BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0014.p (835 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004750665.1| DNA gyrase subunit B [Collimonas fungivorans... 1500 0.0 ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. ... 1468 0.0 ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seroped... 1447 0.0 emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATP... 1444 0.0 ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenico... 1436 0.0 >ref|YP_004750665.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] gb|AEK59842.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] Length = 826 Score = 1500 bits (3883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 733/831 (88%), Positives = 774/831 (93%), Gaps = 6/831 (0%) Query: 5 SQAPADNTVQPQQNQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 64 S AP DNT QPQ N YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID Sbjct: 2 SSAP-DNTNQPQPNAYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 65 ESLAGHCTEIHVTIHSDNSISVIDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 124 ESLAGHCTEIHVTIH+DNSIS+ DNGRG+PTG+K DDKH+PKRSAAEIVMTELHAGGKFD Sbjct: 61 ESLAGHCTEIHVTIHADNSISITDNGRGVPTGIKFDDKHDPKRSAAEIVMTELHAGGKFD 120 Query: 125 QNSYKVSGGLHGVGVSCVNGLSKLLRLTIRRDGKAYAMEFVRGIPQDRLIEVIDGVQVSP 184 QNSYKVSGGLHGVGVSCVNGLSKLL+LTIRRDGK + MEFVRG+PQ+R E IDG+ VSP Sbjct: 121 QNSYKVSGGLHGVGVSCVNGLSKLLKLTIRRDGKVHYMEFVRGVPQNRETETIDGMLVSP 180 Query: 185 IRVTGDTDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 244 I+V GDTDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE Sbjct: 181 IKVIGDTDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 Query: 245 NFAFEGGTRGFVEYINKNKSILNPTIFQATGERMSDQNTNISVDVSMQWNDAYNEQVLCF 304 NFAFEGGTRGFVEYINK K++L+PTIFQATGE+ +SVDVSMQWNDAYNEQVLCF Sbjct: 241 NFAFEGGTRGFVEYINKAKTVLHPTIFQATGEK-----DGVSVDVSMQWNDAYNEQVLCF 295 Query: 305 TNNIPQRDGGTHLTGLRAAMTRVINKYIEEHEFAKKAKVEVSGDDMREGLTCVLSVKVPE 364 TNNIPQRDGGTHLTGLRAAMTR++NKYIEEH+FAKKAKVE SGDDMREGLTCVLSVKVPE Sbjct: 296 TNNIPQRDGGTHLTGLRAAMTRILNKYIEEHDFAKKAKVETSGDDMREGLTCVLSVKVPE 355 Query: 365 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLQERPNDAKIICGKIVEAARAREAARKAR 424 PKFSSQTKDKLVSSEVR PVEEIVAKTL D+LQERPNDAKIICGKIVEAARAR+AARKAR Sbjct: 356 PKFSSQTKDKLVSSEVRLPVEEIVAKTLNDYLQERPNDAKIICGKIVEAARARDAARKAR 415 Query: 425 ELTRRKGVMDGLGLSAKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 484 ELTRRKGVMDGLGLS+KLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK Sbjct: 416 ELTRRKGVMDGLGLSSKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 475 Query: 485 VLNVEKARFEKMLSSEQITTLIATLGTSIGPDEFNADKLRYHRIIIMTDADVDGAHIRTL 544 VLNVEKARFEKMLSSEQITTLIATLGTSIG DEFNADKLRYHRIIIMTDADVDGAHIRTL Sbjct: 476 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNADKLRYHRIIIMTDADVDGAHIRTL 535 Query: 545 LLTLFYRQMPQLVERGHIYIAQPPLYKVKAGKDERYLKDDVEEAQYMMQIALNDAELVPS 604 LLTLFYRQMPQLVERGHIYIAQPPLYKVK GKDERYLKDD EE YMMQ+ALNDA LVPS Sbjct: 536 LLTLFYRQMPQLVERGHIYIAQPPLYKVKHGKDERYLKDDAEEVSYMMQVALNDAALVPS 595 Query: 605 EGAAPISGAPLTELVRQYNTANAIIMRLTRMIDAGALSAIMTGVTLQLNTAAEAEQSAAA 664 EGA PISG L ELVRQYN AN+II RLTR +D AL++IMTGVTL+L+T A+AE SA A Sbjct: 596 EGALPISGPALAELVRQYNMANSIITRLTRAVDGAALTSIMTGVTLKLDTLADAEASAQA 655 Query: 665 LKAAINEPGVDVVVRSDELTDKHILRINRLYHGNIKATAIDADFVNGPDYQVLENAAATF 724 L+A+INEP V VVV+SDEL+DKH LRI R YHGNIK +AID+DFV PDY VL NAA TF Sbjct: 656 LQASINEPSVQVVVKSDELSDKHALRIQRRYHGNIKVSAIDSDFVASPDYTVLVNAAETF 715 Query: 725 RGLIGRGALIRRGSGEKIKESAINDFHQAVAWLREEAERGVSKQRYKGLGEMNPGQLWET 784 +GLIG GALIRRG+GEK+KESAI DFHQA+AWLR+EAERGVSKQRYKGLGEMNP QLWET Sbjct: 716 KGLIGPGALIRRGAGEKVKESAIIDFHQAMAWLRDEAERGVSKQRYKGLGEMNPSQLWET 775 Query: 785 TMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQAGNIDV 835 TMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQAGNIDV Sbjct: 776 TMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQAGNIDV 826 >ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] gb|ABR88535.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] Length = 832 Score = 1468 bits (3801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 720/831 (86%), Positives = 768/831 (92%) Query: 5 SQAPADNTVQPQQNQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 64 S P DN QPQ QYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHH VFEVLDNSID Sbjct: 2 SAIPNDNAPQPQSAQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSID 61 Query: 65 ESLAGHCTEIHVTIHSDNSISVIDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 124 ESLAGHCTEIHVTIHSDNSIS+ DNGRGIPTG+K DDKHEPKRSAAEIVMTELHAGGKFD Sbjct: 62 ESLAGHCTEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKFD 121 Query: 125 QNSYKVSGGLHGVGVSCVNGLSKLLRLTIRRDGKAYAMEFVRGIPQDRLIEVIDGVQVSP 184 QNSYKVSGGLHGVGVSCVNGLSKLL+LTIRRDGK + MEFVRG+PQ+R +E IDG+ VSP Sbjct: 122 QNSYKVSGGLHGVGVSCVNGLSKLLKLTIRRDGKKHEMEFVRGVPQNREVETIDGMVVSP 181 Query: 185 IRVTGDTDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 244 I+V GDTDKRGTEVHFWADEEIFT+VEFHY+ILAKRIRELSFLNNGVHIKL+DQRTGKEE Sbjct: 182 IKVVGDTDKRGTEVHFWADEEIFTNVEFHYDILAKRIRELSFLNNGVHIKLSDQRTGKEE 241 Query: 245 NFAFEGGTRGFVEYINKNKSILNPTIFQATGERMSDQNTNISVDVSMQWNDAYNEQVLCF 304 +FAFEGGTRGFVEYINK KS+L+PTIFQATGER+SDQ TNI+VDVSMQWNDAYNEQVLCF Sbjct: 242 DFAFEGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNITVDVSMQWNDAYNEQVLCF 301 Query: 305 TNNIPQRDGGTHLTGLRAAMTRVINKYIEEHEFAKKAKVEVSGDDMREGLTCVLSVKVPE 364 TNNIPQRDGGTHLTGLRAAMTRVINKYI+EHEFAKKAKVE+SGDDMREGLTCVLSVKVPE Sbjct: 302 TNNIPQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEISGDDMREGLTCVLSVKVPE 361 Query: 365 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLQERPNDAKIICGKIVEAARAREAARKAR 424 PKFSSQTKDKLVSSEVRGPVEEIVAKTL D+LQE+PNDAKIICGKIVEAARAREAARKAR Sbjct: 362 PKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAARKAR 421 Query: 425 ELTRRKGVMDGLGLSAKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 484 +LTRRKGVMDGLGLSAKLADCQEKDPALCELY+VEGDSAGGSAKQGRDRKFQAILPLRGK Sbjct: 422 DLTRRKGVMDGLGLSAKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAILPLRGK 481 Query: 485 VLNVEKARFEKMLSSEQITTLIATLGTSIGPDEFNADKLRYHRIIIMTDADVDGAHIRTL 544 VLNVEKARFEKML+SEQITTLIATLGTSIG DEFN +KLRYHRIIIMTDADVDGAHIRTL Sbjct: 482 VLNVEKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDADVDGAHIRTL 541 Query: 545 LLTLFYRQMPQLVERGHIYIAQPPLYKVKAGKDERYLKDDVEEAQYMMQIALNDAELVPS 604 LLTL YRQMPQLVERGH+YIAQPPLYKVK GKDERYLKDDVEEA YMMQIALNDA L+PS Sbjct: 542 LLTLLYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVYMMQIALNDAALIPS 601 Query: 605 EGAAPISGAPLTELVRQYNTANAIIMRLTRMIDAGALSAIMTGVTLQLNTAAEAEQSAAA 664 EGA PI+G L ELVRQYN ANAII RLTR +D AL+AIMTGVTL L++ A+ SA Sbjct: 602 EGAQPIAGDALAELVRQYNMANAIINRLTRAVDGAALTAIMTGVTLDLSSVEAAQASAQR 661 Query: 665 LKAAINEPGVDVVVRSDELTDKHILRINRLYHGNIKATAIDADFVNGPDYQVLENAAATF 724 L+ INEP V V V+SDEL+ KH LRINR+YHGN+KA++ID+DFV GPDY VL AAATF Sbjct: 662 LEQGINEPAVTVTVKSDELSGKHTLRINRMYHGNVKASSIDSDFVTGPDYTVLAAAAATF 721 Query: 725 RGLIGRGALIRRGSGEKIKESAINDFHQAVAWLREEAERGVSKQRYKGLGEMNPGQLWET 784 +GLIG GAL++RG+GEK K SAI+DFHQA+ WLR EAER V KQRYKGLGEMNP QLWET Sbjct: 722 KGLIGPGALVQRGAGEKAKVSAISDFHQAMNWLRSEAERNVGKQRYKGLGEMNPEQLWET 781 Query: 785 TMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQAGNIDV 835 TMDP VRRLLKVQIEDAIAADQIF TLMGDDVEPRRAFIELNAL AGNID+ Sbjct: 782 TMDPAVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALSAGNIDI 832 >ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seropedicae SmR1] gb|ADJ61533.1| DNA gyrase subunit B protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 1447 bits (3745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 716/832 (86%), Positives = 763/832 (91%), Gaps = 2/832 (0%) Query: 5 SQAPADNTVQPQQNQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 64 S +PADNT QQ+ YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID Sbjct: 2 STSPADNTNSAQQS-YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 65 ESLAGHCTEIHVTIHSDNSISVIDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 124 E+LAG+C+EIHVTIH+DNSIS+ DNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD Sbjct: 61 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 120 Query: 125 QNSYKVSGGLHGVGVSCVNGLSKLLRLTIRRDGKAYAMEFVRGIPQDRLIEVIDGVQVSP 184 QNSYKVSGGLHGVGVSCVN LSK L+LTIRRDGK +AMEF +GI Q+R +E++DGVQVSP Sbjct: 121 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 180 Query: 185 IRVTGDTDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 244 I+V G++DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE Sbjct: 181 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 Query: 245 NFAFEGGTRGFVEYINKNKSILNPTIFQATGERMSDQNTNISVDVSMQWNDAYNEQVLCF 304 +FAFEGGTRGFVEYINKNKSILNPTIFQATGE+ SDQ T I+VDVSMQWNDA+NEQVLCF Sbjct: 241 DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCF 300 Query: 305 TNNIPQRDGGTHLTGLRAAMTRVINKYIEEHEFAKKAKVEVSGDDMREGLTCVLSVKVPE 364 TNNIPQRDGGTHLTGLRAAMTRVINKYIEE++ AKKAKVE+SGDDMREGLTCVLSVKVPE Sbjct: 301 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE 360 Query: 365 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLQERPNDAKIICGKIVEAARAREAARKAR 424 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFL E+PNDAKIICGKIVEAARAREAARKAR Sbjct: 361 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR 420 Query: 425 ELTRRKGVMDGLGLSAKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 484 ELTRRKGVMDGLGLS+KLADCQE+DPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK Sbjct: 421 ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 480 Query: 485 VLNVEKARFEKMLSSEQITTLIATLGTSIGPDEFNADKLRYHRIIIMTDADVDGAHIRTL 544 VLNVEKARFEKMLSSEQITTLIATLGTSIG DEFN DKLRYHRIIIMTDADVDGAHIRTL Sbjct: 481 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL 540 Query: 545 LLTLFYRQMPQLVERGHIYIAQPPLYKVKAGKDERYLKDDVEEAQYMMQIALNDAELVPS 604 LLTLFYRQMP LVERGHIYIAQPPLYKVKAGKDERYLKDD EEAQYMMQIALNDAE+ P+ Sbjct: 541 LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPA 600 Query: 605 EGAAPISGAPLTELVRQYNTANAIIMRLTRMIDAGALSAIMT-GVTLQLNTAAEAEQSAA 663 E A I+G L EL RQYNTANAIIMRLTR ID AL AIMT GV L+++ +A +A Sbjct: 601 EDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAE 660 Query: 664 ALKAAINEPGVDVVVRSDELTDKHILRINRLYHGNIKATAIDADFVNGPDYQVLENAAAT 723 LK AIN+ +DV R DE ++K L I+R HGNIKAT IDADFV+GPDYQVL AA T Sbjct: 661 ELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAET 720 Query: 724 FRGLIGRGALIRRGSGEKIKESAINDFHQAVAWLREEAERGVSKQRYKGLGEMNPGQLWE 783 F+GLI +GA + RG GEK KES I DF QA+AWLR+EAERGV+KQRYKGLGEMNP QLWE Sbjct: 721 FKGLIRKGATVARGQGEKRKESVITDFRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWE 780 Query: 784 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQAGNIDV 835 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIE NALQAGNIDV Sbjct: 781 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 >emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity, protein [Herbaspirillum seropedicae] Length = 832 Score = 1444 bits (3739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 715/832 (85%), Positives = 762/832 (91%), Gaps = 2/832 (0%) Query: 5 SQAPADNTVQPQQNQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 64 S +PADNT QQ+ YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID Sbjct: 2 STSPADNTNSAQQS-YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 65 ESLAGHCTEIHVTIHSDNSISVIDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 124 E+LAG+C+EIHVTIH+DNSIS+ DNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD Sbjct: 61 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 120 Query: 125 QNSYKVSGGLHGVGVSCVNGLSKLLRLTIRRDGKAYAMEFVRGIPQDRLIEVIDGVQVSP 184 QNSYKVSGGLHGVGVSCVN LSK L+LTIRRDGK +AMEF +GI Q+R +E++DGVQVSP Sbjct: 121 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 180 Query: 185 IRVTGDTDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 244 I+V G++DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE Sbjct: 181 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 Query: 245 NFAFEGGTRGFVEYINKNKSILNPTIFQATGERMSDQNTNISVDVSMQWNDAYNEQVLCF 304 +FAFEGGTRGFVEYINKNKSILNPTIFQATGE+ SDQ T I+VDVSMQWNDA+NEQVLCF Sbjct: 241 DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCF 300 Query: 305 TNNIPQRDGGTHLTGLRAAMTRVINKYIEEHEFAKKAKVEVSGDDMREGLTCVLSVKVPE 364 TNNIPQRDGGTHLTGLRAAMTRVINKYIEE++ AKKAKVE+SGDDMREGLTCVLSVKVPE Sbjct: 301 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE 360 Query: 365 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLQERPNDAKIICGKIVEAARAREAARKAR 424 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFL E+PNDAKIICGKIVEAARAREAARKAR Sbjct: 361 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR 420 Query: 425 ELTRRKGVMDGLGLSAKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 484 ELTRRKGVMDGLGLS+KLADCQE+DPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK Sbjct: 421 ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 480 Query: 485 VLNVEKARFEKMLSSEQITTLIATLGTSIGPDEFNADKLRYHRIIIMTDADVDGAHIRTL 544 VLNVEKARFEKMLSSEQITTLIATLGTSIG DEFN DKLRYHRIIIMTDADVDGAHIRTL Sbjct: 481 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL 540 Query: 545 LLTLFYRQMPQLVERGHIYIAQPPLYKVKAGKDERYLKDDVEEAQYMMQIALNDAELVPS 604 LLTLFYRQMP LVERGHIYIAQPPLYKVKAGKDERYLKDD EEAQYMMQIALNDAE+ P+ Sbjct: 541 LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPA 600 Query: 605 EGAAPISGAPLTELVRQYNTANAIIMRLTRMIDAGALSAIMT-GVTLQLNTAAEAEQSAA 663 E A I+G L EL RQYNTANAIIMRLTR ID AL AIMT GV L+++ +A +A Sbjct: 601 EDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAE 660 Query: 664 ALKAAINEPGVDVVVRSDELTDKHILRINRLYHGNIKATAIDADFVNGPDYQVLENAAAT 723 LK AIN+ +DV R DE ++K L I+R HGNIKAT IDADFV+GPDYQVL AA T Sbjct: 661 ELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAET 720 Query: 724 FRGLIGRGALIRRGSGEKIKESAINDFHQAVAWLREEAERGVSKQRYKGLGEMNPGQLWE 783 F+GLI +GA + RG EK KES I DF QA+AWLR+EAERGV+KQRYKGLGEMNP QLWE Sbjct: 721 FKGLIRKGATVARGQCEKRKESVITDFRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWE 780 Query: 784 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQAGNIDV 835 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIE NALQAGNIDV Sbjct: 781 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 >ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] emb|CAL60244.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] Length = 835 Score = 1436 bits (3716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 711/834 (85%), Positives = 761/834 (91%), Gaps = 3/834 (0%) Query: 5 SQAPADNTVQPQQN---QYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDN 61 S P DNT Q YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHH VFEVLDN Sbjct: 2 SAIPNDNTPQSPSTLSAAYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDN 61 Query: 62 SIDESLAGHCTEIHVTIHSDNSISVIDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGG 121 SIDESLAGHCTEIHVTIHSDNSIS+ DNGRGIPTG+K DDKHEPKRSAAEIVMTELHAGG Sbjct: 62 SIDESLAGHCTEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGG 121 Query: 122 KFDQNSYKVSGGLHGVGVSCVNGLSKLLRLTIRRDGKAYAMEFVRGIPQDRLIEVIDGVQ 181 KFDQNSYKVSGGLHGVGVSCVNGLS+LL+LTIRRDGK + MEFVRG+PQ+R IE IDG Sbjct: 122 KFDQNSYKVSGGLHGVGVSCVNGLSRLLKLTIRRDGKTHYMEFVRGVPQNREIETIDGHI 181 Query: 182 VSPIRVTGDTDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTG 241 VSPI+V G+TDKRGTEVHFWADEEIF +VEFHY+ILAKRIRELSFLNNGV I+L+DQRTG Sbjct: 182 VSPIKVIGETDKRGTEVHFWADEEIFNNVEFHYDILAKRIRELSFLNNGVRIRLSDQRTG 241 Query: 242 KEENFAFEGGTRGFVEYINKNKSILNPTIFQATGERMSDQNTNISVDVSMQWNDAYNEQV 301 KEE FAFEGGTRGFVEYINK KS+L+PTIFQATGER+SDQ TNI+VDVSMQWNDAYNEQV Sbjct: 242 KEELFAFEGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNIAVDVSMQWNDAYNEQV 301 Query: 302 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEEHEFAKKAKVEVSGDDMREGLTCVLSVK 361 +CFTNNIPQRDGGTHLTGLRAAMTRVINKYI+EHEFAKKAKVEV+GDDMREGLTCVLSVK Sbjct: 302 ICFTNNIPQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEVTGDDMREGLTCVLSVK 361 Query: 362 VPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLQERPNDAKIICGKIVEAARAREAAR 421 VPEPKFSSQTKDKLVSSEVRGPVEEIVAKTL D+LQE+PNDAKIICGKIVEAARAREAAR Sbjct: 362 VPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAAR 421 Query: 422 KARELTRRKGVMDGLGLSAKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPL 481 KAR+LTRRKGVMDGLGLS+KLADCQEKDPALCELY+VEGDSAGGSAKQGRDRKFQAILPL Sbjct: 422 KARDLTRRKGVMDGLGLSSKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAILPL 481 Query: 482 RGKVLNVEKARFEKMLSSEQITTLIATLGTSIGPDEFNADKLRYHRIIIMTDADVDGAHI 541 RGKVLNVEKARFEKML+SEQITTLIATLGTSIG DEFN +KLRYHRIIIMTDADVDGAHI Sbjct: 482 RGKVLNVEKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDADVDGAHI 541 Query: 542 RTLLLTLFYRQMPQLVERGHIYIAQPPLYKVKAGKDERYLKDDVEEAQYMMQIALNDAEL 601 RTLLLTL YRQMPQLVERGH+YIAQPPLYKVK GKDERYLKDDVEEA YMMQIALNDA L Sbjct: 542 RTLLLTLLYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVYMMQIALNDAAL 601 Query: 602 VPSEGAAPISGAPLTELVRQYNTANAIIMRLTRMIDAGALSAIMTGVTLQLNTAAEAEQS 661 VP+EGA PISG L ELVRQYNT+NAII RLTRM+D AL+AIMTGVTL L++ A S Sbjct: 602 VPAEGAEPISGDALAELVRQYNTSNAIINRLTRMVDGAALTAIMTGVTLDLSSQEAANAS 661 Query: 662 AAALKAAINEPGVDVVVRSDELTDKHILRINRLYHGNIKATAIDADFVNGPDYQVLENAA 721 A L+ I EP V+V+VR DEL +K LRI+R+YHGNIK +AIDA+FVNG DY+VL AA Sbjct: 662 AQRLQDGIGEPSVEVIVRHDELAEKFSLRIHRMYHGNIKVSAIDAEFVNGADYRVLAAAA 721 Query: 722 ATFRGLIGRGALIRRGSGEKIKESAINDFHQAVAWLREEAERGVSKQRYKGLGEMNPGQL 781 ATF+GLIG GA+++RG GEK+K INDFHQA+ WLR EAER V KQRYKGLGEMNP QL Sbjct: 722 ATFKGLIGTGAMVQRGVGEKVKSIGINDFHQAMNWLRSEAERNVGKQRYKGLGEMNPSQL 781 Query: 782 WETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQAGNIDV 835 WETTMDPTVRRLLKVQIEDAIAADQIF TLMGDDVEPRRAFIELNAL AGNID+ Sbjct: 782 WETTMDPTVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALSAGNIDI 835