BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0069.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_932751.1| LysR family transcriptional regulator [Azoarcus... 416 e-114 ref|YP_001765782.1| LysR family transcriptional regulator [Burkh... 399 e-109 ref|ZP_02354582.1| transcriptional regulator, LysR family protei... 393 e-107 ref|YP_001862466.1| LysR family transcriptional regulator [Burkh... 392 e-107 ref|ZP_02886741.1| transcriptional regulator, LysR family [Burkh... 389 e-106 >ref|YP_932751.1| LysR family transcriptional regulator [Azoarcus sp. BH72] emb|CAL93864.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72] Length = 308 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/291 (68%), Positives = 233/291 (80%) Query: 5 TAPDLAFFVVLAKLGSLSGTARELGLTPPAVTKRLMMLEQRLGVRLVNRTTRRFSLTSEG 64 A +LAFF++LA GS + AREL LTPPAV+KRL +EQRLGVRL+NR+TRR SLT EG Sbjct: 4 VASELAFFLLLADKGSFTAAARELNLTPPAVSKRLAQIEQRLGVRLLNRSTRRVSLTDEG 63 Query: 65 ESYLAQATQILDRIRDMEESVSSGRAAPKGLLRVNATPGFGRTRIAPLVSRFAHDHPDVE 124 E YL A +I+ I DME S+ S RAAPKGLLRVNAT GFGRT IAP+VS FA HP+VE Sbjct: 64 ELYLEHARRIVADIEDMEASLGSRRAAPKGLLRVNATLGFGRTTIAPIVSAFARQHPEVE 123 Query: 125 VELQLTDRPISLVEEAYDLAIRFGELPDTRLSARKLMSNKRFLCASPAYLKKAGEPLTPE 184 V+LQLTD PI LV +DLAIRFGELPD+RLSARKLMSN+RFLCASPAYL G P TP Sbjct: 124 VQLQLTDAPIDLVATGFDLAIRFGELPDSRLSARKLMSNRRFLCASPAYLDAHGTPQTPA 183 Query: 185 ELHRHRCILHRQNDDVYGTWRLEKGKKIELVKVRGAVSSNDGDVVMNWALEGHGIVQRSE 244 EL RH CILHRQNDD YG WRL +G+ +E VKVRG +SSNDGDVV+ WAL+GHGI+ RSE Sbjct: 184 ELARHACILHRQNDDAYGIWRLARGRHVETVKVRGTLSSNDGDVVLGWALDGHGILIRSE 243 Query: 245 WDAAKYLASGRLKEVMPGYALPSANLYVYYLSRRNLPAKVRSFVDFLVAEF 295 WD AKYL SGRL+ V+P Y LP+A+LY Y +RRN PA+VR+F+DFL+A F Sbjct: 244 WDLAKYLESGRLRAVLPDYTLPTADLYAVYPARRNQPARVRAFIDFLLARF 294 >ref|YP_001765782.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA91660.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 320 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 188/298 (63%), Positives = 233/298 (78%) Query: 1 VKIETAPDLAFFVVLAKLGSLSGTARELGLTPPAVTKRLMMLEQRLGVRLVNRTTRRFSL 60 + +TA D FF++LAKL SLSG AR L L+PPA TKRL ++EQRLGVRLVNRTTR SL Sbjct: 3 TETQTATDFEFFILLAKLRSLSGAARALDLSPPAATKRLGVIEQRLGVRLVNRTTRSVSL 62 Query: 61 TSEGESYLAQATQILDRIRDMEESVSSGRAAPKGLLRVNATPGFGRTRIAPLVSRFAHDH 120 T EGE YL A+QI+ ++R+MEE +S G+ P+GLLR+NAT GFGRT IAPLVS FA + Sbjct: 63 TPEGEIYLRYASQIVGQVREMEEELSGGKGDPQGLLRINATLGFGRTTIAPLVSEFAKRY 122 Query: 121 PDVEVELQLTDRPISLVEEAYDLAIRFGELPDTRLSARKLMSNKRFLCASPAYLKKAGEP 180 P VEV+ ++TDRP+ LVE A+D+AIRFGELPD+RLSAR++MSN+RFLCASP YL+K G P Sbjct: 123 PSVEVQFEVTDRPVDLVEGAFDMAIRFGELPDSRLSARRIMSNRRFLCASPKYLEKYGSP 182 Query: 181 LTPEELHRHRCILHRQNDDVYGTWRLEKGKKIELVKVRGAVSSNDGDVVMNWALEGHGIV 240 E+L HRCI+HRQNDD YG WR IE +KV+GA+SSNDGD+V+ WALEGHG++ Sbjct: 183 ERVEDLAAHRCIIHRQNDDAYGVWRYIVNDHIETIKVKGALSSNDGDIVLRWALEGHGVL 242 Query: 241 QRSEWDAAKYLASGRLKEVMPGYALPSANLYVYYLSRRNLPAKVRSFVDFLVAEFKGP 298 RSEWD AKYL SGRL V+P LPSA+LYVYY ++N A+ R+F+DFLV F+ P Sbjct: 243 IRSEWDLAKYLQSGRLNLVLPNTVLPSADLYVYYPRQKNQTARARAFIDFLVNRFQAP 300 >ref|ZP_02354582.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] ref|ZP_02361777.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 308 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/298 (63%), Positives = 232/298 (77%) Query: 1 VKIETAPDLAFFVVLAKLGSLSGTARELGLTPPAVTKRLMMLEQRLGVRLVNRTTRRFSL 60 +K DL FFV++A+ GSLS AR L +TPPA TKRL +LE RLG RLVNRTTR FSL Sbjct: 1 MKAHQIDDLTFFVLVARHGSLSAAARVLDVTPPAATKRLALLENRLGARLVNRTTRSFSL 60 Query: 61 TSEGESYLAQATQILDRIRDMEESVSSGRAAPKGLLRVNATPGFGRTRIAPLVSRFAHDH 120 TSEGE+YL AT+I+ IR ME++V + R+ P+GLLRVNAT GFGRT IAPLVS FA H Sbjct: 61 TSEGETYLRYATRIVADIRQMEDAVRASRSVPRGLLRVNATLGFGRTAIAPLVSEFAKLH 120 Query: 121 PDVEVELQLTDRPISLVEEAYDLAIRFGELPDTRLSARKLMSNKRFLCASPAYLKKAGEP 180 P VEV+L +TDRP+ LVE YDLAIRFGE PD R++AR++MSN+RFLCASPAYL++ G P Sbjct: 121 PQVEVQLDVTDRPVDLVEGGYDLAIRFGEPPDKRINARRIMSNRRFLCASPAYLQRHGAP 180 Query: 181 LTPEELHRHRCILHRQNDDVYGTWRLEKGKKIELVKVRGAVSSNDGDVVMNWALEGHGIV 240 + +L HRCI+HRQNDD +G WR + +IE+VKVRGA+SSNDGD+V+ WAL+GHGI+ Sbjct: 181 ASLADLAAHRCIVHRQNDDAHGVWRFVRDGEIEVVKVRGALSSNDGDIVLGWALDGHGIL 240 Query: 241 QRSEWDAAKYLASGRLKEVMPGYALPSANLYVYYLSRRNLPAKVRSFVDFLVAEFKGP 298 RSEWD AKYL SGRL+ V+P YALPSA+L+VYY SR+N A+ R+ +DFL P Sbjct: 241 IRSEWDLAKYLESGRLRLVLPEYALPSADLFVYYPSRQNQSARARALIDFLAGRLGAP 298 >ref|YP_001862466.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC75420.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 318 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/295 (61%), Positives = 233/295 (78%) Query: 4 ETAPDLAFFVVLAKLGSLSGTARELGLTPPAVTKRLMMLEQRLGVRLVNRTTRRFSLTSE 63 ++A D FF++LAKL S+SG AR L LTPPA TKRL ++E+RLG RLVNRTTR SLT E Sbjct: 4 DSASDFEFFILLAKLKSMSGAARALDLTPPAATKRLGIIERRLGARLVNRTTRSVSLTPE 63 Query: 64 GESYLAQATQILDRIRDMEESVSSGRAAPKGLLRVNATPGFGRTRIAPLVSRFAHDHPDV 123 GE+YL ATQI+ ++R+MEE++S P+GLLR+NAT GFGRT IAPLVS FA P+V Sbjct: 64 GETYLRYATQIVGQVREMEEAISGAGRDPQGLLRINATLGFGRTTIAPLVSDFAKRFPNV 123 Query: 124 EVELQLTDRPISLVEEAYDLAIRFGELPDTRLSARKLMSNKRFLCASPAYLKKAGEPLTP 183 EV+ ++TDRP+ L+E A+D+AIRFGELPD+RLSAR++MSN+RFLCASP YL++ G P Sbjct: 124 EVQFEVTDRPVDLIEGAFDMAIRFGELPDSRLSARRIMSNRRFLCASPKYLERFGTPERV 183 Query: 184 EELHRHRCILHRQNDDVYGTWRLEKGKKIELVKVRGAVSSNDGDVVMNWALEGHGIVQRS 243 ++L +HRCI+HRQNDD YG WR IE +KV+GA+SSNDGD+V+ WAL+GHGI+ RS Sbjct: 184 DDLQQHRCIIHRQNDDAYGVWRYIVNDHIEAIKVKGALSSNDGDIVLRWALDGHGILIRS 243 Query: 244 EWDAAKYLASGRLKEVMPGYALPSANLYVYYLSRRNLPAKVRSFVDFLVAEFKGP 298 EWD AKY+ SGRLK V+P LPSA+L+VYY +RN A+ R+F+DFLV F+ P Sbjct: 244 EWDLAKYVQSGRLKLVLPNTVLPSADLFVYYPRQRNQTARARAFIDFLVDRFQAP 298 >ref|ZP_02886741.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT07768.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 320 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/295 (61%), Positives = 231/295 (78%) Query: 4 ETAPDLAFFVVLAKLGSLSGTARELGLTPPAVTKRLMMLEQRLGVRLVNRTTRRFSLTSE 63 + A D FF++LAKL SLSG AR L L+PPA TKRL ++EQRLGVRLVNRTTR SLT E Sbjct: 6 QPATDFEFFILLAKLRSLSGAARALDLSPPAATKRLGVIEQRLGVRLVNRTTRSVSLTPE 65 Query: 64 GESYLAQATQILDRIRDMEESVSSGRAAPKGLLRVNATPGFGRTRIAPLVSRFAHDHPDV 123 GE+YL A+QI+ ++R+MEE++S + P+GLLR+NAT GFGRT IAPLVS FA P V Sbjct: 66 GETYLRYASQIVGQVREMEEAISGAKRDPQGLLRINATLGFGRTTIAPLVSEFAKRFPAV 125 Query: 124 EVELQLTDRPISLVEEAYDLAIRFGELPDTRLSARKLMSNKRFLCASPAYLKKAGEPLTP 183 EV+ ++TDRP+ LVE A+D+AIRFGELPD+RLSAR++MSN+RFLCASP YL+K G P Sbjct: 126 EVQFEVTDRPVDLVEGAFDMAIRFGELPDSRLSARRIMSNRRFLCASPKYLEKYGTPERV 185 Query: 184 EELHRHRCILHRQNDDVYGTWRLEKGKKIELVKVRGAVSSNDGDVVMNWALEGHGIVQRS 243 ++L HRCI+HRQNDD YG WR IE +KV+GA+SSNDGD+V+ WAL+GHGI+ RS Sbjct: 186 DDLAEHRCIIHRQNDDAYGVWRYIVNDHIEAIKVKGALSSNDGDIVLRWALDGHGILIRS 245 Query: 244 EWDAAKYLASGRLKEVMPGYALPSANLYVYYLSRRNLPAKVRSFVDFLVAEFKGP 298 EWD AKY+ SGRL V+P LPSA+L+VYY ++N + R+F+DFLV+ F+ P Sbjct: 246 EWDLAKYVQSGRLNLVLPNTVLPSADLFVYYPRQKNQTVRARAFIDFLVSRFQAP 300