BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0055.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775663.1| LysR family transcription regulator protein ... 534 e-150 ref|YP_004752184.1| LysR family transcriptional regulator [Colli... 498 e-139 ref|YP_283703.1| LysR family transcriptional regulator [Dechloro... 276 2e-72 ref|YP_260937.1| LysR family transcriptional regulator [Pseudomo... 243 2e-62 ref|YP_004156588.1| LysR family transcriptional regulator [Vario... 228 1e-57 >ref|YP_003775663.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63755.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust. Identities = 266/313 (84%), Positives = 286/313 (91%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQVRQLEEELEAQLLHRSAQGVIATDA 60 MELRQLRYFVAIVDHGSLSRAAR LHIAQPALTQQ+RQLE+EL AQLLHRSAQGVIATDA Sbjct: 1 MELRQLRYFVAIVDHGSLSRAARALHIAQPALTQQIRQLEDELAAQLLHRSAQGVIATDA 60 Query: 61 GKTFYEHAQAILKQVIDAKSAVAQSNDKPSGTVALGIPQSVSGALALPLLTAIRATYPEI 120 GK FYEHA AILKQV DAK AV QS DKPSGTVALGIPQSVS ALALPLL A+R+TYPEI Sbjct: 61 GKVFYEHALAILKQVQDAKQAVGQSADKPSGTVALGIPQSVSNALALPLLNAVRSTYPEI 120 Query: 121 TLLLTEELTGNLIVQLKSGRINLAVLFDDGQLSPFASTPMVEEEMMYITRADSQYGAGKK 180 TL LTEELTGNLI QLKSGRINLAVLFDDGQLS FA+TPM+EEEMMYITRA SQYG + Sbjct: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRAKSQYGVAGR 180 Query: 181 KSVTLAQAIKAPLILPGLQHGVRPRIENIVRSQGMSLANVIEINSVAILKSAILADIGAT 240 KSV LA+AI+APLILPGL HGVRPRIEN+VRSQGMSL NVIEINSVAILKSAILADIGAT Sbjct: 181 KSVPLARAIQAPLILPGLAHGVRPRIENLVRSQGMSLDNVIEINSVAILKSAILADIGAT 240 Query: 241 ILPVAPLLSEIERGDMVALPISGERMARTLALCASKNIPLTNAAAAVERLVLDVTDDLCR 300 ILPVAPLL++IERG+MVA I+GER++RTLALCAS+NIPLT AAAAVE+LVLDVTD+LCR Sbjct: 241 ILPVAPLLADIERGEMVAHRIAGERISRTLALCASRNIPLTTAAAAVEQLVLDVTDELCR 300 Query: 301 KGKWLHTEGLARE 313 G+W HTE L RE Sbjct: 301 SGRWGHTELLERE 313 >ref|YP_004752184.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61361.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 315 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/315 (77%), Positives = 283/315 (89%), Gaps = 4/315 (1%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQVRQLEEELEAQLLHRSAQGVIATDA 60 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQV+QLE+EL AQLLHRSAQGVIATDA Sbjct: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQVKQLEDELAAQLLHRSAQGVIATDA 60 Query: 61 GKTFYEHAQAILKQVIDAKSAVAQSNDKPSGTVALGIPQSVSGALALPLLTAIRATYPEI 120 GK FYEHAQAILKQV DA+SAVAQS DKP+GTVALGIPQS SG LALPLLTA+RA YP+I Sbjct: 61 GKIFYEHAQAILKQVTDARSAVAQSTDKPAGTVALGIPQSASGILALPLLTAMRARYPDI 120 Query: 121 TLLLTEELTGNLIVQLKSGRINLAVLFDDGQLSPFASTPMVEEEMMYITRADSQYGAGKK 180 +L LTEELTGNLI QLK+GRINLAVLF+DGQL+ FA+TP+VEEEMM+ITR+ S+Y A + Sbjct: 121 SLQLTEELTGNLIEQLKTGRINLAVLFNDGQLTAFATTPLVEEEMMFITRSGSRY-ASAR 179 Query: 181 KSVTLAQAIKAPLILPGLQHGVRPRIENIVRSQGMSLANVIEINSVAILKSAILADIGAT 240 +S+T A+A+KA LILPG+QHGVRPRIE++ R+ G++L NV+EI+SV I+KSAILADIGAT Sbjct: 180 RSITFARAVKARLILPGMQHGVRPRIESVARAAGLTLDNVVEISSVTIMKSAILADIGAT 239 Query: 241 ILPVAPLLSEIERGDMVALP---ISGERMARTLALCASKNIPLTNAAAAVERLVLDVTDD 297 ILPVAPLL EI+RG+M A ISGE+++RTL LCASKNIPLT AAAAVERLVL+VTD+ Sbjct: 240 ILPVAPLLPEIKRGEMSAYSISAISGEKLSRTLTLCASKNIPLTTAAAAVERLVLEVTDE 299 Query: 298 LCRKGKWLHTEGLAR 312 LCR G+WLH + LAR Sbjct: 300 LCRSGQWLHAKILAR 314 >ref|YP_283703.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB] gb|AAZ45233.1| transcriptional regulator, LysR family [Dechloromonas aromatica RCB] Length = 319 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 149/314 (47%), Positives = 207/314 (65%), Gaps = 3/314 (0%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQVRQLEEELEAQLLHRSAQGVIATDA 60 MELRQLRYF+AI +HGS S+AA +H+AQ AL+ Q+ QLE+EL L HR +GV T A Sbjct: 1 MELRQLRYFLAIAEHGSFSKAASSVHVAQSALSHQLAQLEDELGQPLFHRLPRGVALTPA 60 Query: 61 GKTFYEHAQAILKQVIDAKSAVAQSNDKPSGTVALGIPQSVSGALALPLLTAIRATYPEI 120 G+ F+ HA +IL+QV DA+ +V Q+ + G V GIP SVS ALALPLL A+RA P + Sbjct: 61 GRAFHPHALSILRQVEDARHSVTQAEGETVGKVIFGIPHSVSQALALPLLKAVRAALPRV 120 Query: 121 TLLLTEELTGNLIVQLKSGRINLAVLFDDGQLSPFASTPMVEEEMMYITRADSQYGAGKK 180 L LTEELTGNLI QL++G I+LAVLFDDGQL F P++EE ++ I+ A++ Sbjct: 121 ELELTEELTGNLIPQLRTGLIHLAVLFDDGQLDEFRCHPLLEEALLLISPAEAP--DAPS 178 Query: 181 KSVTLAQAIKAPLILPGLQHGVRPRIENIVRSQGMSLANVI-EINSVAILKSAILADIGA 239 ++L A++ PLILP HGVRP +E R G + NV+ +I+S++IL++++LA +G Sbjct: 179 GPISLRDALRLPLILPAWPHGVRPIVEAAARQAGRAAPNVVADISSISILRTSLLAGLGH 238 Query: 240 TILPVAPLLSEIERGDMVALPISGERMARTLALCASKNIPLTNAAAAVERLVLDVTDDLC 299 T+LP PLL E++ G + A PI+ E + R + LCAS+ IP + A AV + + LC Sbjct: 239 TLLPPMPLLHELDSGALRATPIAPETLTRRIMLCASRQIPASAATLAVAHVAQTLVGQLC 298 Query: 300 RKGKWLHTEGLARE 313 G W + +A E Sbjct: 299 ADGSWREAQLIATE 312 >ref|YP_260937.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY93101.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 315 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 131/307 (42%), Positives = 195/307 (63%), Gaps = 4/307 (1%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQVRQLEEELEAQLLHRSAQGVIATDA 60 ME+RQL+YFVA+VD GSLSRAAR +H+AQ AL++Q+ LE +L AQL HRS G+ DA Sbjct: 1 MEIRQLKYFVAVVDAGSLSRAAREVHVAQSALSKQMSALEADLGAQLFHRSNSGIRVNDA 60 Query: 61 GKTFYEHAQAILKQVIDAKSAVAQSNDKPSGTVALGIPQSVSGALALPLLTAIRATYPEI 120 GK FYE+AQ +LK + DA++A++ SG++ + +PQSV+ +ALPL+ A+ TYP++ Sbjct: 61 GKLFYEYAQGLLKHLQDARAAISSEPGALSGSIVVALPQSVASTVALPLIQAVARTYPKV 120 Query: 121 TLLLTEELTGNLIVQLKSGRINLAVLFDDGQLSPFASTPMVEEEMMYITRADSQYGAGKK 180 L L EELTGNL+ QL GR+++A+ G + +P++EE+ I RAD ++ A Sbjct: 121 ELHLNEELTGNLVDQLVRGRVDIALFTPIGLPPQVSFSPLLEEDFYLIHRADDRH-APPP 179 Query: 181 KSVTLAQAIKAPLILP--GLQHGVRPRIENIVRSQGMSLANV-IEINSVAILKSAILADI 237 VTLA+A+ PL+ P H R ++ + + A V +E+NSV ILKSA+ A I Sbjct: 180 GCVTLAEAVARPLVFPSRAHSHSTRACVDQALERLHLPPAQVAMEVNSVHILKSAVEAGI 239 Query: 238 GATILPVAPLLSEIERGDMVALPISGERMARTLALCASKNIPLTNAAAAVERLVLDVTDD 297 G +I+P+ L E+ G +VA I + RTL +C + +P +N +A+ L+ V D Sbjct: 240 GPSIMPLNLALREVAEGRLVAHTIQPREVFRTLGICVCEALPGSNLRSAIANLIAQVVRD 299 Query: 298 LCRKGKW 304 + R G+W Sbjct: 300 MSRSGEW 306 >ref|YP_004156588.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU38477.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 337 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 136/310 (43%), Positives = 184/310 (59%), Gaps = 4/310 (1%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQVRQLEEELEAQLLHRSAQGVIATDA 60 MELRQ +YFVAIVD GSLSRAA+ L +AQ AL++Q+ +LE EL LL RS GV T+A Sbjct: 1 MELRQFKYFVAIVDCGSLSRAAQQLFVAQSALSKQMAELEGELGTPLLLRSRNGVTVTEA 60 Query: 61 GKTFYEHAQAILKQVIDAKSAVAQSNDKPSGTVALGIPQSVSGALALPLLTAIRATYPEI 120 GK FYE+AQ I KQV DAK+AV + D G+V +PQSVS +ALPL+ A YP++ Sbjct: 61 GKVFYEYAQGITKQVGDAKAAVHVAADSVVGSVVAALPQSVSPMIALPLMRAAARRYPDV 120 Query: 121 TLLLTEELTGNLIVQLKSGRINLAVLFDDGQLSPFASTPMVEEEMMYITRADSQYGAGKK 180 L EELTGN+ QL GR+++A+ A TP+VEE+ +++ A Sbjct: 121 VFHLNEELTGNMADQLLRGRVDVAIFSPTMPAEDIAFTPLVEEDFVFLESPQDPR-ALPP 179 Query: 181 KSVTLAQAIKAPLILPGLQHG--VRPRIENIVRSQGMSLANV-IEINSVAILKSAILADI 237 V++ +A PL+ P HG R ++ ++ + G A V EINSV LK+A+ A + Sbjct: 180 GDVSIEEATARPLVWPANAHGHCTRWLVDAVLEAAGQPPARVAAEINSVYTLKAAVEAGL 239 Query: 238 GATILPVAPLLSEIERGDMVALPISGERMARTLALCASKNIPLTNAAAAVERLVLDVTDD 297 GATI+P+ E+ + A I M RTL LC S ++P TNA A+ L+ DV D Sbjct: 240 GATIMPLGLAQREVREDRLRAHRIDSPAMFRTLGLCVSVHLPTTNAKRAICNLIGDVIRD 299 Query: 298 LCRKGKWLHT 307 LC G+W T Sbjct: 300 LCTSGQWEGT 309