 Query: 191 DCVGSTYEEHAAILAQIDARAGDEAVRLITEHIDGSHAEVNQITLHRLHSAR 242 V +TY+EHAAIL I D+A LI HID S E +ITLHRL + R Sbjct: 189 HRVSTTYDEHAAILRAIQRHKPDQAELLIRAHIDRSQIETRKITLHRLQNIR 240