BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0009.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778172.1| hypothetical protein Hsero_4803 [Herbaspiril...   143   9e-33
ref|YP_004755068.1| hypothetical protein CFU_4424 [Collimonas fu...    80   9e-14

>ref|YP_003778172.1| hypothetical protein Hsero_4803 [Herbaspirillum seropedicae SmR1]
 gb|ADJ66264.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 105

 Score =  143 bits (360), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 83/105 (79%)

Query: 1   MSILAIAFPVEAAVPVAQSLIGASLALTRPLLGLGALVTLLMVFKPLLAGIMRAVVAFFV 60
           MS L +AFP EAA+P AQ+LIG   A  RP LGLGALVT +MVFKPL+ G+ +A V    
Sbjct: 1   MSFLNLAFPAEAAMPFAQTLIGMLAAYVRPALGLGALVTFVMVFKPLILGLAQAAVLLVK 60

Query: 61  PRKSFEQRVAAHRFSGVRMLNRMANDYSGSQPNFAAELRNLAARD 105
           PRKS EQR+ AH+FSG RMLNRMAN+YS +QPNFAAELRN+AARD
Sbjct: 61  PRKSLEQRILAHKFSGKRMLNRMANEYSMTQPNFAAELRNMAARD 105


>ref|YP_004755068.1| hypothetical protein CFU_4424 [Collimonas fungivorans Ter331]
 gb|AEK64245.1| hypothetical protein CFU_4424 [Collimonas fungivorans Ter331]
          Length = 126

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 74/105 (70%)

Query: 1   MSILAIAFPVEAAVPVAQSLIGASLALTRPLLGLGALVTLLMVFKPLLAGIMRAVVAFFV 60
           MS+ A A P E A+  A +L+ A+ A  RPLLGLGAL TL++ FKPL  GI+RA +    
Sbjct: 22  MSVFAFALPAEIALFDASALLAAAAAALRPLLGLGALATLMVYFKPLWMGILRAALMLIK 81

Query: 61  PRKSFEQRVAAHRFSGVRMLNRMANDYSGSQPNFAAELRNLAARD 105
           PRKS EQR+A  +F G +++ RMAND++ SQPN AAELR LA RD
Sbjct: 82  PRKSLEQRIARSKFRGQQLIRRMANDHASSQPNLAAELRLLAGRD 126