BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0039.p (215 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004353004.1| bifunctional aspartate racemase/ glutamate r... 236 1e-60 ref|YP_001890401.1| aspartate racemase [Burkholderia phytofirman... 236 2e-60 ref|YP_004231679.1| aspartate racemase [Burkholderia sp. CCGE100... 233 1e-59 ref|YP_003610026.1| aspartate racemase [Burkholderia sp. CCGE100... 232 3e-59 ref|ZP_03699470.1| aspartate racemase [Lutiella nitroferrum 2002... 222 4e-56 >ref|YP_004353004.1| bifunctional aspartate racemase/ glutamate racemase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68000.1| Putative bifunctional protein: aspartate racemase; glutamate racemase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 486 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 119/207 (57%), Positives = 147/207 (71%), Gaps = 8/207 (3%) Query: 1 VVEHNPKIPDRTDNLIGDGADPTVAIYAACKRLESDNADIIAIPCNTAHAFVERIQSYLS 60 VVE NP+IPDRT NL+ D DPT+A+YAACKRLES A+ IAIPCNTAHAFVERIQ++L Sbjct: 275 VVEQNPQIPDRTANLLRDETDPTMAMYAACKRLESAGANAIAIPCNTAHAFVERIQAHLR 334 Query: 61 IPIVNMLSETVSYIKKRHGDKTCIGLLATSGTIASGVYQQAVDQNGERSNGHGKFSMIVP 120 +PIVNMLSETV +I + +G IGLLATSGT+ S VY QA Q G ++ P Sbjct: 335 VPIVNMLSETVEWIARTYGSGKAIGLLATSGTVQSQVYHQAARQAG--------LQVLTP 386 Query: 121 DAGHQAMVMDVIYGVQGVKAGFVNDDVRAKLQRAIAHLVANGADVIVLGCTELPLLIAQD 180 +QAMVMD IYG +G+KAGF + +L A HL GA V++LGCTELPL++A Sbjct: 387 GVDYQAMVMDAIYGPRGIKAGFTQGLCKEQLLLAAEHLCELGAGVLILGCTELPLVLAHC 446 Query: 181 DKFAVAGKRVPVLDPTEILARRCVALA 207 + F + G RV ++DPT ILA+RCVALA Sbjct: 447 EAFEINGHRVALVDPTMILAQRCVALA 473 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 14/175 (8%) Query: 26 IYAACKRLESDNADIIAIPCNTAHAFVERIQSYLSIPIVNMLSETVSYIKKRHGDKTCIG 85 ++ CK E D + +PC +H F I+ L IP+++M++ ++ KT +G Sbjct: 65 VFQVCKSFEDSGFDAVMLPCFASHTFRAEIEEELGIPVLDMMAALTRHVSHTVPPKTTLG 124 Query: 86 LLATSGTIASGVYQQAVDQNGERSNGHGKFSMIVPDAGHQAMVMDVIYGVQGVKAGFVND 145 ++A+ G++++ ++ F ++ PDA QA +M+ +YG+ G+K G + Sbjct: 125 VIASDFVRHCGLFERHFGKD---------FQIVYPDADAQAGLMEAMYGLNGIKDGHLEG 175 Query: 146 DVRAKLQRAIAHLVANGADVIVLGCTELPLLIAQDDKFAVAGKRVPVLDPTEILA 200 + +A L A GA VI+ G TEL L+ A + + + VLD EI A Sbjct: 176 VPLEAVYQACLSLQAQGATVILPGMTELSLVCADLQR-----RGITVLDVNEIYA 225 >ref|YP_001890401.1| aspartate racemase [Burkholderia phytofirmans PsJN] gb|ACD21030.1| aspartate racemase [Burkholderia phytofirmans PsJN] Length = 497 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 116/208 (55%), Positives = 151/208 (72%), Gaps = 8/208 (3%) Query: 1 VVEHNPKIPDRTDNLIGDGADPTVAIYAACKRLESDNADIIAIPCNTAHAFVERIQSYLS 60 ++E NP+IPDRT+NLIGDG DPT+++YA CK+LES +AD+IAIPCNTAHAFVERIQ YLS Sbjct: 282 LIEQNPQIPDRTENLIGDGPDPTISLYATCKKLESGDADLIAIPCNTAHAFVERIQPYLS 341 Query: 61 IPIVNMLSETVSYIKKRHGDKTCIGLLATSGTIASGVYQQAVDQNGERSNGHGKFSMIVP 120 IPIVNML+ TV ++++ + +G+LATSGTIASGVY++A++ G R VP Sbjct: 342 IPIVNMLTVTVRHLRETYPALRSVGVLATSGTIASGVYEKALESEGLRQT--------VP 393 Query: 121 DAGHQAMVMDVIYGVQGVKAGFVNDDVRAKLQRAIAHLVANGADVIVLGCTELPLLIAQD 180 A QA VM+ IYG +GVKAGF + AI LVA G +VI+LGCTELPLL+ + Sbjct: 394 RAELQARVMEAIYGNKGVKAGFTTGQCLDDISAAIDGLVAEGVEVIILGCTELPLLLPKQ 453 Query: 181 DKFAVAGKRVPVLDPTEILARRCVALAS 208 G RV ++DPT++LAR+CV LA+ Sbjct: 454 SFVGTTGARVSLVDPTDVLARQCVILAT 481 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 14/181 (7%) Query: 26 IYAACKRLESDNADIIAIPCNTAHAFVERIQSYLSIPIVNMLSETVSYIKKRHGDKTCIG 85 I+ E + +PC +H F++ +++ + IV+M+ S+++++ IG Sbjct: 69 IFDMISGFEKRGVTTVVLPCFLSHTFIDELKANSPLQIVDMVEAVRSHVRRKFPTARRIG 128 Query: 86 LLATSGTIASGVYQQAVDQNGERSNGHGKFSMIVPDAGHQA-MVMDVIYGVQGVKAGFVN 144 +L + T G++ E+ +F +I P +V + +YG GVK+G ++ Sbjct: 129 VLTSDFTRRKGLF--------EKYFATPEFEVIHPRPREDIDLVTEAVYGANGVKSGNLS 180 Query: 145 DDVRAKLQRAIAHLVANGADVIVLGCTELPLLIAQDDKFAVAGKRVPVLDPTEILARRCV 204 A L+ A L+A GAD+IV G TE+ L+ + D F RVP++D A+ + Sbjct: 181 GRPVALLREACEDLIAQGADIIVPGLTEIALVAEEMDLF-----RVPLIDSNLAYAQYVI 235 Query: 205 A 205 A Sbjct: 236 A 236 >ref|YP_004231679.1| aspartate racemase [Burkholderia sp. CCGE1001] gb|ADX58619.1| aspartate racemase [Burkholderia sp. CCGE1001] Length = 487 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/207 (55%), Positives = 145/207 (70%), Gaps = 8/207 (3%) Query: 1 VVEHNPKIPDRTDNLIGDGADPTVAIYAACKRLESDNADIIAIPCNTAHAFVERIQSYLS 60 +VE NP+IPDRT+NLIG+GADPTV++YA CKRLE ADIIAIPCNTAHAFVERIQ YL Sbjct: 282 LVEQNPQIPDRTENLIGEGADPTVSLYATCKRLEEGGADIIAIPCNTAHAFVERIQPYLR 341 Query: 61 IPIVNMLSETVSYIKKRHGDKTCIGLLATSGTIASGVYQQAVDQNGERSNGHGKFSMIVP 120 +PIVNML+ETV Y+ + + + IG+LATSGT+ASGVY++A++ G I P Sbjct: 342 VPIVNMLTETVRYVHEHYPAQRKIGVLATSGTMASGVYEKALEAQG--------LQQIAP 393 Query: 121 DAGHQAMVMDVIYGVQGVKAGFVNDDVRAKLQRAIAHLVANGADVIVLGCTELPLLIAQD 180 + Q+ VM IYG QGVKAGF + A+ L+ G +VIVLGCTELPLL+ Sbjct: 394 EPALQSRVMQAIYGKQGVKAGFTAGACHDDIAAAVEGLIDEGVEVIVLGCTELPLLLPHA 453 Query: 181 DKFAVAGKRVPVLDPTEILARRCVALA 207 + G RV ++DPT +LARRC+A A Sbjct: 454 EFVGSGGARVTLIDPTHVLARRCIAYA 480 >ref|YP_003610026.1| aspartate racemase [Burkholderia sp. CCGE1002] gb|ADG20515.1| aspartate racemase [Burkholderia sp. CCGE1002] Length = 488 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 116/212 (54%), Positives = 149/212 (70%), Gaps = 8/212 (3%) Query: 1 VVEHNPKIPDRTDNLIGDGADPTVAIYAACKRLESDNADIIAIPCNTAHAFVERIQSYLS 60 +VE NP+IPDRT+NLIGDG DPT+++YA CK+LE+ AD+IAIPCNTAHAFVERIQ YL Sbjct: 285 LVEQNPQIPDRTENLIGDGPDPTISLYATCKKLETGGADLIAIPCNTAHAFVERIQPYLG 344 Query: 61 IPIVNMLSETVSYIKKRHGDKTCIGLLATSGTIASGVYQQAVDQNGERSNGHGKFSMIVP 120 +PIVNML+ TV Y+++ +G+LATSGT+ASGVYQ+A++ G R +VP Sbjct: 345 VPIVNMLTVTVRYLRESFPALRSVGVLATSGTLASGVYQKALESQGLRQ--------VVP 396 Query: 121 DAGHQAMVMDVIYGVQGVKAGFVNDDVRAKLQRAIAHLVANGADVIVLGCTELPLLIAQD 180 QA VMD IYG GVKAGF + L AI L+A G +VIVLGCTELPLL+ + Sbjct: 397 APALQARVMDAIYGKAGVKAGFTAGQCQQDLAAAIDGLIAEGVEVIVLGCTELPLLLREP 456 Query: 181 DKFAVAGKRVPVLDPTEILARRCVALASPQGR 212 G RV ++DPT++LA++CVA A+ R Sbjct: 457 YVIGANGARVSIVDPTDVLAKQCVACATAPPR 488 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 14/170 (8%) Query: 26 IYAACKRLESDNADIIAIPCNTAHAFVERIQSYLSIPIVNMLSETVSYIKKRHGDKTCIG 85 I+ E + +PC +H F++ +Q+ + IV+M+ S++++R +G Sbjct: 72 IFDLISSFEKRGVTTVVLPCFLSHTFIDELQANSPLQIVDMIDAVRSHVRRRFPAVRRVG 131 Query: 86 LLATSGTIASGVYQQAVDQNGERSNGHGKFSMIVPDAGHQA-MVMDVIYGVQGVKAGFVN 144 +LA++ T ++ E+ +F +I P G V + +YG GVK+G + Sbjct: 132 VLASAHTRRKRLF--------EKYFAAPEFEVIHPRIGDGTDFVTEAVYGEDGVKSGNLR 183 Query: 145 DDVRAKLQRAIAHLVANGADVIVLGCTELPLLIAQDDKFAVAGKRVPVLD 194 L+ A L+A GA+VIV G TE+ L+ + + RVP++D Sbjct: 184 GRPVELLRAACEDLIAQGANVIVPGLTEIALVADE-----LGALRVPLVD 228 >ref|ZP_03699470.1| aspartate racemase [Lutiella nitroferrum 2002] gb|EEG07650.1| aspartate racemase [Lutiella nitroferrum 2002] Length = 476 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 110/209 (52%), Positives = 142/209 (67%), Gaps = 8/209 (3%) Query: 1 VVEHNPKIPDRTDNLIGDGADPTVAIYAACKRLESDNADIIAIPCNTAHAFVERIQSYLS 60 VVE NP+IPDRT NL+ +G DPTVA+ A C+RLE+D A IAIPCNTAHAFV IQ YL+ Sbjct: 275 VVEQNPQIPDRTANLLHEGTDPTVALLATCQRLEADGAKAIAIPCNTAHAFVAAIQPYLT 334 Query: 61 IPIVNMLSETVSYIKKRHGDKTCIGLLATSGTIASGVYQQAVDQNGERSNGHGKFSMIVP 120 PIVNML+ET+++I+ R+ +GLLAT+GT+ S VY A +Q G R +I P Sbjct: 335 TPIVNMLTETIAHIRTRYSGDKPVGLLATAGTVQSRVYHAAAEQAGIR--------LIAP 386 Query: 121 DAGHQAMVMDVIYGVQGVKAGFVNDDVRAKLQRAIAHLVANGADVIVLGCTELPLLIAQD 180 + Q VM+ IYG GVKAGF + + L A HL GA++++LGCTELPLL Q Sbjct: 387 EPPFQDKVMNAIYGECGVKAGFTEGESKTDLLAAAEHLAQAGAEILILGCTELPLLFPQS 446 Query: 181 DKFAVAGKRVPVLDPTEILARRCVALASP 209 + + G+ V ++DPT+ILARRCV LA P Sbjct: 447 HEIELDGRTVALIDPTDILARRCVQLARP 475 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/184 (22%), Positives = 95/184 (51%), Gaps = 16/184 (8%) Query: 26 IYAACKRLESDNADIIAIPCNTAHAFVERIQSYLSIPIVNMLSETVSYIKKRHGDKTCIG 85 ++ A + + AD I +PC +H F + IQ+ L +P+++M++ + +++++ +G Sbjct: 66 VFQASQSFVARRADAILLPCFASHVFRDEIQTELEVPLLDMMAALLRHVRQKADPGRRLG 125 Query: 86 LLATSGTIASGVYQQAVDQNGERSNGHGKFSMIVPDAGHQAMVMDVIYGVQGVKAGFVND 145 +L + +G++++ D + ++++ P Q +M +YG +G++AG ++ Sbjct: 126 ILTSDFVREAGLFERYFDDH---------YALLYPSPDQQTSLMQAVYGERGLQAG--DE 174 Query: 146 DVRAKLQRAIAHLVANGADVIVLGCTELPLLIAQDDKFAVAGKRVPVLDPTEILARRCVA 205 ++ + HL GAD++V G TEL L+ + + + + +LD I A + Sbjct: 175 AALEQVAQVCRHLQEQGADLLVPGFTELSLVAQRLQR-----RGIGLLDSNAIYAEHALH 229 Query: 206 LASP 209 +SP Sbjct: 230 YSSP 233