BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0062.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_587803.1| hypothetical protein Rmet_5675 [Cupriavidus met...   197   5e-49
ref|YP_726451.1| hypothetical protein H16_A1982 [Ralstonia eutro...   191   2e-47
ref|YP_294459.1| YeeE/YedE [Ralstonia eutropha JMP134] >gi|72117...   190   5e-47
ref|ZP_06839499.1| protein of unknown function DUF395 YeeE/YedE ...   189   8e-47
ref|YP_004688524.1| hypothetical protein CNE_BB1p10780 [Cupriavi...   188   3e-46

>ref|YP_587803.1| hypothetical protein Rmet_5675 [Cupriavidus metallidurans CH34]
 gb|ABF12534.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 145

 Score =  197 bits (501), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 122/143 (85%)

Query: 1   LINLVDFTPGLSLAGGLMIGGAIALLILFNGRIAGISGILGGLLGLPEKDVAWRAAFLIG 60
           LI+L +FTPGLSLAGG++IG A A+L+LFNGRIAGISGILGGLL LP +D+ WR AFLIG
Sbjct: 3   LIDLGNFTPGLSLAGGIVIGVAAAVLVLFNGRIAGISGILGGLLSLPRRDMTWRVAFLIG 62

Query: 61  MMLAPVIAIGGGVGIDIEIQSGWGEILTAGFLVGIGTRYAGGCTSGHGVCGISRGSLRSV 120
           ++ AP++A   G+    +IQ+ WGE+L AGFLVGIGTRYAGGCTSGHGVCGISRGS+RS+
Sbjct: 63  LIGAPILAALFGMPAKADIQASWGEVLVAGFLVGIGTRYAGGCTSGHGVCGISRGSIRSL 122

Query: 121 VATLTFMAAGFATVFVKLHLVAA 143
           VATLTFMAAGF TVFV  HL+ A
Sbjct: 123 VATLTFMAAGFLTVFVTHHLIGA 145


>ref|YP_726451.1| hypothetical protein H16_A1982 [Ralstonia eutropha H16]
 emb|CAJ93083.1| hypothetical membrane protein [Ralstonia eutropha H16]
          Length = 144

 Score =  191 bits (486), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/141 (71%), Positives = 116/141 (82%)

Query: 1   LINLVDFTPGLSLAGGLMIGGAIALLILFNGRIAGISGILGGLLGLPEKDVAWRAAFLIG 60
           LI+L +FTPGLSL GGL+IG A A+L+LFNGRIAGISGI GGLL LP KD+AWR  FL G
Sbjct: 2   LIDLANFTPGLSLVGGLIIGAAAAVLLLFNGRIAGISGIFGGLLSLPRKDMAWRLTFLAG 61

Query: 61  MMLAPVIAIGGGVGIDIEIQSGWGEILTAGFLVGIGTRYAGGCTSGHGVCGISRGSLRSV 120
           ++ APVIA   G     +IQ+ WGEIL AGFLVG+GTRYA GCTSGHGVCGISRGS+RS+
Sbjct: 62  LVGAPVIASLLGKPAIADIQASWGEILAAGFLVGLGTRYASGCTSGHGVCGISRGSIRSL 121

Query: 121 VATLTFMAAGFATVFVKLHLV 141
           VATLTFM AGF TVFV+ HL+
Sbjct: 122 VATLTFMVAGFLTVFVQRHLI 142


>ref|YP_294459.1| YeeE/YedE [Ralstonia eutropha JMP134]
 gb|AAZ59615.1| YeeE/YedE [Ralstonia eutropha JMP134]
          Length = 144

 Score =  190 bits (483), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/141 (71%), Positives = 118/141 (83%)

Query: 1   LINLVDFTPGLSLAGGLMIGGAIALLILFNGRIAGISGILGGLLGLPEKDVAWRAAFLIG 60
           LI+L +FTPG SLAGGL+IG A A+L+LFNGRIAGISGILGGLL LP  D+AWR AFL G
Sbjct: 2   LIDLANFTPGFSLAGGLVIGAAAAVLVLFNGRIAGISGILGGLLTLPRGDMAWRLAFLAG 61

Query: 61  MMLAPVIAIGGGVGIDIEIQSGWGEILTAGFLVGIGTRYAGGCTSGHGVCGISRGSLRSV 120
           ++ AP++A   G     +IQ+ WGEI+ AGFLVGIGTRYA GCTSGHGVCGISRGS+RS+
Sbjct: 62  LIGAPIVAGLVGKPAIADIQASWGEIMIAGFLVGIGTRYASGCTSGHGVCGISRGSIRSL 121

Query: 121 VATLTFMAAGFATVFVKLHLV 141
           VATLTFMAAGF TVFV+ HL+
Sbjct: 122 VATLTFMAAGFLTVFVQRHLI 142


>ref|ZP_06839499.1| protein of unknown function DUF395 YeeE/YedE [Burkholderia sp.
           Ch1-1]
 gb|EFG73040.1| protein of unknown function DUF395 YeeE/YedE [Burkholderia sp.
           Ch1-1]
          Length = 144

 Score =  189 bits (481), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 100/140 (71%), Positives = 116/140 (82%)

Query: 2   INLVDFTPGLSLAGGLMIGGAIALLILFNGRIAGISGILGGLLGLPEKDVAWRAAFLIGM 61
           I+L  FTPGLSL GGL+IG A A L+LFNGRIAGISGI+GGL+G P+KD  WR AFL G+
Sbjct: 3   IDLASFTPGLSLTGGLVIGAAAAALVLFNGRIAGISGIVGGLVGTPQKDAGWRVAFLAGL 62

Query: 62  MLAPVIAIGGGVGIDIEIQSGWGEILTAGFLVGIGTRYAGGCTSGHGVCGISRGSLRSVV 121
           + APV+A   G  I  +I++GWGEIL AGFLVGIGTRYAGGCTSGHGVCGISRGS+RSVV
Sbjct: 63  IGAPVLAGLLGSRIAPDIEAGWGEILVAGFLVGIGTRYAGGCTSGHGVCGISRGSIRSVV 122

Query: 122 ATLTFMAAGFATVFVKLHLV 141
           AT TFMA+GF TVF+  HL+
Sbjct: 123 ATATFMASGFLTVFISRHLL 142


>ref|YP_004688524.1| hypothetical protein CNE_BB1p10780 [Cupriavidus necator N-1]
 gb|AEI82486.1| hypothetical membrane protein [Cupriavidus necator N-1]
          Length = 144

 Score =  188 bits (477), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 115/141 (81%)

Query: 1   LINLVDFTPGLSLAGGLMIGGAIALLILFNGRIAGISGILGGLLGLPEKDVAWRAAFLIG 60
           LI+L +FTPGLSL GG +IG + A+L+LFNGRIAGISGI GGLL LP KD+AWR  FL G
Sbjct: 2   LIDLANFTPGLSLVGGFIIGVSAAVLLLFNGRIAGISGIFGGLLSLPRKDMAWRLTFLAG 61

Query: 61  MMLAPVIAIGGGVGIDIEIQSGWGEILTAGFLVGIGTRYAGGCTSGHGVCGISRGSLRSV 120
           ++ APVIA   G     +IQ+ WGEIL AGFLVG+GTRYA GCTSGHGVCGISRGS+RS+
Sbjct: 62  LVGAPVIASLLGKPAIADIQASWGEILAAGFLVGLGTRYASGCTSGHGVCGISRGSIRSL 121

Query: 121 VATLTFMAAGFATVFVKLHLV 141
           VATLTFM AGF TVFV+ HL+
Sbjct: 122 VATLTFMVAGFLTVFVQRHLI 142