BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0007.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778171.1| LysR family transcription regulator protein ... 617 e-175 ref|YP_001355337.1| LysR family transcriptional regulator [Janth... 513 e-143 ref|YP_004755067.1| transcriptional regulatory protein [Collimon... 513 e-143 ref|YP_001101646.1| LysR family transcriptional regulator [Hermi... 509 e-142 ref|YP_002942074.1| LysR family transcriptional regulator [Vario... 365 5e-99 >ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66263.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 617 bits (1591), Expect = e-175, Method: Compositional matrix adjust. Identities = 296/319 (92%), Positives = 310/319 (97%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDELVIRTAHGV 60 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLND+LVIRTAHGV Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 Query: 61 KPTPRAEELWPTVRRALSELEAVITPETFDVTRAQNTFRMAMVDATAALWLPSLVRTIMR 120 KPTPRAEELWPTVRRALSELEAVI PE+FD++RAQNTFRMAMVDATAALWLPSLVRTIMR Sbjct: 61 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 Query: 121 DAPRLKIRMMPLTTRDPRAMLLRGDVDLAVGFFPGVTAQLADGQGMVKTQISHERLYTGQ 180 DAPR+KIRMMPLTTRDPRAMLLRGD+DLAVGFFPGVTAQLADGQGM K+QISH RLYTGQ Sbjct: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ 180 Query: 181 YVCVMHKNHPLADKELTLDAYCSADHLLVSLSGKPHAVIDDVLSGMGRERKILLTVNQFF 240 YVCVMHK+HPLA + LTLD+YC+ADHLLVSLSGKPHAVIDDVL+GM RERKILLTVNQFF Sbjct: 181 YVCVMHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 Query: 241 TAGRIVASSELITVLPRHLIAATGMTEVLVVKELPFKTPEEHVDMLWHERDARNPAHKWL 300 TAGRIVASSELITVLPRHL+AATGM E LVVKELPF+TPEEHVDMLWHERDARNPAHKWL Sbjct: 241 TAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 Query: 301 RAHLVATTHDEFGRINMKR 319 RAHL ATTHDEFGRINMKR Sbjct: 301 RAHLSATTHDEFGRINMKR 319 >ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90833.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 319 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 244/319 (76%), Positives = 275/319 (86%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDELVIRTAHGV 60 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTL DELVIRTAHGV Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGV 60 Query: 61 KPTPRAEELWPTVRRALSELEAVITPETFDVTRAQNTFRMAMVDATAALWLPSLVRTIMR 120 KPT RAEELWP VRRALS+LEA +TP+TFDV+RA TFRMAM DATAALWLP LVR I + Sbjct: 61 KPTSRAEELWPVVRRALSDLEAAVTPDTFDVSRANTTFRMAMADATAALWLPFLVRAIEK 120 Query: 121 DAPRLKIRMMPLTTRDPRAMLLRGDVDLAVGFFPGVTAQLADGQGMVKTQISHERLYTGQ 180 DAP L +RM+PLTTR+PR MLLRGD+DLA+GFFPGV AQLA GQ +QI HERLYTG+ Sbjct: 121 DAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGE 180 Query: 181 YVCVMHKNHPLADKELTLDAYCSADHLLVSLSGKPHAVIDDVLSGMGRERKILLTVNQFF 240 YVCVM KNHPLA ELTLD YC+A HLLVS SG+ ++D+ L+ +GRER+ILLTVNQFF Sbjct: 181 YVCVMRKNHPLAKVELTLDNYCAAHHLLVSFSGRAKGLMDEALTNLGRERRILLTVNQFF 240 Query: 241 TAGRIVASSELITVLPRHLIAATGMTEVLVVKELPFKTPEEHVDMLWHERDARNPAHKWL 300 TAGR+VASS+LITVLPRHLIA+TGM E L+ K+LPF+ P+ HVDMLWHERDARNPAHKWL Sbjct: 241 TAGRVVASSDLITVLPRHLIASTGMAEALIAKDLPFELPDVHVDMLWHERDARNPAHKWL 300 Query: 301 RAHLVATTHDEFGRINMKR 319 R L A+T + GR+ +R Sbjct: 301 REQLSASTEEGIGRVKKRR 319 >ref|YP_004755067.1| transcriptional regulatory protein [Collimonas fungivorans Ter331] gb|AEK64244.1| Transcriptional regulatory protein [Collimonas fungivorans Ter331] Length = 321 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 246/316 (77%), Positives = 275/316 (87%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDELVIRTAHGV 60 MSFLTLDLNLLRVFDAVMTEQNLTRAA+ LAMTQPAVSNAL+RLRDTLNDEL+IRTAHGV Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAASRLAMTQPAVSNALKRLRDTLNDELLIRTAHGV 60 Query: 61 KPTPRAEELWPTVRRALSELEAVITPETFDVTRAQNTFRMAMVDATAALWLPSLVRTIMR 120 KPT AEELWP VRRAL++LE ITPETFDV+RA TF+MAM DATAALWLP LVRTI R Sbjct: 61 KPTQHAEELWPVVRRALTDLETAITPETFDVSRAHTTFQMAMADATAALWLPGLVRTIER 120 Query: 121 DAPRLKIRMMPLTTRDPRAMLLRGDVDLAVGFFPGVTAQLADGQGMVKTQISHERLYTGQ 180 DAP+L +RM+PLTTRDPR MLLRGDVDLAVGFFPGV AQLA GQ + I HERLYTG+ Sbjct: 121 DAPQLNLRMVPLTTRDPRQMLLRGDVDLAVGFFPGVAAQLAGGQTTSASPIHHERLYTGE 180 Query: 181 YVCVMHKNHPLADKELTLDAYCSADHLLVSLSGKPHAVIDDVLSGMGRERKILLTVNQFF 240 YVCVMHKNHPLA++ LTLD YC++ HLLVS SG+ H +ID+ L+ MGRER+ILLTVNQFF Sbjct: 181 YVCVMHKNHPLANQVLTLDNYCASHHLLVSFSGRAHGLIDETLAAMGRERRILLTVNQFF 240 Query: 241 TAGRIVASSELITVLPRHLIAATGMTEVLVVKELPFKTPEEHVDMLWHERDARNPAHKWL 300 TAGR+VASS+L+TVLPRHLI ATGMTE LV +ELPF TP HVDMLWHERD+RNPAHKWL Sbjct: 241 TAGRVVASSDLLTVLPRHLIGATGMTEELVARELPFPTPAVHVDMLWHERDSRNPAHKWL 300 Query: 301 RAHLVATTHDEFGRIN 316 R HL T H++F I+ Sbjct: 301 RGHLSETAHEKFSLID 316 >ref|YP_001101646.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL63525.1| putative transcriptional regulator, LysR family [Herminiimonas arsenicoxydans] Length = 319 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/319 (76%), Positives = 272/319 (85%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDELVIRTAHGV 60 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRD L DELVIRTAHGV Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGV 60 Query: 61 KPTPRAEELWPTVRRALSELEAVITPETFDVTRAQNTFRMAMVDATAALWLPSLVRTIMR 120 KPT RA ELWP VRRALS+LE +TP+TFDV+RA TFRMAM DATAALWLP LVR I + Sbjct: 61 KPTSRATELWPVVRRALSDLETAVTPDTFDVSRATTTFRMAMADATAALWLPFLVRAIEK 120 Query: 121 DAPRLKIRMMPLTTRDPRAMLLRGDVDLAVGFFPGVTAQLADGQGMVKTQISHERLYTGQ 180 +AP L +RM+PLTTR+PR MLLRGD+DLA+GFFPGV AQLA GQ +QI HERLYTG+ Sbjct: 121 EAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGE 180 Query: 181 YVCVMHKNHPLADKELTLDAYCSADHLLVSLSGKPHAVIDDVLSGMGRERKILLTVNQFF 240 YVCVM KNHPLA +ELTLD YC+A HLLVS SG+ ++DD LS +GRER+ILLTVNQFF Sbjct: 181 YVCVMRKNHPLAKEELTLDTYCAAHHLLVSFSGRAKGLMDDALSEVGRERRILLTVNQFF 240 Query: 241 TAGRIVASSELITVLPRHLIAATGMTEVLVVKELPFKTPEEHVDMLWHERDARNPAHKWL 300 TAGR+VASS+LITVLPRHLIA+TGM E L+ K+LPF PE HVDMLWHERDARNPAHKWL Sbjct: 241 TAGRVVASSDLITVLPRHLIASTGMEEALIAKDLPFSLPEVHVDMLWHERDARNPAHKWL 300 Query: 301 RAHLVATTHDEFGRINMKR 319 R L+ +T D GR+ +R Sbjct: 301 REQLITSTDDGIGRVKKRR 319 >ref|YP_002942074.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS16808.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 326 Score = 365 bits (937), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 178/314 (56%), Positives = 228/314 (72%), Gaps = 1/314 (0%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDELVIRTAHGV 60 ++F TLDLNLLRVFD VM E+NLTRAA L++TQPAVSNALRRLR+ L DELV R+ GV Sbjct: 3 VNFRTLDLNLLRVFDEVMAERNLTRAARNLSITQPAVSNALRRLREVLGDELVRRSGAGV 62 Query: 61 KPTPRAEELWPTVRRALSELEAVITPETFDVTRAQNTFRMAMVDATAALWLPSLVRTIMR 120 +PTPRA LWPTVR AL +L+ + P FD + A TF +AM DATAA +P LV+ + + Sbjct: 63 EPTPRALALWPTVRDALRQLQHTLAPGEFDASTADTTFLLAMADATAAELIPGLVQIVEK 122 Query: 121 DAPRLKIRMMPLTTRDPRAMLLRGDVDLAVGFFPGVTAQLAD-GQGMVKTQISHERLYTG 179 +AP + +R++PLTTRDPR ML + +VD+A+G+FP V A LA GQ V +RLY G Sbjct: 123 EAPAISLRVLPLTTRDPRRMLEQEEVDMAIGYFPAVIASLAARGQSGVGVAFETQRLYLG 182 Query: 180 QYVCVMHKNHPLADKELTLDAYCSADHLLVSLSGKPHAVIDDVLSGMGRERKILLTVNQF 239 QYVCVM + HPLA+ LTLD YC+A HLLVS SG+P+ ID L +GRER+I++TVNQF Sbjct: 183 QYVCVMRRGHPLANAPLTLDDYCAARHLLVSFSGRPYGFIDQTLGALGRERRIVVTVNQF 242 Query: 240 FTAGRIVASSELITVLPRHLIAATGMTEVLVVKELPFKTPEEHVDMLWHERDARNPAHKW 299 FTAGR+VA+S+L+TVLPRH + TG+ E LV+++LPF P HVD +WH R AH+W Sbjct: 243 FTAGRVVANSDLLTVLPRHFVTVTGIDEQLVLRDLPFDQPMVHVDAIWHRRAQHGHAHEW 302 Query: 300 LRAHLVATTHDEFG 313 LR L+ + F Sbjct: 303 LRTALLRSAAAAFA 316