BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0013.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773440.1| DNA polymerase III subunit beta [Herbaspiril... 681 0.0 ref|YP_004750664.1| DNA polymerase III subunit beta [Collimonas ... 675 0.0 ref|YP_001351692.1| DNA polymerase III subunit beta [Janthinobac... 671 0.0 ref|YP_001098371.1| DNA polymerase III subunit beta [Herminiimon... 662 0.0 ref|ZP_08273138.1| DNA polymerase III beta subunit [Oxalobactera... 644 0.0 >ref|YP_003773440.1| DNA polymerase III subunit beta [Herbaspirillum seropedicae SmR1] gb|ADJ61532.1| DNA polymerase III subunit beta protein [Herbaspirillum seropedicae SmR1] Length = 368 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/351 (93%), Positives = 345/351 (98%) Query: 1 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAEVGSGSEVTATTVAARKLL 60 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHA+VGSGSE TATTVAARKLL Sbjct: 18 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADVGSGSEATATTVAARKLL 77 Query: 61 DILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVTLPQKTL 120 DILRALPDSGEV+++LSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQV LPQKTL Sbjct: 78 DILRALPDSGEVSISLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVNLPQKTL 137 Query: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 180 KHLFNMVHF+MAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQV TE++FPRQEVII Sbjct: 138 KHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVETEEDFPRQEVII 197 Query: 181 PRKTIIELQRLLEENDDPVQLEIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 PRKTIIELQRLL+++D+ VQL+IANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKN+ Sbjct: 198 PRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNS 257 Query: 241 FTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDSV 300 FTI R+QLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGD+V Sbjct: 258 FTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDTV 317 Query: 301 DIGFNVTYLLDVLNNLKGDFVNIALGDANSSALITIPDNADFKYVVMPMRI 351 DIGFNV+YLLDVLNNLK D+VNIALGDANSSALITIPDNADFKYVVMPMRI Sbjct: 318 DIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFKYVVMPMRI 368 >ref|YP_004750664.1| DNA polymerase III subunit beta [Collimonas fungivorans Ter331] gb|AEK59841.1| DNA polymerase III beta subunit [Collimonas fungivorans Ter331] Length = 368 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/351 (92%), Positives = 344/351 (98%) Query: 1 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAEVGSGSEVTATTVAARKLL 60 VSGIVERRHTLPILANILIRK+GEKVSFLSTDIEVQITT+A+VGSGSEV ATTVAARKLL Sbjct: 18 VSGIVERRHTLPILANILIRKEGEKVSFLSTDIEVQITTNAKVGSGSEVAATTVAARKLL 77 Query: 61 DILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVTLPQKTL 120 DILRALPD+GEV++TLSNKR+TVQSGKSRFALQTLAAEEFPTVAQA+HYNA VTLPQKTL Sbjct: 78 DILRALPDTGEVSLTLSNKRMTVQSGKSRFALQTLAAEEFPTVAQADHYNATVTLPQKTL 137 Query: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 180 KHLFNMVHFSMAQQDIRYYLNGLLLV++GKNVIAVATDGHRLAFCQVATEQEF RQEVII Sbjct: 138 KHLFNMVHFSMAQQDIRYYLNGLLLVLDGKNVIAVATDGHRLAFCQVATEQEFARQEVII 197 Query: 181 PRKTIIELQRLLEENDDPVQLEIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 PRKTIIELQRLLEE D+PVQLEIANNQVKL+FADIELISKLVEGKFPDYTRVVPKGYKN+ Sbjct: 198 PRKTIIELQRLLEETDEPVQLEIANNQVKLSFADIELISKLVEGKFPDYTRVVPKGYKND 257 Query: 241 FTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDSV 300 FTI R+QLLRSLQRAAIMTSDKFKGVRWV+ PGSLKISSTNADQEEA+EELEIDYGGDSV Sbjct: 258 FTISRDQLLRSLQRAAIMTSDKFKGVRWVVTPGSLKISSTNADQEEAIEELEIDYGGDSV 317 Query: 301 DIGFNVTYLLDVLNNLKGDFVNIALGDANSSALITIPDNADFKYVVMPMRI 351 DIGFNVTYLLDVLNNLKGD VNIALGDANSSALIT+P+NADFKYVVMPMRI Sbjct: 318 DIGFNVTYLLDVLNNLKGDNVNIALGDANSSALITVPENADFKYVVMPMRI 368 >ref|YP_001351692.1| DNA polymerase III subunit beta [Janthinobacterium sp. Marseille] gb|ABR89081.1| DNA polymerase III beta subunit [Janthinobacterium sp. Marseille] Length = 368 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/351 (91%), Positives = 342/351 (97%) Query: 1 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAEVGSGSEVTATTVAARKLL 60 VSGIVERRHTLPILANILIRKDGE+VSFLSTDIEVQITTHA+VGSG++V +TTVAARKLL Sbjct: 18 VSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQVGSGNDVASTTVAARKLL 77 Query: 61 DILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVTLPQKTL 120 DILRALPDSG+V++TL+NKR+TVQSGKSRFALQTLAAEEFPTVAQAE YNA+VTLPQKTL Sbjct: 78 DILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTVAQAEQYNAKVTLPQKTL 137 Query: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 180 KHLFNMVHFSMAQQDIRYYLNGLLLVV+GKNVIAVATDGHRLAFCQVATEQEFPRQEVII Sbjct: 138 KHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 197 Query: 181 PRKTIIELQRLLEENDDPVQLEIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 PRKTIIELQRLLEEND PV LEIANNQVKLTF DIELISKLVEGKFPDYTRVVPKGYKNN Sbjct: 198 PRKTIIELQRLLEENDQPVDLEIANNQVKLTFGDIELISKLVEGKFPDYTRVVPKGYKNN 257 Query: 241 FTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDSV 300 FTIGR+ LLRSLQRAAIMTSDKFKGVR +++PGS+KISSTNADQEEAVEE+EIDYGGDSV Sbjct: 258 FTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTNADQEEAVEEIEIDYGGDSV 317 Query: 301 DIGFNVTYLLDVLNNLKGDFVNIALGDANSSALITIPDNADFKYVVMPMRI 351 DIGFNVTYLLDVLNNLKGD +NIALGDANSSALIT+PDN DFKYVVMPMRI Sbjct: 318 DIGFNVTYLLDVLNNLKGDSINIALGDANSSALITVPDNPDFKYVVMPMRI 368 >ref|YP_001098371.1| DNA polymerase III subunit beta [Herminiimonas arsenicoxydans] emb|CAL60242.1| DNA polymerase III, beta subunit [Herminiimonas arsenicoxydans] Length = 368 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/351 (90%), Positives = 340/351 (96%) Query: 1 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAEVGSGSEVTATTVAARKLL 60 VSGIVERRHTLPILANILIRKDGE+VSFLSTDIEVQITTHA+VGSG+E+ +TTVAARKLL Sbjct: 18 VSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQVGSGNEIASTTVAARKLL 77 Query: 61 DILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVTLPQKTL 120 DILRALPDSG+V++TL+NKR+TVQSGKSRFALQTLAAEEFPTVAQAE YNA+VTLPQKTL Sbjct: 78 DILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTVAQAEQYNAKVTLPQKTL 137 Query: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 180 KHLFNMVHFSMAQQDIRYYLNGLLLVV+GKNVIAVATDGHRLAFCQVATEQEF RQEVII Sbjct: 138 KHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLAFCQVATEQEFARQEVII 197 Query: 181 PRKTIIELQRLLEENDDPVQLEIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 PRKTIIELQRLLE+ D PV LEIAN+QVKLTF DIELISKLVEGKFPDYTRVVPKGYKNN Sbjct: 198 PRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIELISKLVEGKFPDYTRVVPKGYKNN 257 Query: 241 FTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDSV 300 FTIGR+ LLRSLQRAAIMTSDKFKGVR +++PGS+KISSTNADQEEAVEE+EIDYGGDSV Sbjct: 258 FTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTNADQEEAVEEIEIDYGGDSV 317 Query: 301 DIGFNVTYLLDVLNNLKGDFVNIALGDANSSALITIPDNADFKYVVMPMRI 351 DIGFNVTYLLDVLNNLKGD +NIALGDANSSALIT+PDN DFKYVVMPMRI Sbjct: 318 DIGFNVTYLLDVLNNLKGDNINIALGDANSSALITVPDNPDFKYVVMPMRI 368 >ref|ZP_08273138.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33395.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 351 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/351 (88%), Positives = 335/351 (95%) Query: 1 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAEVGSGSEVTATTVAARKLL 60 +SGIVERRHTLPILANILIRKDG+KVSFLSTDIEVQITTH V G E+ ATTVAARKLL Sbjct: 1 MSGIVERRHTLPILANILIRKDGDKVSFLSTDIEVQITTHITVDGGEELAATTVAARKLL 60 Query: 61 DILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVTLPQKTL 120 DILRALP+SG+V++TL+NKR+TVQSGKSRFALQTLAAEEFPTV QAEHY+AQ++LPQKTL Sbjct: 61 DILRALPESGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTVTQAEHYSAQLSLPQKTL 120 Query: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 180 KHLFNMVHFSMAQQDIRYYLNGLLLVV+GKNVIAVATDGHRLAFCQV TEQEF RQEVII Sbjct: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLAFCQVETEQEFTRQEVII 180 Query: 181 PRKTIIELQRLLEENDDPVQLEIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 PRKTIIELQRLLE+ D+ VQ++IA NQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN Sbjct: 181 PRKTIIELQRLLEDTDELVQIDIAPNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 Query: 241 FTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDSV 300 FT+GR+QLLRSLQRAAIMTSDKFKGVR ++ PGS+K+SSTNADQEE+VEE+EIDYGGDSV Sbjct: 241 FTLGRDQLLRSLQRAAIMTSDKFKGVRCIVTPGSMKVSSTNADQEESVEEIEIDYGGDSV 300 Query: 301 DIGFNVTYLLDVLNNLKGDFVNIALGDANSSALITIPDNADFKYVVMPMRI 351 DIGFNVTYLLDVLNNLK D VNIALGDANSSALITIPDNADFKYVVMPMRI Sbjct: 301 DIGFNVTYLLDVLNNLKCDQVNIALGDANSSALITIPDNADFKYVVMPMRI 351