BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0057.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775637.1| Fe3+ ABC transporter periplasmic protein [He... 611 e-173 ref|YP_004680322.1| BITfamily ABC transporter permease [Cupriavi... 574 e-162 ref|YP_728282.1| ABC transporter periplasmic protein [Ralstonia ... 573 e-161 ref|YP_299714.1| extracellular solute-binding protein [Ralstonia... 569 e-160 gb|AEG71758.1| solute-binding periplasmic protein (pbp) [Ralston... 568 e-160 >ref|YP_003775637.1| Fe3+ ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63729.1| ABC-type Fe3+ transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 371 Score = 611 bits (1576), Expect = e-173, Method: Compositional matrix adjust. Identities = 295/349 (84%), Positives = 321/349 (91%), Gaps = 7/349 (2%) Query: 11 HHKKATMKPTTILKLLASVLGAGALLSA--HAATTLTVYTALEADQIKAYQAEFEKSNPD 68 HH+K T + L ASV+GAG L SA HAATTLTVYTALEADQIKAYQA F K+NPD Sbjct: 28 HHEK-----TKLFSLFASVIGAGMLFSAQAHAATTLTVYTALEADQIKAYQAAFHKANPD 82 Query: 69 IEIKWVRDSTGIVTAKLLAEKANPKADVIWGLAASSLAILDKEGMLTPYAPKNLPAIEAK 128 IEIKWVRDSTGIVTAKLLAEKANP+ADVIWGLAA+SLA+LDKEGML PYAP+ L AI+AK Sbjct: 83 IEIKWVRDSTGIVTAKLLAEKANPQADVIWGLAATSLALLDKEGMLMPYAPQGLSAIDAK 142 Query: 129 YRSPANPPAWVGMDVWGSAICFNTVEAQKQGLPKPTSWADLTKPIYAGKIVMPHPASSGT 188 YRS ANPPAWVGMDVW SAICFNTVEAQKQGLPKPTSWADLTKP+YAGKIVMP+PASSGT Sbjct: 143 YRSAANPPAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKIVMPNPASSGT 202 Query: 189 GYLDVTAWIQMMGEDKAWAYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKT 248 GYLDV+AW+QMMGEDK WAYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKT Sbjct: 203 GYLDVSAWLQMMGEDKGWAYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKT 262 Query: 249 KKEGAPIDIILPSEGLGWDLEATAIVKGTRNLDAAKRLADFSASKDAMMQYEKNFAVLAV 308 KKEGAPID+ILPSEGLGWD+EATAIVKG+++L+AAK+LADFSASK+AM YEKNFAV+A+ Sbjct: 263 KKEGAPIDVILPSEGLGWDIEATAIVKGSKHLEAAKKLADFSASKEAMALYEKNFAVVAI 322 Query: 309 PGIAKPDPLLPADYEKRLTKNDFVWTSSNRDRILTEWSKRYESKAEKKQ 357 PG+AKPD LL ADYEKRL KNDF W S+NRDRILTEWSKRYESK+EKKQ Sbjct: 323 PGVAKPDELLSADYEKRLIKNDFTWASTNRDRILTEWSKRYESKSEKKQ 371 >ref|YP_004680322.1| BITfamily ABC transporter permease [Cupriavidus necator N-1] gb|AEI79090.1| ABC transport system permease protein BITfamily [Cupriavidus necator N-1] Length = 342 Score = 574 bits (1479), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/320 (85%), Positives = 294/320 (91%) Query: 37 SAHAATTLTVYTALEADQIKAYQAEFEKSNPDIEIKWVRDSTGIVTAKLLAEKANPKADV 96 +A AAT LTVYTALEADQI AY+A FEK +PDIEIKWVRDSTGIVTAKLLAEKA P+AD Sbjct: 23 NASAATVLTVYTALEADQIAAYKAAFEKVHPDIEIKWVRDSTGIVTAKLLAEKAAPRADA 82 Query: 97 IWGLAASSLAILDKEGMLTPYAPKNLPAIEAKYRSPANPPAWVGMDVWGSAICFNTVEAQ 156 +WGLA SSLAILDKEGML PYAPKNL AI+AKYRSPANPPAWVGMDVWG+AICFNTVEAQ Sbjct: 83 VWGLAGSSLAILDKEGMLDPYAPKNLAAIDAKYRSPANPPAWVGMDVWGAAICFNTVEAQ 142 Query: 157 KQGLPKPTSWADLTKPIYAGKIVMPHPASSGTGYLDVTAWIQMMGEDKAWAYMDALHKNI 216 KQGLPKPTSWADLTKPIYAGK+VMPHPASSGTG+LDV+AW+QMMGE K W YMD LHKNI Sbjct: 143 KQGLPKPTSWADLTKPIYAGKVVMPHPASSGTGFLDVSAWLQMMGEQKGWQYMDGLHKNI 202 Query: 217 GQYTHSGSKPCKQAATGEFPIGIAFEYRAVKTKKEGAPIDIILPSEGLGWDLEATAIVKG 276 G YTHSGSKPCK AA GEFPIGIAFEYRA+K+KKEGAPIDI+LPSEGLGWD+EATAIVKG Sbjct: 203 GLYTHSGSKPCKMAAQGEFPIGIAFEYRAMKSKKEGAPIDIVLPSEGLGWDIEATAIVKG 262 Query: 277 TRNLDAAKRLADFSASKDAMMQYEKNFAVLAVPGIAKPDPLLPADYEKRLTKNDFVWTSS 336 ++NLDAA++LADFSAS++AM YEKNFAVLAVPGIAKPD LLPADYEKRL KNDF W S Sbjct: 263 SKNLDAARKLADFSASREAMALYEKNFAVLAVPGIAKPDALLPADYEKRLIKNDFRWASD 322 Query: 337 NRDRILTEWSKRYESKAEKK 356 NRDRIL EWSKRYE KAEKK Sbjct: 323 NRDRILAEWSKRYEGKAEKK 342 >ref|YP_728282.1| ABC transporter periplasmic protein [Ralstonia eutropha H16] emb|CAJ94917.1| ABC-type transporter, periplasmic component: BITfamily [Ralstonia eutropha H16] Length = 342 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 272/320 (85%), Positives = 294/320 (91%) Query: 37 SAHAATTLTVYTALEADQIKAYQAEFEKSNPDIEIKWVRDSTGIVTAKLLAEKANPKADV 96 +A AAT LTVYTALEADQI AY++ FEK +PDIEIKWVRDSTGIVTAKLLAE+A P+AD Sbjct: 23 NASAATVLTVYTALEADQIAAYKSAFEKVHPDIEIKWVRDSTGIVTAKLLAERAAPRADA 82 Query: 97 IWGLAASSLAILDKEGMLTPYAPKNLPAIEAKYRSPANPPAWVGMDVWGSAICFNTVEAQ 156 +WGLA SSLAILDKEGML PYAPKNL AI+AKYRSPANPPAWVGMDVWG+AICFNTVEAQ Sbjct: 83 VWGLAGSSLAILDKEGMLDPYAPKNLAAIDAKYRSPANPPAWVGMDVWGAAICFNTVEAQ 142 Query: 157 KQGLPKPTSWADLTKPIYAGKIVMPHPASSGTGYLDVTAWIQMMGEDKAWAYMDALHKNI 216 KQGLPKP SWADLTKPIYAGK+VMPHPASSGTG+LDV+AW+QMMGE K W YMDALHKNI Sbjct: 143 KQGLPKPASWADLTKPIYAGKVVMPHPASSGTGFLDVSAWLQMMGEQKGWQYMDALHKNI 202 Query: 217 GQYTHSGSKPCKQAATGEFPIGIAFEYRAVKTKKEGAPIDIILPSEGLGWDLEATAIVKG 276 G YTHSGSKPCK AA GEFPIGIAFEYRA+K+KKEGAPIDI+LPSEGLGWD+EATAIVKG Sbjct: 203 GLYTHSGSKPCKMAAQGEFPIGIAFEYRAMKSKKEGAPIDIVLPSEGLGWDIEATAIVKG 262 Query: 277 TRNLDAAKRLADFSASKDAMMQYEKNFAVLAVPGIAKPDPLLPADYEKRLTKNDFVWTSS 336 TRNLDAA++LADFSAS++AM YEKNFAVLAVPGIA+PD LLPADYEKRL KNDF W S Sbjct: 263 TRNLDAARKLADFSASREAMALYEKNFAVLAVPGIARPDALLPADYEKRLIKNDFRWASD 322 Query: 337 NRDRILTEWSKRYESKAEKK 356 NRDRIL EWSKRYE KAEKK Sbjct: 323 NRDRILAEWSKRYEGKAEKK 342 >ref|YP_299714.1| extracellular solute-binding protein [Ralstonia eutropha JMP134] gb|AAZ64870.1| extracellular solute-binding protein, family 1 [Ralstonia eutropha JMP134] Length = 340 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 269/315 (85%), Positives = 293/315 (93%) Query: 42 TTLTVYTALEADQIKAYQAEFEKSNPDIEIKWVRDSTGIVTAKLLAEKANPKADVIWGLA 101 T LTVYTALEADQI AY+A FEK NPDIEIKWVRDSTGIVTAKLLAEKA P+AD +WGLA Sbjct: 26 TVLTVYTALEADQIAAYKAAFEKVNPDIEIKWVRDSTGIVTAKLLAEKAAPRADAVWGLA 85 Query: 102 ASSLAILDKEGMLTPYAPKNLPAIEAKYRSPANPPAWVGMDVWGSAICFNTVEAQKQGLP 161 SSLAILDKEGML PYAPKNL AI+A+YRS ANPPAWVGMDVWG+AICFNTVEAQKQGLP Sbjct: 86 GSSLAILDKEGMLQPYAPKNLAAIDAQYRSAANPPAWVGMDVWGAAICFNTVEAQKQGLP 145 Query: 162 KPTSWADLTKPIYAGKIVMPHPASSGTGYLDVTAWIQMMGEDKAWAYMDALHKNIGQYTH 221 KPTSWADLTKP+YAGKIVMPHPASSGTG+LDV+AW+QMMG+ K W YMDALHKNIG YTH Sbjct: 146 KPTSWADLTKPVYAGKIVMPHPASSGTGFLDVSAWLQMMGDKKGWDYMDALHKNIGLYTH 205 Query: 222 SGSKPCKQAATGEFPIGIAFEYRAVKTKKEGAPIDIILPSEGLGWDLEATAIVKGTRNLD 281 SGSKPCK AA GEFPIGIAFEYRA+K+KKEGAPIDI+LPSEGLGWD+EATAI+KGT+NL+ Sbjct: 206 SGSKPCKMAAQGEFPIGIAFEYRAMKSKKEGAPIDIVLPSEGLGWDIEATAIIKGTKNLE 265 Query: 282 AAKRLADFSASKDAMMQYEKNFAVLAVPGIAKPDPLLPADYEKRLTKNDFVWTSSNRDRI 341 AA++LADFSAS++AM YEKNFAVLAVPG+AKPD LLPADYEKRL KNDFVW S+NRDRI Sbjct: 266 AARKLADFSASREAMGLYEKNFAVLAVPGVAKPDALLPADYEKRLIKNDFVWASANRDRI 325 Query: 342 LTEWSKRYESKAEKK 356 LTEWSKRYE KAEKK Sbjct: 326 LTEWSKRYEGKAEKK 340 >gb|AEG71758.1| solute-binding periplasmic protein (pbp) [Ralstonia solanacearum Po82] Length = 357 Score = 568 bits (1464), Expect = e-160, Method: Compositional matrix adjust. Identities = 265/320 (82%), Positives = 295/320 (92%) Query: 37 SAHAATTLTVYTALEADQIKAYQAEFEKSNPDIEIKWVRDSTGIVTAKLLAEKANPKADV 96 SA AATTLTVYTALEADQ+ AY+A FEK+NPDIEIKWVRDSTGIVTAKLLAEKANP ADV Sbjct: 38 SAQAATTLTVYTALEADQVAAYKAAFEKANPDIEIKWVRDSTGIVTAKLLAEKANPHADV 97 Query: 97 IWGLAASSLAILDKEGMLTPYAPKNLPAIEAKYRSPANPPAWVGMDVWGSAICFNTVEAQ 156 +WGLAASSLAILDKEGML PYAP NL I+AKYRS ANPPAWVGMDVWG+ ICFNTVEAQ Sbjct: 98 VWGLAASSLAILDKEGMLVPYAPANLSNIDAKYRSAANPPAWVGMDVWGATICFNTVEAQ 157 Query: 157 KQGLPKPTSWADLTKPIYAGKIVMPHPASSGTGYLDVTAWIQMMGEDKAWAYMDALHKNI 216 KQ LPKPTSWADL KP+YAGKIVMP+PASSGTGYLDV+AW+QM+GE K WAYMDALH+NI Sbjct: 158 KQNLPKPTSWADLAKPVYAGKIVMPNPASSGTGYLDVSAWLQMLGEQKGWAYMDALHQNI 217 Query: 217 GQYTHSGSKPCKQAATGEFPIGIAFEYRAVKTKKEGAPIDIILPSEGLGWDLEATAIVKG 276 GQYTHSGSKPCK AA GE+PIG++FEYRAVK+KKEGAPID++LPSEGLGWD+EATAIVKG Sbjct: 218 GQYTHSGSKPCKMAAQGEYPIGVSFEYRAVKSKKEGAPIDLVLPSEGLGWDIEATAIVKG 277 Query: 277 TRNLDAAKRLADFSASKDAMMQYEKNFAVLAVPGIAKPDPLLPADYEKRLTKNDFVWTSS 336 T+NL+AA++LADFSAS AM YEKNFAV+A+PG+AKPDPLLPADYEKRL KNDF W S+ Sbjct: 278 TKNLEAARKLADFSASPAAMALYEKNFAVVAMPGVAKPDPLLPADYEKRLIKNDFAWASA 337 Query: 337 NRDRILTEWSKRYESKAEKK 356 NRDRIL EW+KRY+ K+EKK Sbjct: 338 NRDRILAEWTKRYDGKSEKK 357