BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0071.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02886281.1| transcriptional regulator, TetR family [Burkh... 292 2e-77 ref|ZP_08181897.1| transcriptional regulator, TetR family [Xanth... 283 8e-75 ref|YP_004215757.1| TetR family transcriptional regulator [Rahne... 283 8e-75 ref|YP_003004778.1| TetR family transcriptional regulator [Dicke... 280 5e-74 ref|YP_004501643.1| regulatory protein TetR [Serratia sp. AS12] ... 278 4e-73 >ref|ZP_02886281.1| transcriptional regulator, TetR family [Burkholderia graminis C4D1M] gb|EDT08165.1| transcriptional regulator, TetR family [Burkholderia graminis C4D1M] Length = 198 Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 142/189 (75%), Positives = 160/189 (84%), Gaps = 1/189 (0%) Query: 1 VDSPKRSDAVQNRERILTVALAELIRSAEVPLSAIAKKAGVGQGTFYRHFPTREALVMEV 60 D P R+DA+QNRERIL VALAEL SA+VPLS IA+KAGVGQGTFYRHFPTRE LVMEV Sbjct: 7 TDRPARADALQNRERILAVALAELTVSADVPLSTIARKAGVGQGTFYRHFPTRETLVMEV 66 Query: 61 YRHEMSQVVEFAKYLLETRAPDQALREWMNRLAEYAITKAGLAEAIRLASVSKECAPGTG 120 YR+EM QV FA++LLETR+PDQALREWM RLAEYA+TKAGLA AIR S+ ++C PG Sbjct: 67 YRYEMWQVANFAEHLLETRSPDQALREWMKRLAEYAMTKAGLANAIREVSLMRDC-PGKA 125 Query: 121 GYASVIAAAQMLLDANEKAGTIRAGITADDFFLAIAGIWQIDANADWRPRLAWLMDLVME 180 GYA V+AAAQ+LLDANEKAGTIRAG+T DDFFLA AGIWQID N +W+PRLAWL+D VM Sbjct: 126 GYAPVVAAAQLLLDANEKAGTIRAGVTTDDFFLASAGIWQIDFNDEWQPRLAWLIDFVMA 185 Query: 181 GLRAGAPVR 189 GLR AP R Sbjct: 186 GLRTVAPPR 194 >ref|ZP_08181897.1| transcriptional regulator, TetR family [Xanthomonas gardneri ATCC 19865] gb|EGD20482.1| transcriptional regulator, TetR family [Xanthomonas gardneri ATCC 19865] Length = 183 Score = 283 bits (725), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 140/180 (77%), Positives = 157/180 (87%), Gaps = 1/180 (0%) Query: 10 VQNRERILTVALAELIRSAEVPLSAIAKKAGVGQGTFYRHFPTREALVMEVYRHEMSQVV 69 +QNRER+L+VALAEL+RSA+VPLSAIAKKAGVGQGTFYRHFPTREALV+EVYRHEM QV Sbjct: 1 MQNRERLLSVALAELVRSADVPLSAIAKKAGVGQGTFYRHFPTREALVIEVYRHEMLQVT 60 Query: 70 EFAKYLLETRAPDQALREWMNRLAEYAITKAGLAEAIRLASVSKECAPGTGGYASVIAAA 129 A+ LL+T P+QALREWMNRLAEYAITKAGLA+A+R + +KECA G GYA VIAAA Sbjct: 61 GLAEQLLKTLPPEQALREWMNRLAEYAITKAGLADALRTVANAKECA-GNAGYAPVIAAA 119 Query: 130 QMLLDANEKAGTIRAGITADDFFLAIAGIWQIDANADWRPRLAWLMDLVMEGLRAGAPVR 189 Q+LLDANEKAGTIR GIT D FFLAIAGIWQIDA +W+PRL WLM+ VMEGL AGAP R Sbjct: 120 QLLLDANEKAGTIRPGITTDKFFLAIAGIWQIDATENWQPRLTWLMETVMEGLCAGAPGR 179 >ref|YP_004215757.1| TetR family transcriptional regulator [Rahnella sp. Y9602] gb|ADW76630.1| regulatory protein TetR [Rahnella sp. Y9602] Length = 198 Score = 283 bits (725), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 140/189 (74%), Positives = 160/189 (84%), Gaps = 1/189 (0%) Query: 1 VDSPKRSDAVQNRERILTVALAELIRSAEVPLSAIAKKAGVGQGTFYRHFPTREALVMEV 60 D P R+DA++NRERILTVALAEL S++VPLSAIAKKAGVGQGTFYRHFPTREALVMEV Sbjct: 7 TDRPVRADALRNRERILTVALAELTCSSDVPLSAIAKKAGVGQGTFYRHFPTREALVMEV 66 Query: 61 YRHEMSQVVEFAKYLLETRAPDQALREWMNRLAEYAITKAGLAEAIRLASVSKECAPGTG 120 YR+EM QV +FA++LL+TR PDQALREWM RLAEY +TKAGLA+AIR S ++C Sbjct: 67 YRYEMLQVAKFAEHLLQTRPPDQALREWMKRLAEYGMTKAGLAKAIREVSFMRDCQAKV- 125 Query: 121 GYASVIAAAQMLLDANEKAGTIRAGITADDFFLAIAGIWQIDANADWRPRLAWLMDLVME 180 GYA VIAAAQ+LLDANEKAGTIRAG+T DDFFLA AGIWQID + +PRLAWL+D VM Sbjct: 126 GYAPVIAAAQLLLDANEKAGTIRAGVTTDDFFLATAGIWQIDFKGEGQPRLAWLIDFVMA 185 Query: 181 GLRAGAPVR 189 GL AGAP+R Sbjct: 186 GLCAGAPLR 194 >ref|YP_003004778.1| TetR family transcriptional regulator [Dickeya zeae Ech1591] gb|ACT07299.1| transcriptional regulator, TetR family [Dickeya zeae Ech1591] Length = 198 Score = 280 bits (717), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 136/189 (71%), Positives = 160/189 (84%), Gaps = 1/189 (0%) Query: 1 VDSPKRSDAVQNRERILTVALAELIRSAEVPLSAIAKKAGVGQGTFYRHFPTREALVMEV 60 ++ P R+DA QNRERIL++AL EL SA+VPL+ IAKKAGVGQ TFYRHFP+RE LVMEV Sbjct: 7 MERPARADAQQNRERILSIALQELTVSADVPLTTIAKKAGVGQATFYRHFPSREILVMEV 66 Query: 61 YRHEMSQVVEFAKYLLETRAPDQALREWMNRLAEYAITKAGLAEAIRLASVSKECAPGTG 120 YR+EM QV ++A++LL+TR PDQALREW+ RLAEYA+TKAGLA AIR S++ + PG Sbjct: 67 YRYEMLQVTKYAEHLLQTRTPDQALREWIIRLAEYAMTKAGLANAIREVSLAGDY-PGKA 125 Query: 121 GYASVIAAAQMLLDANEKAGTIRAGITADDFFLAIAGIWQIDANADWRPRLAWLMDLVME 180 GYA VI AAQMLLDANEKAGTI AG+T DDFFLAIAGIWQID N +WRPRL WL+D+VM Sbjct: 126 GYAPVIDAAQMLLDANEKAGTIHAGVTTDDFFLAIAGIWQIDFNDEWRPRLIWLIDIVMA 185 Query: 181 GLRAGAPVR 189 GLRAGAP+R Sbjct: 186 GLRAGAPLR 194 >ref|YP_004501643.1| regulatory protein TetR [Serratia sp. AS12] ref|YP_004506595.1| regulatory protein TetR [Serratia sp. AS9] gb|AEF46334.1| regulatory protein TetR [Serratia sp. AS9] gb|AEF51286.1| regulatory protein TetR [Serratia sp. AS12] gb|AEG28994.1| regulatory protein TetR [Serratia sp. AS13] Length = 198 Score = 278 bits (710), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 133/190 (70%), Positives = 160/190 (84%), Gaps = 1/190 (0%) Query: 1 VDSPKRSDAVQNRERILTVALAELIRSAEVPLSAIAKKAGVGQGTFYRHFPTREALVMEV 60 ++ P R+DA QNRERIL+VAL EL SA+VPLSAIAKKAGVGQ TFYRHFP+RE LVMEV Sbjct: 7 MERPARADAQQNRERILSVALQELTLSADVPLSAIAKKAGVGQATFYRHFPSREILVMEV 66 Query: 61 YRHEMSQVVEFAKYLLETRAPDQALREWMNRLAEYAITKAGLAEAIRLASVSKECAPGTG 120 YR+EM QV +FA++LL+T PDQALREW+NRLAEYAITKAGLA AIR S++++C Sbjct: 67 YRYEMLQVTKFAEHLLQTLPPDQALREWINRLAEYAITKAGLANAIREVSLTRDCQE-KA 125 Query: 121 GYASVIAAAQMLLDANEKAGTIRAGITADDFFLAIAGIWQIDANADWRPRLAWLMDLVME 180 GYA VIAAAQ+LLDAN++AGT+ G+T DDFFLAIAGIWQ+D N +W+P+L WL+D+VM Sbjct: 126 GYAPVIAAAQLLLDANKEAGTLHTGVTTDDFFLAIAGIWQLDFNDEWQPQLTWLIDIVMA 185 Query: 181 GLRAGAPVRV 190 GLRAGAP R Sbjct: 186 GLRAGAPRRT 195