BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0056.p (390 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775636.1| secreted glycine/D-amino acid oxidase [Herba... 615 e-174 ref|YP_001892992.1| FAD dependent oxidoreductase TIGR03364 [Rals... 475 e-132 ref|YP_004351144.1| oxidoreductase [Pseudomonas brassicacearum s... 474 e-131 ref|ZP_07677511.1| FAD dependent oxidoreductase [Ralstonia sp. 5... 472 e-131 ref|YP_002875297.1| putative oxidoreductase [Pseudomonas fluores... 467 e-129 >ref|YP_003775636.1| secreted glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] gb|ADJ63728.1| secreted glycine/D-amino acid oxidase (deaminating) protein [Herbaspirillum seropedicae SmR1] Length = 400 Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust. Identities = 292/381 (76%), Positives = 333/381 (87%) Query: 5 NKDHIDVAVVGAGILGLAHAFAAVKRGLRVVVFERSSTPIGASIRNFGMGLVTGQPPGVM 64 + H D+AVVG+GILGLAHA+AAVKRGL+V VFER+ TP+GAS+RNFGMGLVTGQPPG+M Sbjct: 9 DPQHFDLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLVTGQPPGIM 68 Query: 65 LGLAKQSRALWLHLAQRANFSAREAGTLLFARTAAEHAVLEEFMIVRARQHGYDASLLEG 124 L LA++SRA+WLHLA RA+FSAREAGTLLFAR+ AEH VL+EFM+VRARQ+ Y ASLLEG Sbjct: 69 LDLARESRAIWLHLAARAHFSAREAGTLLFARSEAEHDVLQEFMMVRARQYDYRASLLEG 128 Query: 125 AQLDALYGGRFRHHRSALHGTQDLQLYSREAVPALVCYLQSQGVQFHFNTLVREARDGHL 184 +L+ LY GRFRHHRS LHGT+DLQLYSREA+PALV YL SQGV F FNTLV A DG L Sbjct: 129 DKLNTLYNGRFRHHRSVLHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLVHGAGDGRL 188 Query: 185 STTAGEFRAERTIVCSGHDYQTLFADKLGEMNLKVCRLQMLRAAPQERLPLTHAVLTGLS 244 STTAGEFRAER +VCSGHDY TLFAD+L MNLK CRLQMLR +E LPLTHAVLTGLS Sbjct: 189 STTAGEFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLKSEETLPLTHAVLTGLS 248 Query: 245 CTHYGAFSDLPSAAGVHAEIEAQYPVLNRHGIHLLVSPTPYQELIIGDSHYYGVDAPPFN 304 CTHYGAFSDLP+A VHAEIEA P+LN+HGIHLLVSPTPYQELI+GDSH+YG DAPPFN Sbjct: 249 CTHYGAFSDLPTARAVHAEIEANTPLLNKHGIHLLVSPTPYQELIVGDSHHYGTDAPPFN 308 Query: 305 NEEIDQLMIGLAEETLGVKLNVLERWQGVYGSKGPGPFSATPIDGKTTVVLMHTGIGMSV 364 +EEID+L++GL E TL ++ V+ERWQGVYGSKGPGPFSA ID +T+VVLMHTGIGMSV Sbjct: 309 SEEIDELLLGLVEHTLATRVKVIERWQGVYGSKGPGPFSALAIDAQTSVVLMHTGIGMSV 368 Query: 365 GLALGERVIGALLDGAKLPEP 385 GL LGERV+ ALL+GA+LP P Sbjct: 369 GLGLGERVVKALLEGAELPSP 389 >ref|YP_001892992.1| FAD dependent oxidoreductase TIGR03364 [Ralstonia pickettii 12J] ref|YP_002984518.1| FAD dependent oxidoreductase [Ralstonia pickettii 12D] gb|ACD29565.1| FAD dependent oxidoreductase TIGR03364 [Ralstonia pickettii 12J] gb|ACS65846.1| FAD dependent oxidoreductase TIGR03364 [Ralstonia pickettii 12D] Length = 407 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 241/379 (63%), Positives = 280/379 (73%), Gaps = 4/379 (1%) Query: 10 DVAVVGAGILGLAHAFAAVKRGLRVVVFERSSTPIGASIRNFGMGLVTGQPPGVMLGLAK 69 DVAVVGAGILGLAHA AAVKRGLRV VFERS +GASIRNFG LVTGQPPG+ML LA+ Sbjct: 16 DVAVVGAGILGLAHAAAAVKRGLRVTVFERSDIAVGASIRNFGQMLVTGQPPGIMLDLAR 75 Query: 70 QSRALWLHLAQRANFSAREAGTLLFARTAAEHAVLEEFMIVRARQHGYDASLLEGAQLDA 129 +SRAL+L A +A AR G LLFAR AAE AVL+EFM RA GY+ LL A L Sbjct: 76 ESRALYLDWADKAGVFARANGALLFARNAAEEAVLDEFMATRAPAFGYNVKLLRSADLAD 135 Query: 130 LYGGRFRHHRSALHGTQDLQLYSREAVPALVCYLQSQGVQFHFNTLVREARDGHLSTTAG 189 LY GRF HR+AL G DLQLYSREA+PAL +L +QGV+FHF TLVR G L TTAG Sbjct: 136 LYDGRFMRHRAALQGFDDLQLYSREAIPALASWLATQGVRFHFGTLVRHVEGGRLETTAG 195 Query: 190 EFRAERTIVCSGHDYQTLFADKLGEMNLKVCRLQMLRAAPQERLPLTHAVLTGLSCTHYG 249 A+R +VCSGHDYQTL AD+L + +VCRLQMLR P++ L HAVLTGLSCTHYG Sbjct: 196 VCNAQRVVVCSGHDYQTLCADQLRALQPQVCRLQMLRVTPEDGFRLEHAVLTGLSCTHYG 255 Query: 250 AFSDLPSAAGVHAEIEAQYPVLNRHGIHLLVSPTPYQELIIGDSHYYGVDAPPFNNEEID 309 AF+DLP+A + +IE Q P L RHGIHLLVSPTPY + I+GDSH YG DA PFN E +D Sbjct: 256 AFADLPTAQALAMQIEHQRPELARHGIHLLVSPTPYGDWIVGDSHDYGQDARPFNAESVD 315 Query: 310 QLMIGLAEETLGVKLNVLERWQGVYGSK----GPGPFSATPIDGKTTVVLMHTGIGMSVG 365 +M+ LA +T G KL V+ERWQGVYG+K G G FS T +D +TTV LMH+GIGMSVG Sbjct: 316 NIMLDLARDTFGAKLRVVERWQGVYGAKCRVPGSGAFSITRVDDRTTVALMHSGIGMSVG 375 Query: 366 LALGERVIGALLDGAKLPE 384 AL R + AL+DG +LP+ Sbjct: 376 PALAHRHMDALVDGTELPQ 394 >ref|YP_004351144.1| oxidoreductase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA66140.1| Putative oxidoreductase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 385 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 237/383 (61%), Positives = 277/383 (72%) Query: 5 NKDHIDVAVVGAGILGLAHAFAAVKRGLRVVVFERSSTPIGASIRNFGMGLVTGQPPGVM 64 ++ D+ +VGAG+LGLAHA+A KRGL+V VFERS TP+GASIRNFG LVTGQ PGVM Sbjct: 2 SQHDCDLLIVGAGMLGLAHAWAGAKRGLKVRVFERSHTPLGASIRNFGQALVTGQAPGVM 61 Query: 65 LGLAKQSRALWLHLAQRANFSAREAGTLLFARTAAEHAVLEEFMIVRARQHGYDASLLEG 124 L LA+QSR LW L Q A ++ G+LLFAR+ AE A+LE F RAR+ GY LL G Sbjct: 62 LDLARQSRGLWAELGQAAGLQLKQQGSLLFARSEAEEALLEAFCAGRAREQGYRVELLRG 121 Query: 125 AQLDALYGGRFRHHRSALHGTQDLQLYSREAVPALVCYLQSQGVQFHFNTLVREARDGHL 184 A L+ LYGGRF HHR+ALHG D QLYSREA+P +V YL+ GVQFHF+TLVR+ G Sbjct: 122 AALNGLYGGRFAHHRAALHGLDDQQLYSREALPQIVDYLRGLGVQFHFSTLVRDVEPGSA 181 Query: 185 STTAGEFRAERTIVCSGHDYQTLFADKLGEMNLKVCRLQMLRAAPQERLPLTHAVLTGLS 244 T+AG F A +VCSGHDYQTL A+ L + VCRLQMLRA Q+ L L HAVLTGLS Sbjct: 182 LTSAGSFSARHIVVCSGHDYQTLLAEPLAALQPSVCRLQMLRARLQQPLDLQHAVLTGLS 241 Query: 245 CTHYGAFSDLPSAAGVHAEIEAQYPVLNRHGIHLLVSPTPYQELIIGDSHYYGVDAPPFN 304 C HYGAF+DLP A + A+I + P L HGIHLLVSPTP+ ELIIGDSH YG DA PFN Sbjct: 242 CVHYGAFADLPEAEAIRAQIRREQPELETHGIHLLVSPTPHGELIIGDSHDYGSDASPFN 301 Query: 305 NEEIDQLMIGLAEETLGVKLNVLERWQGVYGSKGPGPFSATPIDGKTTVVLMHTGIGMSV 364 E +D LM+ LAE TLG KL VLERWQGVYGS+GPGPFS + VLMHTG+GMSV Sbjct: 302 AEAVDDLMLALAEHTLGGKLQVLERWQGVYGSRGPGPFSVVQAGAGVSAVLMHTGLGMSV 361 Query: 365 GLALGERVIGALLDGAKLPEPAV 387 GL LGER + ALL + P+ V Sbjct: 362 GLGLGERSLAALLGEEEWPQACV 384 >ref|ZP_07677511.1| FAD dependent oxidoreductase [Ralstonia sp. 5_7_47FAA] gb|EFP64244.1| FAD dependent oxidoreductase [Ralstonia sp. 5_7_47FAA] Length = 407 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 238/379 (62%), Positives = 278/379 (73%), Gaps = 4/379 (1%) Query: 10 DVAVVGAGILGLAHAFAAVKRGLRVVVFERSSTPIGASIRNFGMGLVTGQPPGVMLGLAK 69 DVA+VGAGILGLAHA AAVKRGLRV VFERS +GASIRNFG LVTGQPPG+ML LA+ Sbjct: 16 DVAIVGAGILGLAHAAAAVKRGLRVTVFERSDIAVGASIRNFGQMLVTGQPPGIMLDLAR 75 Query: 70 QSRALWLHLAQRANFSAREAGTLLFARTAAEHAVLEEFMIVRARQHGYDASLLEGAQLDA 129 +SRAL+L A +A AR G LLFAR AAE VL+EFM RA GY+ LL A L Sbjct: 76 ESRALYLDWADKAGIFARANGALLFARNAAEEDVLDEFMATRAPAFGYNVKLLRSADLAN 135 Query: 130 LYGGRFRHHRSALHGTQDLQLYSREAVPALVCYLQSQGVQFHFNTLVREARDGHLSTTAG 189 LY GRF HR+AL G DLQLYSREA+PAL +L QGV+FHF TLVR G L TTAG Sbjct: 136 LYDGRFLRHRAALQGVDDLQLYSREAIPALASWLAKQGVRFHFGTLVRHVEGGRLETTAG 195 Query: 190 EFRAERTIVCSGHDYQTLFADKLGEMNLKVCRLQMLRAAPQERLPLTHAVLTGLSCTHYG 249 A+R +VCSGHDYQTL AD+L + +VCRLQMLR P++ L HAVLTGLSCTHYG Sbjct: 196 VCNAQRVVVCSGHDYQTLCADQLRTLQPQVCRLQMLRVTPEDGFRLEHAVLTGLSCTHYG 255 Query: 250 AFSDLPSAAGVHAEIEAQYPVLNRHGIHLLVSPTPYQELIIGDSHYYGVDAPPFNNEEID 309 AF+DLP+A + +IE Q P L RHGIHLLVSPTPY + I+GDSH YG DA PFN E +D Sbjct: 256 AFADLPTAQALAMQIEHQRPELARHGIHLLVSPTPYGDWIVGDSHDYGQDARPFNAESVD 315 Query: 310 QLMIGLAEETLGVKLNVLERWQGVYGSK----GPGPFSATPIDGKTTVVLMHTGIGMSVG 365 +++ LA +T G KL V+ERWQGVYG+K G G FS T +D +TTV LMH+GIGMSVG Sbjct: 316 NILLDLARDTFGAKLRVVERWQGVYGAKCRVPGSGAFSITRVDDRTTVALMHSGIGMSVG 375 Query: 366 LALGERVIGALLDGAKLPE 384 AL R + AL+DG +LP+ Sbjct: 376 PALAHRHMDALVDGTELPQ 394 >ref|YP_002875297.1| putative oxidoreductase [Pseudomonas fluorescens SBW25] emb|CAY53222.1| putative oxidoreductase [Pseudomonas fluorescens SBW25] Length = 377 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 229/374 (61%), Positives = 279/374 (74%), Gaps = 1/374 (0%) Query: 8 HIDVAVVGAGILGLAHAFAAVKRGLRVVVFERSSTPIGASIRNFGMGLVTGQPPGVMLGL 67 H D+ ++GAGILGL+HA+AA KRGL+V VFERS+TP+GAS+RNFG LVTGQPPG ML L Sbjct: 4 HSDLLIIGAGILGLSHAYAAAKRGLKVKVFERSATPLGASVRNFGQALVTGQPPGPMLDL 63 Query: 68 AKQSRALWLHLAQRANFSAREAGTLLFARTAAEHAVLEEFMIVRARQHGYDASLLEGAQL 127 A++SRA+W A+RA + G LFART AE +LE F RA++HGY+ LL+GA + Sbjct: 64 ARESRAIWGQWAERAGLQLKRNGAYLFARTEAEEHLLEAFCAGRAQEHGYNVDLLQGAAM 123 Query: 128 DALYGGRFRHHRSALHGTQDLQLYSREAVPALVCYL-QSQGVQFHFNTLVREARDGHLST 186 LYGG+FRHHR+ALHG D QLYSREA+PAL+ YL Q+ V+F+F+TLVR+ G L + Sbjct: 124 KDLYGGQFRHHRAALHGKDDQQLYSREAIPALINYLAQALNVEFYFSTLVRDVEPGQLHS 183 Query: 187 TAGEFRAERTIVCSGHDYQTLFADKLGEMNLKVCRLQMLRAAPQERLPLTHAVLTGLSCT 246 TAG FR E+ IVCSGHDYQTL A+ + E+N +CRLQMLRA P L L HA+LTGLSC Sbjct: 184 TAGSFRGEQIIVCSGHDYQTLLAEAIAELNPSICRLQMLRARPAVNLNLQHALLTGLSCV 243 Query: 247 HYGAFSDLPSAAGVHAEIEAQYPVLNRHGIHLLVSPTPYQELIIGDSHYYGVDAPPFNNE 306 HYGAF+DLP AA V A+I + P L+ HGIHLL+SPTP+ ELIIGDSH YG DA PFN E Sbjct: 244 HYGAFADLPEAAPVQAQILREAPHLHEHGIHLLISPTPHGELIIGDSHDYGSDASPFNAE 303 Query: 307 EIDQLMIGLAEETLGVKLNVLERWQGVYGSKGPGPFSATPIDGKTTVVLMHTGIGMSVGL 366 +ID MI LAE+TLG K+ V+ERWQGVYGS+GP PFS + LMHTG+GMSVG Sbjct: 304 QIDDWMIELAEQTLGCKIQVVERWQGVYGSRGPAPFSFLRAAPGISAALMHTGVGMSVGP 363 Query: 367 ALGERVIGALLDGA 380 A+ ER I L A Sbjct: 364 AMAERNITTLWGAA 377