BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0017.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08780964.1| Integrase catalytic region [Methylobacter tun... 427 e-117 ref|ZP_08486812.1| Integrase catalytic region [Methylomicrobium ... 394 e-107 ref|YP_004510969.1| integrase catalytic subunit [Methylomonas me... 373 e-101 ref|YP_003905317.1| Integrase catalytic region [Burkholderia sp.... 279 5e-73 ref|ZP_01621305.1| putative transposase [Lyngbya sp. PCC 8106] >... 162 8e-38 >ref|ZP_08780964.1| Integrase catalytic region [Methylobacter tundripaludum SV96] gb|EGW23139.1| Integrase catalytic region [Methylobacter tundripaludum SV96] Length = 667 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/352 (59%), Positives = 267/352 (75%), Gaps = 3/352 (0%) Query: 1 MPGFILQKNTAFEWAGSLCRIDRLQPNGEVLIEYVNEGHLTIVSKKQLLVEYSEGRIVAK 60 M GF L KN F+W G+ RIDR+QPNGE+L+E +++GHL+IVS++ LLVEY EG+I AK Sbjct: 1 MAGFALHKNMVFDWNGAEYRIDRIQPNGELLLERISDGHLSIVSRELLLVEYREGKISAK 60 Query: 61 NVR--SDEILERHIFSRPLDELPPEILNAATRRLHYVKAILEHGSPVFTREYLQPLIELA 118 S++ L FSRPL+EL I A RR HY+ ILEHG PVFT +YL+PLIELA Sbjct: 61 TAEPYSNKSLV-PTFSRPLNELSEGIRKAVNRRKHYLDIILEHGVPVFTPDYLRPLIELA 119 Query: 119 AKQIDDENLPSVTSIYRWCTKYKNGRDIRALIPRFDRRGSRKLKQADTVLQLALASVEEA 178 A +I+D N P V ++YRW ++K D RA+IPR D RG +KL+Q D +LQL ++EEA Sbjct: 120 AAKIEDINPPGVITVYRWYRRFKLSSDPRAIIPRTDLRGPKKLRQNDYILQLVAEALEEA 179 Query: 179 FAASPKATIPNIYTRLLGKIESENRLLSMSAHLKSPCLRTLYRMFDRLEAYDRVCFRDGK 238 F ASP+AT N+YTRLLGKI+ EN+ + +K P LRTLYR+ R EAY+ V ++GK Sbjct: 180 FKASPQATCRNVYTRLLGKIKIENQRTLGTEPIKPPSLRTLYRLIARAEAYETVVLKEGK 239 Query: 239 LAADKKFRLVKSGVVTTQILERVEIDHTPLDLFLVDERTWLPLGRPTLTVIIDHYSRMLL 298 AAD++FR+ K GV T++ILERVEIDHTPLDLFL+DERTWLPLGRPTLT++IDHYSRMLL Sbjct: 240 AAADRRFRIGKVGVKTSRILERVEIDHTPLDLFLIDERTWLPLGRPTLTIVIDHYSRMLL 299 Query: 299 GFYLSYGSPSAQAVMGALRHAILPKCPAKMVLPHLNVQHAWPCYGRPDVIVV 350 G+YLS+ SPS AVMG+LRHAILPK A V+P+L ++ WPCYGRP+V+VV Sbjct: 300 GYYLSFDSPSTAAVMGSLRHAILPKNSAAAVMPNLKTENTWPCYGRPEVMVV 351 >ref|ZP_08486812.1| Integrase catalytic region [Methylomicrobium album BG8] gb|EGL02269.1| Integrase catalytic region [Methylomicrobium album BG8] Length = 666 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/350 (54%), Positives = 250/350 (71%) Query: 1 MPGFILQKNTAFEWAGSLCRIDRLQPNGEVLIEYVNEGHLTIVSKKQLLVEYSEGRIVAK 60 M GF L KNT F+W G+ RI RLQPNGE+LIE V +G L+IV+++ +L EY G + AK Sbjct: 1 MAGFALHKNTVFDWNGAEYRIARLQPNGELLIERVGDGSLSIVTRETILSEYGVGNVSAK 60 Query: 61 NVRSDEILERHIFSRPLDELPPEILNAATRRLHYVKAILEHGSPVFTREYLQPLIELAAK 120 + +FSRPLDEL + A RR Y++ IL G+PVFT YL+PLIE AA Sbjct: 61 PAQLTIRDLAPLFSRPLDELSESVRCEALRRRRYIEHILGQGAPVFTATYLKPLIEQAAA 120 Query: 121 QIDDENLPSVTSIYRWCTKYKNGRDIRALIPRFDRRGSRKLKQADTVLQLALASVEEAFA 180 ++ D+ PS TS+YRW +Y++ D RA+IPR D RG +K +Q D +LQL +V+EAF Sbjct: 121 EMGDDTPPSATSVYRWFRRYRSTNDTRAMIPRTDLRGLKKSRQNDRILQLVSEAVDEAFK 180 Query: 181 ASPKATIPNIYTRLLGKIESENRLLSMSAHLKSPCLRTLYRMFDRLEAYDRVCFRDGKLA 240 SP+A++P IYT+ L K+E+EN S + +K +RTLYR+ R+ AY+ ++ K Sbjct: 181 VSPQASVPTIYTKFLAKLEAENARASRNEQIKPFTMRTLYRLLARVGAYEIALLKESKAV 240 Query: 241 ADKKFRLVKSGVVTTQILERVEIDHTPLDLFLVDERTWLPLGRPTLTVIIDHYSRMLLGF 300 AD +FR+ K+G T++ILERVEIDHTPLDLFL+DE+TWLPLGRPTLTVIIDHYSR+LLG+ Sbjct: 241 ADNRFRIGKAGAKTSRILERVEIDHTPLDLFLIDEKTWLPLGRPTLTVIIDHYSRILLGY 300 Query: 301 YLSYGSPSAQAVMGALRHAILPKCPAKMVLPHLNVQHAWPCYGRPDVIVV 350 YLS+ SPS AVMGALRHAILPK PA V+P L ++ WPCYG P+V+VV Sbjct: 301 YLSFDSPSTAAVMGALRHAILPKNPATAVMPSLKTENRWPCYGLPEVLVV 350 >ref|YP_004510969.1| integrase catalytic subunit [Methylomonas methanica MC09] gb|AEF98469.1| Integrase catalytic region [Methylomonas methanica MC09] Length = 662 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/353 (52%), Positives = 254/353 (71%), Gaps = 5/353 (1%) Query: 1 MPGFILQKNTAFEWAGSLCRIDRLQPNGEVLIEYVNEGHLTIVSKKQLLVEYSEGRIVAK 60 M GF L+KN F+W+G+ RIDR+QPNG+ L+E ++GHL + S+++LL +Y +G+I AK Sbjct: 1 MTGFALRKNMVFDWSGAEYRIDRIQPNGDFLLECPSDGHLLVTSREKLLDDYRDGKISAK 60 Query: 61 NVRSDEILERHI---FSRPLDELPPEILNAATRRLHYVKAILEHGSPVFTREYLQPLIEL 117 +D L + + +SRPL++L + RR +Y++ +L +G VFT YL+PLI L Sbjct: 61 T--ADSSLHKSLVPTYSRPLEDLAEPVQQKTVRRKYYLEKLLAYGDLVFTVAYLEPLITL 118 Query: 118 AAKQIDDENLPSVTSIYRWCTKYKNGRDIRALIPRFDRRGSRKLKQADTVLQLALASVEE 177 AA +I+D PS++SIYRW +K D RALIPR DR G R+L+Q+D +LQLA + E Sbjct: 119 AALEINDAKPPSISSIYRWYGCFKQHSDARALIPRTDRCGPRRLRQSDRILQLAEDVMAE 178 Query: 178 AFAASPKATIPNIYTRLLGKIESENRLLSMSAHLKSPCLRTLYRMFDRLEAYDRVCFRDG 237 F SP+A+ +Y RL KIE EN+ + LK+P RT+YRM R +AYD ++G Sbjct: 179 VFNRSPQASGYTLYERLCDKIELENQRQLGAKPLKAPSSRTVYRMLKRTDAYDLTVLKEG 238 Query: 238 KLAADKKFRLVKSGVVTTQILERVEIDHTPLDLFLVDERTWLPLGRPTLTVIIDHYSRML 297 K AD++FR+ K+GV T++ILERVEIDHTPLDLFL+D+RTWLPLGRPTLTV+IDHYSRML Sbjct: 239 KSVADRRFRISKAGVKTSRILERVEIDHTPLDLFLIDQRTWLPLGRPTLTVVIDHYSRML 298 Query: 298 LGFYLSYGSPSAQAVMGALRHAILPKCPAKMVLPHLNVQHAWPCYGRPDVIVV 350 LG+YLS+ SPS AVMGALRHAILPK A+ V+ +L + ++WPCYG P+ +V+ Sbjct: 299 LGYYLSFESPSTAAVMGALRHAILPKKLAEPVITNLKIVNSWPCYGIPEKMVL 351 >ref|YP_003905317.1| Integrase catalytic region [Burkholderia sp. CCGE1003] gb|ADN56026.1| Integrase catalytic region [Burkholderia sp. CCGE1003] Length = 653 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 150/352 (42%), Positives = 216/352 (61%), Gaps = 2/352 (0%) Query: 1 MPGFILQKNTAFEWAGSLCRIDRLQPNGEVLIEYVNEGHLTIVSKKQLLVEYSEGRIVAK 60 M GF L++ AFE+ G +I R+ +G V +E L+ +++QLL Y +GRIV Sbjct: 1 MSGFRLRRGMAFEFDGIAVQIHRIWDDGTVTLEQRGTMKLSQTTERQLLDAYRDGRIVVS 60 Query: 61 N-VRSDEILERHIFS-RPLDELPPEILNAATRRLHYVKAILEHGSPVFTREYLQPLIELA 118 + +R + +R + + RP + E+ A RR Y+ A+ G PVFT L+P I A Sbjct: 61 DPLRHERSSDRLMAAGRPFSDFSHELQQEAIRRKSYLDALSLSGPPVFTPSILRPAIRCA 120 Query: 119 AKQIDDENLPSVTSIYRWCTKYKNGRDIRALIPRFDRRGSRKLKQADTVLQLALASVEEA 178 A DE PS +SIYRW ++ +DIR+L+PR RG R + + +++L + S+ E Sbjct: 121 ALSRGDEKTPSPSSIYRWWKAFERTQDIRSLLPRNSARGPRGPRTSAAIIELYIESLTET 180 Query: 179 FAASPKATIPNIYTRLLGKIESENRLLSMSAHLKSPCLRTLYRMFDRLEAYDRVCFRDGK 238 P+ ++ + RL K+E EN + S + L P +RTL R+F RL YD DG Sbjct: 181 SKLLPRLSLQDAQIRLKQKLERENCMRSSADRLSMPSMRTLQRLFRRLSEYDVAVLCDGV 240 Query: 239 LAADKKFRLVKSGVVTTQILERVEIDHTPLDLFLVDERTWLPLGRPTLTVIIDHYSRMLL 298 AA++ +R+ KSGV T+ILERVE+DHTP DLF++D +T LP GRPTLT++ID YSRM+L Sbjct: 241 DAANRTYRITKSGVPVTRILERVEVDHTPQDLFVIDGKTGLPCGRPTLTILIDVYSRMVL 300 Query: 299 GFYLSYGSPSAQAVMGALRHAILPKCPAKMVLPHLNVQHAWPCYGRPDVIVV 350 G+Y+S+ S +VM ALRHAILPK P V+P + V H+W CYGRP+V+V Sbjct: 301 GYYVSFNDTSTLSVMRALRHAILPKTPTPAVVPGIVVLHSWVCYGRPEVLVT 352 >ref|ZP_01621305.1| putative transposase [Lyngbya sp. PCC 8106] gb|EAW36766.1| putative transposase [Lyngbya sp. PCC 8106] Length = 791 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 151/283 (53%), Gaps = 7/283 (2%) Query: 77 LDELPPEILNAATRRLHYVKAILEHGSPVFTREYLQPLIELAAKQIDDENLPSVTSIYRW 136 E+ P + A++RL YV+ LE T E L+P+IE +++I D + P S+YRW Sbjct: 78 FSEIDPRLKQEASKRLKYVERFLEKDIQNLTPETLKPIIEEVSQEISDNSPPGWYSLYRW 137 Query: 137 CTKYKNG-RDIRALIPRFDRRGSRKLKQADTVLQLALASVEEAFAASPKATIPNIYTRLL 195 +Y+ G DIR+L+ + +G+RK + D + Q+ +E + + K TI + + + Sbjct: 138 IKRYEEGGYDIRSLVSKTQAKGNRKSRLPDEIYQIINEVKDELYLSKTKPTIADAVSEIR 197 Query: 196 GKIESENRLLSMSAHLKS---PCLRTLYRMFDRLEAYDRVCFRDGKLAADKKFRLV-KSG 251 +I EN S LK P T+YR++ +++ Y+ R GK AD+ + + K Sbjct: 198 YRITQENYRRSQIGTLKPLKIPHESTIYRIYSQIDPYEEAVGRYGKRTADRMYDMSGKEP 257 Query: 252 VVTTQILERVEIDHTPLDLFLVDERTWLPLGRPTLTVIIDHYSRMLLGFYLSYGSPSAQA 311 + + L+ VEIDHTPL ++VD T LP+GRP L +ID Y+++ G+ LS+ S + Sbjct: 258 IRPQRPLQIVEIDHTPLPFYVVDSETRLPIGRPNLVTVIDKYTQIPCGYDLSFDPESGLS 317 Query: 312 VMGALRHAILPKCPAKMVLPHLNVQHAWPCYGRPDVIVVGMXG 354 VM L HAI PK P NV + W YG ++I V G Sbjct: 318 VMRCLNHAIRPKNYVSEQYP--NVSNTWDTYGLMEMIRVDNAG 358