BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0036.p         (47 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004152507.1| threonine dehydratase [Variovorax paradoxus ...    86   2e-15
ref|YP_002942078.1| threonine dehydratase [Variovorax paradoxus ...    84   6e-15
ref|YP_980357.1| threonine dehydratase [Polaromonas naphthaleniv...    84   7e-15
ref|YP_003773490.1| threonine dehydratase [Herbaspirillum serope...    82   2e-14
ref|YP_004617211.1| threonine dehydratase [Ramlibacter tataouine...    74   6e-12

>ref|YP_004152507.1| threonine dehydratase [Variovorax paradoxus EPS]
 gb|ADU34396.1| threonine dehydratase [Variovorax paradoxus EPS]
          Length = 402

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 43/47 (91%)

Query: 1   VHHQRAFTMLAAQNVDIELVLQTRGREHLALVLNALRQAGFEAEEQH 47
           VHHQRAFTMLAAQNVDIELVLQTRGR HLA VL AL+ AGFEAEEQH
Sbjct: 356 VHHQRAFTMLAAQNVDIELVLQTRGRAHLASVLTALKDAGFEAEEQH 402


>ref|YP_002942078.1| threonine dehydratase [Variovorax paradoxus S110]
 gb|ACS16812.1| threonine dehydratase [Variovorax paradoxus S110]
          Length = 409

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 42/47 (89%)

Query: 1   VHHQRAFTMLAAQNVDIELVLQTRGREHLALVLNALRQAGFEAEEQH 47
           VHHQRAFTMLAAQNVDIELVLQTRGR HLA VL AL  AGFEAEEQH
Sbjct: 363 VHHQRAFTMLAAQNVDIELVLQTRGRAHLASVLGALHDAGFEAEEQH 409


>ref|YP_980357.1| threonine dehydratase [Polaromonas naphthalenivorans CJ2]
 gb|ABM35436.1| L-threonine ammonia-lyase [Polaromonas naphthalenivorans CJ2]
          Length = 400

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/47 (87%), Positives = 43/47 (91%)

Query: 1   VHHQRAFTMLAAQNVDIELVLQTRGREHLALVLNALRQAGFEAEEQH 47
           VHHQRAFTMLAAQNV+IELVLQTRGR H+A VL ALR AGFEAEEQH
Sbjct: 354 VHHQRAFTMLAAQNVEIELVLQTRGRPHIAQVLQALRTAGFEAEEQH 400


>ref|YP_003773490.1| threonine dehydratase [Herbaspirillum seropedicae SmR1]
 gb|ADJ61582.1| threonine dehydratase protein [Herbaspirillum seropedicae SmR1]
          Length = 401

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/47 (87%), Positives = 42/47 (89%)

Query: 1   VHHQRAFTMLAAQNVDIELVLQTRGREHLALVLNALRQAGFEAEEQH 47
           VHHQRAFT+LAAQNVDIELVLQTRGR HLA VL ALR AGFEAEE H
Sbjct: 355 VHHQRAFTLLAAQNVDIELVLQTRGRPHLAQVLQALRAAGFEAEELH 401


>ref|YP_004617211.1| threonine dehydratase [Ramlibacter tataouinensis TTB310]
 gb|AEG91192.1| Candidate Threonine dehydratase catabolic (Threonine deaminase)
           [Ramlibacter tataouinensis TTB310]
          Length = 402

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 41/46 (89%)

Query: 1   VHHQRAFTMLAAQNVDIELVLQTRGREHLALVLNALRQAGFEAEEQ 46
           VHHQRAFTMLAAQNV+IELVLQTRG +H+  VL ALR+AGF+AE Q
Sbjct: 357 VHHQRAFTMLAAQNVEIELVLQTRGPDHIQAVLEALRRAGFQAERQ 402