BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0004.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778168.1| LysR family transcription regulator protein ... 452 e-125 ref|YP_004755058.1| LysR family transcriptional regulator [Colli... 435 e-120 ref|ZP_08275028.1| Transcriptional regulator, LysR family [Oxalo... 394 e-108 ref|YP_002007101.1| LysR family transcriptional regulator [Cupri... 341 9e-92 ref|YP_728090.1| LysR family transcriptional regulator [Ralstoni... 340 2e-91 >ref|YP_003778168.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66260.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/293 (74%), Positives = 254/293 (86%) Query: 1 MDFTQLRAFIAVAEEGNLTRAADRLHVTQPAVSLQIKLLQERLKLQLFVRTSAGMRLTND 60 MD TQLRAFI+VA EGNLTRAAD+LH+TQPAVSLQIK LQE L LQLF R++AGM LT + Sbjct: 1 MDLTQLRAFISVAHEGNLTRAADKLHLTQPAVSLQIKGLQESLGLQLFNRSAAGMVLTAE 60 Query: 61 GTKLLPVAERVLNTLQEFHQHADALHTSAGTLSGTLSLGTILDPEFIRLGAFLKLLVERY 120 G KLLP+AERVL +QE +HA +S G LSG+L++GTILDPEFIRLG FLKLLVER+ Sbjct: 61 GNKLLPLAERVLADVQELRRHAADFRSSTGELSGSLAIGTILDPEFIRLGGFLKLLVERH 120 Query: 121 PQLSTRLQHHMSGSVLQLLKTGELDVGFFLGTPGKGFHSLTLTPFTYNVIAPAGWKNRVA 180 PQLST+L HHMSGSVL ++ G+LDVGFFLG PG+GF S+ LT FTY VIAPAGWKNRV+ Sbjct: 121 PQLSTQLAHHMSGSVLNEIRAGKLDVGFFLGAPGQGFQSMELTSFTYKVIAPAGWKNRVS 180 Query: 181 GKGWKELAQLPWIWTPPESAHHRLLNRVFMQYKLTPNTVALVDQESSMLDLVKSGVGLSL 240 GKGWKEL++LPWIWTPPESAHHRLL+R+F Q+++ P+TVALVDQESSMLDLVKSGVGLSL Sbjct: 181 GKGWKELSRLPWIWTPPESAHHRLLSRIFAQHQVKPHTVALVDQESSMLDLVKSGVGLSL 240 Query: 241 ARESIALNQAHAHGLVIADAVDLSTELSFIALEKRKNEPAISAVFALLQNVWN 293 AR SIALNQAHAHGLVIADAV+LST+LSFI LEK +++P I AVF LLQ +W Sbjct: 241 ARASIALNQAHAHGLVIADAVELSTQLSFICLEKWQHDPVIQAVFRLLQEIWQ 293 >ref|YP_004755058.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK64235.1| Transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 295 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/294 (70%), Positives = 245/294 (83%), Gaps = 1/294 (0%) Query: 1 MDFTQLRAFIAVAEEGNLTRAADRLHVTQPAVSLQIKLLQERLKLQLFVRTSAGMRLTND 60 MD TQLRAF+ VA EGNLTRAA+ LHVTQPAVSLQIK LQ L LQLF R +GM LT+D Sbjct: 1 MDITQLRAFVTVAREGNLTRAAELLHVTQPAVSLQIKSLQASLNLQLFTRIPSGMALTDD 60 Query: 61 GTKLLPVAERVLNTLQEFHQHADALHT-SAGTLSGTLSLGTILDPEFIRLGAFLKLLVER 119 G KL+P AER + + E Q A++LH+ S+ LSG L++GTILDPEFIRLGAFL+ LVE Sbjct: 61 GVKLMPFAERAIAAMAELRQQAESLHSNSSEILSGKLAIGTILDPEFIRLGAFLQRLVES 120 Query: 120 YPQLSTRLQHHMSGSVLQLLKTGELDVGFFLGTPGKGFHSLTLTPFTYNVIAPAGWKNRV 179 YPQLST+LQH MSG VLQ +K+G LDVG++LGTP K FH LTLT FTY V+AP+GWK+RV Sbjct: 121 YPQLSTQLQHSMSGDVLQQIKSGHLDVGYYLGTPNKNFHRLTLTQFTYCVLAPSGWKSRV 180 Query: 180 AGKGWKELAQLPWIWTPPESAHHRLLNRVFMQYKLTPNTVALVDQESSMLDLVKSGVGLS 239 +GK W LA+LPWIWTPPESAHHRLL++ F QYK+TPN VALVDQE SMLDLVKSGVGLS Sbjct: 181 SGKDWPALAKLPWIWTPPESAHHRLLSKTFAQYKVTPNKVALVDQEPSMLDLVKSGVGLS 240 Query: 240 LARESIALNQAHAHGLVIADAVDLSTELSFIALEKRKNEPAISAVFALLQNVWN 293 L RES+AL +AHAHGLVI+D V+LSTELSFI LEKRK+EP I+A+FA+LQ++W Sbjct: 241 LVRESVALREAHAHGLVISDTVNLSTELSFITLEKRKDEPVIAAIFAILQSIWK 294 >ref|ZP_08275028.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF31502.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 291 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/293 (66%), Positives = 230/293 (78%), Gaps = 3/293 (1%) Query: 1 MDFTQLRAFIAVAEEGNLTRAADRLHVTQPAVSLQIKLLQERLKLQLFVRTSAGMRLTND 60 MDFTQLRAF+ +A EGNLTRAA LH+TQPAVSLQ+K LQ+ L + LF R+ GM+LT D Sbjct: 1 MDFTQLRAFVTIAREGNLTRAAQHLHLTQPAVSLQLKSLQKALGVTLFTRSPGGMQLTAD 60 Query: 61 GTKLLPVAERVLNTLQEFHQHADALHTSAGTLSGTLSLGTILDPEFIRLGAFLKLLVERY 120 G KLLP AERVL + EFHQ AL +S +SG L++GTILDPEF RLGAFLK LVE + Sbjct: 61 GEKLLPFAERVLTGIAEFHQGVRALQSS---ISGPLAIGTILDPEFTRLGAFLKRLVESH 117 Query: 121 PQLSTRLQHHMSGSVLQLLKTGELDVGFFLGTPGKGFHSLTLTPFTYNVIAPAGWKNRVA 180 PQLST+L+ MSG+VLQ ++TG LD G++LG P K FH LT FTYNV+AP GWK RVA Sbjct: 118 PQLSTQLRQGMSGNVLQQVRTGTLDAGYYLGIPPKEFHFQILTSFTYNVVAPQGWKARVA 177 Query: 181 GKGWKELAQLPWIWTPPESAHHRLLNRVFMQYKLTPNTVALVDQESSMLDLVKSGVGLSL 240 GK W LA LPWIW PPESAHHRLL + F +YK P VALVDQESSMLDLVKSGVGLSL Sbjct: 178 GKDWDALATLPWIWAPPESAHHRLLIKKFAEYKTLPEQVALVDQESSMLDLVKSGVGLSL 237 Query: 241 ARESIALNQAHAHGLVIADAVDLSTELSFIALEKRKNEPAISAVFALLQNVWN 293 RESIAL++AH HGLVIAD V LSTEL+FI+L+ RK EPAI++ F LL ++W+ Sbjct: 238 VRESIALHEAHVHGLVIADTVSLSTELTFISLQNRKTEPAIASAFDLLADLWH 290 >ref|YP_002007101.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ71040.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 295 Score = 341 bits (874), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 168/297 (56%), Positives = 221/297 (74%), Gaps = 7/297 (2%) Query: 1 MDFTQLRAFIAVAEEGNLTRAADRLHVTQPAVSLQIKLLQERLKLQLFVRTSAGMRLTND 60 MD LRAF+AVA EGNLTRAA RLH+TQPAVSLQ+K LQ +++LF RT+AG+ LT D Sbjct: 1 MDLHHLRAFVAVAREGNLTRAAQRLHLTQPAVSLQLKALQAAWRIRLFERTAAGLTLTAD 60 Query: 61 GTKLLPVAERVLNTLQEFHQHADALHTSAGTLSGTLSLGTILDPEFIRLGAFLKLLVERY 120 G LLP+AER+L+ + + A+H T+ G L++GTILDPEF RLG L+ LVER+ Sbjct: 61 GAALLPLAERILDGVGDLQHTVSAMHH---TVRGRLAIGTILDPEFTRLGPMLRTLVERH 117 Query: 121 PQLSTRLQHHMSGSVLQLLKTGELDVGFFLGTPGK-GFHSLTLTPFTYNVIAPAGWKNRV 179 PQ+ T L+H MSG VLQ +++G LDVGF+LG P + GFH+LTLTPF+Y V+AP GWK R Sbjct: 118 PQIGTELRHGMSGWVLQQVRSGALDVGFYLGQPAEPGFHALTLTPFSYYVVAPKGWKERT 177 Query: 180 AGKGWKELAQLPWIWTPPESAHHRLLNRVFMQYKLTPNT---VALVDQESSMLDLVKSGV 236 A + W +LA LPWIWTPPESAH+RLL+ F Q + P T VA VDQE+SM DLV+SGV Sbjct: 178 ALRSWAQLATLPWIWTPPESAHNRLLSAHFAQAGVDPATVPKVAHVDQEASMRDLVRSGV 237 Query: 237 GLSLARESIALNQAHAHGLVIADAVDLSTELSFIALEKRKNEPAISAVFALLQNVWN 293 GLSL R++IAL ++HAHGLVI + V + TEL+ + L R+++P ++A F + ++V+ Sbjct: 238 GLSLVRDAIALRESHAHGLVIVEGVSVQTELTLVCLAARRDDPVVAAAFGVAESVFR 294 >ref|YP_728090.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ94722.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 325 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 168/297 (56%), Positives = 220/297 (74%), Gaps = 7/297 (2%) Query: 1 MDFTQLRAFIAVAEEGNLTRAADRLHVTQPAVSLQIKLLQERLKLQLFVRTSAGMRLTND 60 +D LRAF+AVA EGNLTRAA RLH+TQPAVSLQ+K LQ +++LF RT+AG+ LT D Sbjct: 31 LDLHHLRAFVAVAREGNLTRAAQRLHLTQPAVSLQLKALQSAWRIRLFERTAAGLTLTAD 90 Query: 61 GTKLLPVAERVLNTLQEFHQHADALHTSAGTLSGTLSLGTILDPEFIRLGAFLKLLVERY 120 G LLP+AER+L+ + A+H T+ G L++GTILDPEF RLG L+ LVER+ Sbjct: 91 GAALLPLAERILDGVGNLQHTVSAMHH---TVRGRLAIGTILDPEFTRLGPMLRTLVERH 147 Query: 121 PQLSTRLQHHMSGSVLQLLKTGELDVGFFLG-TPGKGFHSLTLTPFTYNVIAPAGWKNRV 179 PQ+ T L+H MSG VLQ +++G LDVGF+LG P GFH+LTLTPF+Y V+AP GWK R Sbjct: 148 PQIGTELRHGMSGWVLQQVRSGALDVGFYLGQPPDAGFHALTLTPFSYYVVAPKGWKERT 207 Query: 180 AGKGWKELAQLPWIWTPPESAHHRLLNRVFMQYKLTPN---TVALVDQESSMLDLVKSGV 236 A + W +LA LPWIWTPPESAH+RLL+ F Q + P VA VDQE+SMLDLV+SGV Sbjct: 208 ALRSWAQLATLPWIWTPPESAHNRLLSARFAQAGVDPAGVPKVAHVDQEASMLDLVRSGV 267 Query: 237 GLSLARESIALNQAHAHGLVIADAVDLSTELSFIALEKRKNEPAISAVFALLQNVWN 293 GLSL R++IAL ++HAHGLVI + V + TEL+ + L R+++P ++AVF + ++V+ Sbjct: 268 GLSLVRDAIALRESHAHGLVIVEGVSVQTELTLVCLATRRDDPVVAAVFGVAESVFR 324