BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0002.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004755056.1| glucose-methanol-choline oxidoreductase [Col... 885 0.0 ref|YP_003778166.1| choline dehydrogenase [Herbaspirillum serope... 875 0.0 ref|YP_003606679.1| glucose-methanol-choline oxidoreductase [Bur... 758 0.0 ref|YP_001859265.1| glucose-methanol-choline oxidoreductase [Bur... 751 0.0 ref|ZP_03264661.1| glucose-methanol-choline oxidoreductase [Burk... 751 0.0 >ref|YP_004755056.1| glucose-methanol-choline oxidoreductase [Collimonas fungivorans Ter331] gb|AEK64233.1| glucose-methanol-choline oxidoreductase [Collimonas fungivorans Ter331] Length = 556 Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/541 (78%), Positives = 471/541 (87%), Gaps = 9/541 (1%) Query: 1 MESAGKYDYIIVGGGTAGCVLANRLSRDAGIKVLLIEAGAKDDYLWIHIPVGYLYCINNP 60 MESAGKYDYII+G GTAGCVLANRL++D+ +KVLLIEAGAKDDY+WIHIPVGYLYCINNP Sbjct: 11 MESAGKYDYIIIGAGTAGCVLANRLTQDSSVKVLLIEAGAKDDYIWIHIPVGYLYCINNP 70 Query: 61 RTDWLYRTEAXG-----SLIYPRGKVLGGCSSINGMIYMRGQERDYNEWAQLSGDDSWRW 115 RTDW+YRTE SLIYPRGKVLGG SSINGMIYMRGQ RDY++WAQL+GD +WRW Sbjct: 71 RTDWMYRTEPDAGLNGRSLIYPRGKVLGGSSSINGMIYMRGQARDYDQWAQLTGDPAWRW 130 Query: 116 DRVLPLFRKSEDHYKGSDEFHGAGGEWRVEKQRLSWEILDAFRDAAAETGIPKIDDFNRG 175 ++VLPLF+KSEDHY G+DEFHGAGGEWRVEKQRLSW+ILDAFRDAAAE GIPK+DDFNRG Sbjct: 131 EQVLPLFKKSEDHYNGADEFHGAGGEWRVEKQRLSWKILDAFRDAAAEVGIPKVDDFNRG 190 Query: 176 HNEGSSYFDVNQKRGIRWNASKAFLKPAMKNGNLDVMTGSHVKRLRIEQRD----TGPVC 231 NEG SYFDVNQKRGIRWNA+KAFL+ A GNL +MTG VKRL +E+ + G VC Sbjct: 191 DNEGCSYFDVNQKRGIRWNAAKAFLRSASGRGNLTIMTGCQVKRLLLERSEEDQRQGLVC 250 Query: 232 VGVEFTGGGSEWYAEATSETILAAGAVGSPHILQLSGIGPAALLQQHQIPVVKDLAGVGE 291 GVEF+GGG EW AEA+ ET+L+AGAVGSPHILQLSGIGPAALLQQHQIPV++D GVGE Sbjct: 251 KGVEFSGGGKEWRAEASRETLLSAGAVGSPHILQLSGIGPAALLQQHQIPVMQDTPGVGE 310 Query: 292 NLQDHLQIRMAFKVKGVKTLNMMAGNWYGKMMIGVQYAMFQSGPMSMAPSQLGVFAKSDA 351 NLQDHLQIRMAFKV GVKTLN M+ +W GK IG++Y + QSGPMSMAPSQLG FAKSDA Sbjct: 311 NLQDHLQIRMAFKVNGVKTLNAMSSSWLGKARIGLEYLLMQSGPMSMAPSQLGAFAKSDA 370 Query: 352 SQSSANLEYHVQPLSLEKFGDPLHPFPAFTASVCNLRPTSRGHIRLGSNDGALAPKITLN 411 Q++ANLEYHVQPLSLEKFGDPLH FPAFTASVCNLRP+SRGH+++ S APKITLN Sbjct: 371 GQATANLEYHVQPLSLEKFGDPLHAFPAFTASVCNLRPSSRGHVQIASGLAEGAPKITLN 430 Query: 412 YLSTEADRKVAADSLKLTRKIVSAPALRKYQPDECKPGVEYQSEEELYKAAGEIGTTIFH 471 YL TE DRKVAA SL LTR+I +APALRKY P+E KPG +Y++EEEL KAAGEIGTTIFH Sbjct: 431 YLDTEEDRKVAAASLLLTRRIAAAPALRKYAPEEFKPGPQYRTEEELIKAAGEIGTTIFH 490 Query: 472 PVGTCKMGRADDAQAVVDSQLRVRGVGGLRVVDASVMPTITSGNTNSPTLMIAEKAAELI 531 PVGTCKMGR DD AVVDSQLRV+GV GLRVVDASVMPTITSGNTNSPTLMIAE AA+ I Sbjct: 491 PVGTCKMGRGDDPMAVVDSQLRVKGVAGLRVVDASVMPTITSGNTNSPTLMIAEMAAKFI 550 Query: 532 R 532 + Sbjct: 551 K 551 >ref|YP_003778166.1| choline dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ66258.1| choline dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 539 Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/533 (77%), Positives = 463/533 (86%), Gaps = 6/533 (1%) Query: 1 MESAGKYDYIIVGGGTAGCVLANRLSRDAGIKVLLIEAGAKDDYLWIHIPVGYLYCINNP 60 M+SAG+YDYII+G GTAGCV+ANRLSR G KVLLIEAGAKDDY+WIHIPVGYLYCINNP Sbjct: 1 MQSAGQYDYIIIGAGTAGCVMANRLSRKTGKKVLLIEAGAKDDYIWIHIPVGYLYCINNP 60 Query: 61 RTDWLYRTEAXG-----SLIYPRGKVLGGCSSINGMIYMRGQERDYNEWAQLSGDDSWRW 115 RTDW++RTEA SLIYPRGKVLGGCSSINGMIYMRGQ RDY+ WA ++GDDSWRW Sbjct: 61 RTDWMFRTEADAGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWADVTGDDSWRW 120 Query: 116 DRVLPLFRKSEDHYKGSDEFHGAGGEWRVEKQRLSWEILDAFRDAAAETGIPKIDDFNRG 175 VLPLF+KSED++ G+ +FHGAGGEWRVEKQRL W+ILDAFRDAAAE GIPK++DFN G Sbjct: 121 QNVLPLFKKSEDYHLGAGQFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIPKVEDFNCG 180 Query: 176 HNEGSSYFDVNQKRGIRWNASKAFLKPAMKNGNLDVMTGSHVKRLRIEQRDTGPVCVGVE 235 NEG YFDVNQKRG+RWNASKAFL+PAMK+GNL +MTGSHV RLR+EQ + GPVC GVE Sbjct: 181 DNEGCGYFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEQGPVCTGVE 240 Query: 236 FTGGGSEWYAEATSETILAAGAVGSPHILQLSGIGPAALLQQHQIPVVKDLAGVGENLQD 295 FTGGGS W+AEA ETIL AGA+GSPHILQ+SGI ALLQQHQIPVV L GVGENLQD Sbjct: 241 FTGGGSAWFAEA-KETILCAGAIGSPHILQMSGIADPALLQQHQIPVVHALPGVGENLQD 299 Query: 296 HLQIRMAFKVKGVKTLNMMAGNWYGKMMIGVQYAMFQSGPMSMAPSQLGVFAKSDASQSS 355 HLQ+RM FKV G KTLN MA GKM IG+QY QSGPMSMAPSQLG FAKSDA Q+S Sbjct: 300 HLQMRMVFKVNGAKTLNAMASTLVGKMQIGLQYLFTQSGPMSMAPSQLGAFAKSDAQQAS 359 Query: 356 ANLEYHVQPLSLEKFGDPLHPFPAFTASVCNLRPTSRGHIRLGSNDGALAPKITLNYLST 415 ANL+YHVQPLSLEKFGDPLH FPAFTASVCNLRPTSRGH+RL S D ALAP+IT NYLST Sbjct: 360 ANLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLASGDHALAPRITTNYLST 419 Query: 416 EADRKVAADSLKLTRKIVSAPALRKYQPDECKPGVEYQSEEELYKAAGEIGTTIFHPVGT 475 E D KVAA++L+LTR+I ++PAL +Y+P+E KPG Y++EE+LY+AAGE+GTTIFHPVGT Sbjct: 420 EEDLKVAANALRLTRRIAASPALSRYRPEEYKPGAHYETEEDLYRAAGEVGTTIFHPVGT 479 Query: 476 CKMGRADDAQAVVDSQLRVRGVGGLRVVDASVMPTITSGNTNSPTLMIAEKAA 528 C+MGR+DDA AVVD+Q RVRGVGGL V DASVMP+ITSGNTNSPT+MIAEK A Sbjct: 480 CRMGRSDDAMAVVDAQGRVRGVGGLSVADASVMPSITSGNTNSPTVMIAEKVA 532 >ref|YP_003606679.1| glucose-methanol-choline oxidoreductase [Burkholderia sp. CCGE1002] gb|ADG17168.1| glucose-methanol-choline oxidoreductase [Burkholderia sp. CCGE1002] Length = 571 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/540 (66%), Positives = 438/540 (81%), Gaps = 12/540 (2%) Query: 5 GKYDYIIVGGGTAGCVLANRLSRDAGIKVLLIEAGAKDDYLWIHIPVGYLYCINNPRTDW 64 G++DY+IVG GTAGCVLANRL+ D I+VLL+EAG KDDY WIH+PVGYLYCI NPRTDW Sbjct: 16 GEFDYVIVGAGTAGCVLANRLTEDPEIRVLLLEAGGKDDYHWIHVPVGYLYCIGNPRTDW 75 Query: 65 LYRTEAXG-----SLIYPRGKVLGGCSSINGMIYMRGQERDYNEWAQLSGDDSWRWDRVL 119 LY+T+A +L YPRG+VLGG SSINGMIYMRGQ DY+EWA+++ D +W W+ VL Sbjct: 76 LYKTQAEPGLNGRTLSYPRGRVLGGSSSINGMIYMRGQREDYDEWARVTNDSTWSWNAVL 135 Query: 120 PLFRKSEDHYKGSDEFHGAGGEWRVEKQRLSWEILDAFRDAAAETGIPKIDDFNRGHNEG 179 P+FR+SEDH+ G++E HGAGG WRVEKQRL W+IL+ F AA +TGIP DDFNRG N G Sbjct: 136 PVFRRSEDHHGGANEAHGAGGPWRVEKQRLKWKILEEFAQAAQQTGIPATDDFNRGDNTG 195 Query: 180 SSYFDVNQKRGIRWNASKAFLKPAMKNGNLDVMTGSHVKRLRIEQRDTGPVCVGVEFTGG 239 YFDVNQKRGIRWNASKAFL+PA+K GNL V+TG+H +R+ + R C GVE+ GG Sbjct: 196 VGYFDVNQKRGIRWNASKAFLRPALKRGNLTVITGAHTQRVVFDGRR----CTGVEYRGG 251 Query: 240 GSEWYAEATSETILAAGAVGSPHILQLSGIGPAALLQQHQIPVVKDLAGVGENLQDHLQI 299 +++A+A E IL+AGAV SP +L+LSG+G A LQ I VV+DL GVGENLQDHLQ+ Sbjct: 252 DVDYFAKARCEVILSAGAVNSPQLLELSGVGNGARLQNLGIEVVQDLRGVGENLQDHLQL 311 Query: 300 RMAFKVKGVKTLNMMAGNWYGKMMIGVQYAMFQSGPMSMAPSQLGVFAKSDA---SQSSA 356 RMA++V+GV+TLN M+ +W+GK+MIG+QYA+FQSGPMSM+PSQLG FAKSDA S S Sbjct: 312 RMAYQVQGVRTLNTMSAHWWGKLMIGMQYALFQSGPMSMSPSQLGAFAKSDADDRSLSRP 371 Query: 357 NLEYHVQPLSLEKFGDPLHPFPAFTASVCNLRPTSRGHIRLGSNDGALAPKITLNYLSTE 416 +LEYHVQPLSL++FG+PLH F AFTASVC+LRPTSRG I + S D A P I NYLSTE Sbjct: 372 DLEYHVQPLSLDRFGEPLHRFNAFTASVCHLRPTSRGSIHIASADTAAPPLIAPNYLSTE 431 Query: 417 ADRKVAADSLKLTRKIVSAPALRKYQPDECKPGVEYQSEEELYKAAGEIGTTIFHPVGTC 476 DR VAA++L+LTR+IV+APAL +YQP E PG++YQSEEEL +AAG +GTTIFHPVGTC Sbjct: 432 YDRHVAANALRLTRRIVAAPALARYQPREILPGLQYQSEEELQQAAGAVGTTIFHPVGTC 491 Query: 477 KMGRADDAQAVVDSQLRVRGVGGLRVVDASVMPTITSGNTNSPTLMIAEKAAELIRAARR 536 +MG DD AVVD++LRV GV GLRVVDASVMP ITSGNTNSPTLMIAE+A+++IR RR Sbjct: 492 RMGTTDDPAAVVDNRLRVIGVEGLRVVDASVMPNITSGNTNSPTLMIAERASDMIREDRR 551 >ref|YP_001859265.1| glucose-methanol-choline oxidoreductase [Burkholderia phymatum STM815] gb|ACC72219.1| glucose-methanol-choline oxidoreductase [Burkholderia phymatum STM815] Length = 564 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/540 (65%), Positives = 435/540 (80%), Gaps = 12/540 (2%) Query: 5 GKYDYIIVGGGTAGCVLANRLSRDAGIKVLLIEAGAKDDYLWIHIPVGYLYCINNPRTDW 64 G++DYII+G GTAGCVLANRL+ D+ + VLL+EAG KDDY WIH+PVGYLYCI NPRTDW Sbjct: 10 GEFDYIIIGAGTAGCVLANRLTEDSDVTVLLLEAGGKDDYHWIHVPVGYLYCIGNPRTDW 69 Query: 65 LYRTEAXG-----SLIYPRGKVLGGCSSINGMIYMRGQERDYNEWAQLSGDDSWRWDRVL 119 LY+T+A +L YPRG+VLGGCSSINGMIYMRGQ DY+EWA+++ D SW WD VL Sbjct: 70 LYKTQAEPGLNGRALSYPRGRVLGGCSSINGMIYMRGQREDYDEWARVTNDSSWAWDAVL 129 Query: 120 PLFRKSEDHYKGSDEFHGAGGEWRVEKQRLSWEILDAFRDAAAETGIPKIDDFNRGHNEG 179 P+FR+SEDH+ G++EFHG GG+WRVEKQRL W+IL+ F AA ETGIP DDFNRG N G Sbjct: 130 PVFRRSEDHHGGANEFHGVGGQWRVEKQRLKWKILEMFAQAATETGIPATDDFNRGDNTG 189 Query: 180 SSYFDVNQKRGIRWNASKAFLKPAMKNGNLDVMTGSHVKRLRIEQRDTGPVCVGVEFTGG 239 YFDVNQKRGIRWNASKAFL+PAM+ NL V+TG+H +R+ E G CVGVE+ G Sbjct: 190 VGYFDVNQKRGIRWNASKAFLRPAMQRPNLTVITGAHTQRVVFE----GKRCVGVEYRGD 245 Query: 240 GSEWYAEATSETILAAGAVGSPHILQLSGIGPAALLQQHQIPVVKDLAGVGENLQDHLQI 299 E+ A+A E I+++GAV SP +L+LSG+G A LQ+ I VV DL GVGENLQDHLQ+ Sbjct: 246 HVEYIAKARLEVIMSSGAVNSPQLLELSGVGNGARLQKLGIEVVNDLRGVGENLQDHLQL 305 Query: 300 RMAFKVKGVKTLNMMAGNWYGKMMIGVQYAMFQSGPMSMAPSQLGVFAKSDA---SQSSA 356 RMA+KV GV+TLN + +W+GKM IG+QY + QSGPMSM+PSQLG FAKSD + + Sbjct: 306 RMAYKVHGVRTLNTASAHWWGKMAIGLQYLLMQSGPMSMSPSQLGAFAKSDTDDRTLTRP 365 Query: 357 NLEYHVQPLSLEKFGDPLHPFPAFTASVCNLRPTSRGHIRLGSNDGALAPKITLNYLSTE 416 +LEYHVQPLSL+KFG+PLH F AFTASVC+LRPTSRG + + S D +AP I NYLST+ Sbjct: 366 DLEYHVQPLSLDKFGEPLHRFNAFTASVCHLRPTSRGSVHIESRDPHVAPLIAPNYLSTD 425 Query: 417 ADRKVAADSLKLTRKIVSAPALRKYQPDECKPGVEYQSEEELYKAAGEIGTTIFHPVGTC 476 DR VAA++L+LTR+I +APAL++Y+P+E PG+++Q+EEEL AAG +GTTIFHPVGTC Sbjct: 426 YDRHVAANALRLTRRIAAAPALQRYRPEEILPGIQFQTEEELQLAAGNVGTTIFHPVGTC 485 Query: 477 KMGRADDAQAVVDSQLRVRGVGGLRVVDASVMPTITSGNTNSPTLMIAEKAAELIRAARR 536 +MG ADD AVVDS+LRV GV GLRVVDASVMPTITSGNTNSPTLMIAE+A+++IR RR Sbjct: 486 RMGTADDPGAVVDSRLRVVGVEGLRVVDASVMPTITSGNTNSPTLMIAERASDMIRVDRR 545 >ref|ZP_03264661.1| glucose-methanol-choline oxidoreductase [Burkholderia sp. H160] gb|EEA03818.1| glucose-methanol-choline oxidoreductase [Burkholderia sp. H160] Length = 571 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/540 (66%), Positives = 433/540 (80%), Gaps = 12/540 (2%) Query: 5 GKYDYIIVGGGTAGCVLANRLSRDAGIKVLLIEAGAKDDYLWIHIPVGYLYCINNPRTDW 64 G++DYIIVG GTAGCVLANRL+ D I VLL+EAG KDDY WIH+PVGYLYCI NPRTDW Sbjct: 16 GEFDYIIVGAGTAGCVLANRLTEDPDIHVLLLEAGGKDDYHWIHVPVGYLYCIGNPRTDW 75 Query: 65 LYRTEAXG-----SLIYPRGKVLGGCSSINGMIYMRGQERDYNEWAQLSGDDSWRWDRVL 119 LY+T+A +L YPRG+VLGG SSINGMIYMRGQ DY+EWA+++ D +W WD VL Sbjct: 76 LYKTQAEPGLNGRALSYPRGRVLGGSSSINGMIYMRGQREDYDEWARVTNDRTWSWDAVL 135 Query: 120 PLFRKSEDHYKGSDEFHGAGGEWRVEKQRLSWEILDAFRDAAAETGIPKIDDFNRGHNEG 179 P+FR+SEDHY G+ E HGAGG WRVEKQRL W+IL+ F AA +TGIP DDFNRG N G Sbjct: 136 PIFRRSEDHYGGTTESHGAGGPWRVEKQRLKWKILEEFAQAAQQTGIPATDDFNRGDNTG 195 Query: 180 SSYFDVNQKRGIRWNASKAFLKPAMKNGNLDVMTGSHVKRLRIEQRDTGPVCVGVEFTGG 239 YFDVNQKRGIRWNASKAFL+PA+K GNL V+TG+H +R+ + R C GVE+ GG Sbjct: 196 VGYFDVNQKRGIRWNASKAFLRPALKRGNLTVITGAHTQRVVFDGRR----CNGVEYRGG 251 Query: 240 GSEWYAEATSETILAAGAVGSPHILQLSGIGPAALLQQHQIPVVKDLAGVGENLQDHLQI 299 ++ A+A E IL+AGAV SP +L+LSG+G A LQ I VV DL GVGENLQDHLQ+ Sbjct: 252 EVDYLAKARCEVILSAGAVNSPQLLELSGVGNGARLQNLGIEVVHDLRGVGENLQDHLQL 311 Query: 300 RMAFKVKGVKTLNMMAGNWYGKMMIGVQYAMFQSGPMSMAPSQLGVFAKSDA---SQSSA 356 RMA++V+GV+TLN ++ +W+GK+MIG+QYA+FQSGPMSM+PSQLG FAKSDA S + Sbjct: 312 RMAYQVQGVRTLNTISAHWWGKLMIGMQYALFQSGPMSMSPSQLGAFAKSDADDRSLTRP 371 Query: 357 NLEYHVQPLSLEKFGDPLHPFPAFTASVCNLRPTSRGHIRLGSNDGALAPKITLNYLSTE 416 +LEYHVQPLSL++FG+PLH F AFTASVC+LRPTSRG I + S D A P I NYLST+ Sbjct: 372 DLEYHVQPLSLDRFGEPLHRFNAFTASVCHLRPTSRGSIHIASADAAAPPLIAPNYLSTD 431 Query: 417 ADRKVAADSLKLTRKIVSAPALRKYQPDECKPGVEYQSEEELYKAAGEIGTTIFHPVGTC 476 DR VAA +L+LTR+IV+APAL +YQP E PG++YQSEEEL +AAG +GTTIFHPVGTC Sbjct: 432 YDRHVAAKALRLTRRIVAAPALARYQPREILPGLQYQSEEELQQAAGAVGTTIFHPVGTC 491 Query: 477 KMGRADDAQAVVDSQLRVRGVGGLRVVDASVMPTITSGNTNSPTLMIAEKAAELIRAARR 536 +MG DD AVVD++LRV GV GLRVVDASVMP ITSGNTNSPTLMIAE+A+++IR RR Sbjct: 492 RMGTGDDPAAVVDNRLRVFGVEGLRVVDASVMPNITSGNTNSPTLMIAERASDMIREDRR 551