BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0041.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775649.1| outer membrane porin [Herbaspirillum seroped... 614 e-174 ref|YP_004752216.1| outer membrane porin protein [Collimonas fun... 435 e-120 ref|NP_891085.1| outer membrane porin protein precursor [Bordete... 335 1e-89 ref|NP_886218.1| outer membrane porin protein precursor [Bordete... 333 4e-89 ref|YP_001630845.1| outer membrane porin protein precursor [Bord... 315 1e-83 >ref|YP_003775649.1| outer membrane porin [Herbaspirillum seropedicae SmR1] gb|ADJ63741.1| outer membrane porin protein [Herbaspirillum seropedicae SmR1] Length = 374 Score = 614 bits (1584), Expect = e-174, Method: Compositional matrix adjust. Identities = 302/357 (84%), Positives = 326/357 (91%), Gaps = 1/357 (0%) Query: 17 SAFAQSNVTIYGIVDTSIHYLSNANAQGNGNVRVDNGAIANSRIGFKGTEDLGGGLKAMF 76 +AFAQSNVTIYGIVDTSIHYLSNANAQGN NVR+DNGAIANSRIGFKGTEDLGGGLKAMF Sbjct: 18 AAFAQSNVTIYGIVDTSIHYLSNANAQGNSNVRMDNGAIANSRIGFKGTEDLGGGLKAMF 77 Query: 77 QLENGFSSDNGAMLQGGSLFGRQSWVGLQGGLGKIRVGRQNTPLFDLLADHFDPLTVGNY 136 QLENGFSSD GAM QGGSLFGRQSWVGLQGG GK+RVGRQNTPLFDLLADHFDPLTVGNY Sbjct: 78 QLENGFSSDTGAMQQGGSLFGRQSWVGLQGGFGKVRVGRQNTPLFDLLADHFDPLTVGNY 137 Query: 137 ASNSWLPAAGTLIRTPNMLRYDNDFGPLSASVSWAFGEQAGSLRTGSQFSSALRYTVGGF 196 ASNSWLPAA +L+R+PNMLRYD DFGP++AS SWAFGE+AGS+RTGSQFSSALRYT G Sbjct: 138 ASNSWLPAAASLVRSPNMLRYDGDFGPVAASASWAFGEKAGSVRTGSQFSSALRYTAGPL 197 Query: 197 AIGGGYQQTVSASNSSYKDKVWNLSASYDFGPAKVFGGWFNIKDQTGLTGAYMAADSDIS 256 A+GGGYQQTVS++NSS K WNLSASYDFG AKVFGGW NIKD +GLTG+ MAAD D+S Sbjct: 198 ALGGGYQQTVSSTNSSLKHTTWNLSASYDFGVAKVFGGWLNIKDDSGLTGSVMAADGDVS 257 Query: 257 TGWTTATTV-PATPGNQRKDNGFFLGSSYKATSALTLTGAFYYDKSKNVSYTTLGNVGDG 315 GWTTA + G +RKDNGFFLGSSYKAT+ALTLTGAFYYD+SKNVSY + GNVGDG Sbjct: 258 NGWTTAGAANNGSTGVKRKDNGFFLGSSYKATNALTLTGAFYYDRSKNVSYVSTGNVGDG 317 Query: 316 KRYAVVGWADYALSKRTQLYTTIDYNKARDAAVYELTNSASGKNSLTTVGVGIRHIF 372 KRY +VGWADYALSKRTQLYTTIDYNKA+DAAVYELTNSA+GKNSLTTVGVGIRHIF Sbjct: 318 KRYTLVGWADYALSKRTQLYTTIDYNKAKDAAVYELTNSANGKNSLTTVGVGIRHIF 374 >ref|YP_004752216.1| outer membrane porin protein [Collimonas fungivorans Ter331] gb|AEK61393.1| outer membrane porin protein precursor [Collimonas fungivorans Ter331] Length = 362 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/372 (60%), Positives = 275/372 (73%), Gaps = 10/372 (2%) Query: 1 MKKTYLALAIAGLTCTSAFAQSNVTIYGIVDTSIHYLSNANAQGNGNVRVDNGAIANSRI 60 MKK L L AGL SA AQ+NVTIYGIVDTSI YLS+ NA G N + NGAI+NSRI Sbjct: 1 MKKYSLMLVAAGLASGSAMAQTNVTIYGIVDTSIRYLSSDNAAGQKNFVITNGAISNSRI 60 Query: 61 GFKGTEDLGGGLKAMFQLENGFSSDNGAMLQGGSLFGRQSWVGLQGGLGKIRVGRQNTPL 120 GFKGTEDLGGGLKA+F+LENGF+SD G+M +LF RQS+VGL G G + +GRQ TPL Sbjct: 61 GFKGTEDLGGGLKAIFRLENGFNSDTGSMSSANTLFSRQSYVGLSGSFGTVTLGRQQTPL 120 Query: 121 FDLLADHFDPLTVGNYASNSWLPAAGTLIRTPNMLRYDNDFGPLSASVSWAFGEQAGSLR 180 FDL+ADHFDPLTVGNY N+W+PA TLIR NML+Y FG L+A +S+A GE+AGS++ Sbjct: 121 FDLMADHFDPLTVGNYDQNAWMPAGATLIRNSNMLKYYGTFGGLAAGISYAAGEKAGSVK 180 Query: 181 TGSQFSSALRYTVGGFAIGGGYQQTVSASNSSYKDKVWNLSASYDFGPAKVFGGWFNIKD 240 GSQ L YT G FAIGGG+QQTVS +NS +KD +NLS SY G AK+FGG++ IKD Sbjct: 181 LGSQIGGTLAYTAGPFAIGGGFQQTVSPTNSDWKDTAYNLSLSYTLGAAKLFGGYYRIKD 240 Query: 241 QTGLTGAYMAADSDISTGWTTATTVPATPGNQRKDNGFFLGSSYKATSALTLTGAFYYDK 300 TG T AY + + A+ G +RKD+ +FLG++Y+AT A +LT A YYDK Sbjct: 241 STGTTPAYFGVTN------SAASINGGIGGVERKDDAYFLGATYQATPAWSLTAAGYYDK 294 Query: 301 SKNVSYTTLGNVGDGKRYAVVGWADYALSKRTQLYTTIDYNKARDAAVYELTNSASGKNS 360 SKNV+ TLGN+GDG RYA+VG A+YALSKRTQ+Y T+DYNKA++AA+ EL GK+S Sbjct: 295 SKNVTVATLGNLGDGTRYALVGVAEYALSKRTQVYGTVDYNKAKNAALSELV----GKDS 350 Query: 361 LTTVGVGIRHIF 372 +T V VGIRHIF Sbjct: 351 VTGVAVGIRHIF 362 >ref|NP_891085.1| outer membrane porin protein precursor [Bordetella bronchiseptica RB50] emb|CAE34914.1| outer membrane porin protein precursor [Bordetella bronchiseptica RB50] Length = 354 Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 188/375 (50%), Positives = 241/375 (64%), Gaps = 24/375 (6%) Query: 1 MKKTYLALAIAGLTCTSAFAQSNVTIYGIVDTSIHYLSNANAQGNGNVRVDNGAIANSRI 60 MK+ A+A+AG+ +A A+++VT+YGI D S+ YLS N GN V ++NGAI+NSR Sbjct: 1 MKRLIPAVALAGMFVGTAHAETSVTLYGIADVSVRYLSTGNDNGNSRVSMENGAISNSRW 60 Query: 61 GFKGTEDLGGGLKAMFQLENGFSSDNGAMLQGGSLFGRQSWVGLQGG-LGKIRVGRQNTP 119 G +G EDLG G+KA F+LE+GF+ NG S F R ++VGL GG +G I +GRQ+TP Sbjct: 61 GLRGVEDLGDGMKAFFRLESGFNVQNGERSDPDSFFNRHAYVGLDGGEIGAISLGRQDTP 120 Query: 120 LFDLLADHFDPLTVGNYASNSWLPAAGTLIRTPNMLRYDND-FGPLSASVSWAFGEQAGS 178 LF +LAD +DPLTVGNYA NSWLP A + R+ N +RY ND +S+AF + Sbjct: 121 LFTILADSYDPLTVGNYAQNSWLPVAMSRARSSNSVRYRNDKLAGFDVILSYAFSDSFED 180 Query: 179 LRTGSQFSSALRYTVGGFAIGGGYQQTVSASNSSYKDKVWNLSASYDFGPAKVFGGWFNI 238 + G Q+ L YT G F+IGGGY T SASNS Y+ +VWNL+ASY F AKVF G+FN Sbjct: 181 HKLGEQYGGTLSYTTGPFSIGGGYMLTHSASNSDYQQRVWNLNASYKFETAKVFIGYFNG 240 Query: 239 KDQTGLTGAYMAADSDISTGWTTATTVPATPGNQRKDNGFFLGSSYKATSALTLTGAFYY 298 +D+TG A M T++P G +RKDNG+F G +++AT LTGA YY Sbjct: 241 RDETGFVNAVMG-----------NTSLPDN-GLERKDNGYFAGVTWQATPRWALTGAAYY 288 Query: 299 DKSKNVSYTTLGNVGD-GKRYAVVGWADYALSKRTQLYTTIDYNKARDAAVYELTNSASG 357 D SKN L GD GKRYA+VG A+YALSKRTQ+Y TIDYNK +DAA E+ G Sbjct: 289 DTSKN-----LVEEGDKGKRYALVGVAEYALSKRTQVYGTIDYNKVKDAATGEI----QG 339 Query: 358 KNSLTTVGVGIRHIF 372 + VGIRHIF Sbjct: 340 DDKQIGAAVGIRHIF 354 >ref|NP_886218.1| outer membrane porin protein precursor [Bordetella parapertussis 12822] emb|CAE39361.1| outer membrane porin protein precursor [Bordetella parapertussis] Length = 354 Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 187/375 (49%), Positives = 240/375 (64%), Gaps = 24/375 (6%) Query: 1 MKKTYLALAIAGLTCTSAFAQSNVTIYGIVDTSIHYLSNANAQGNGNVRVDNGAIANSRI 60 MK+ A+A+AG+ + A+++VT+YGI D S+ YLS N GN V ++NGAI+NSR Sbjct: 1 MKRLIPAVALAGMFVGTVHAETSVTLYGIADVSVRYLSTGNDNGNSRVSMENGAISNSRW 60 Query: 61 GFKGTEDLGGGLKAMFQLENGFSSDNGAMLQGGSLFGRQSWVGLQGG-LGKIRVGRQNTP 119 G +G EDLG G+KA F+LE+GF+ NG S F R ++VGL GG +G I +GRQ+TP Sbjct: 61 GLRGVEDLGDGMKAFFRLESGFNVQNGERSDPDSFFNRHAYVGLDGGEIGAISLGRQDTP 120 Query: 120 LFDLLADHFDPLTVGNYASNSWLPAAGTLIRTPNMLRYDND-FGPLSASVSWAFGEQAGS 178 LF +LAD +DPLTVGNYA NSWLP A + R+ N +RY ND +S+AF + Sbjct: 121 LFTILADSYDPLTVGNYAQNSWLPVAMSRARSSNSVRYRNDKLAGFDVILSYAFSDSFED 180 Query: 179 LRTGSQFSSALRYTVGGFAIGGGYQQTVSASNSSYKDKVWNLSASYDFGPAKVFGGWFNI 238 + G Q+ L YT G F+IGGGY T SASNS Y+ +VWNL+ASY F AKVF G+FN Sbjct: 181 HKLGEQYGGTLSYTTGPFSIGGGYMLTHSASNSDYQQRVWNLNASYKFETAKVFIGYFNG 240 Query: 239 KDQTGLTGAYMAADSDISTGWTTATTVPATPGNQRKDNGFFLGSSYKATSALTLTGAFYY 298 +D+TG A M T++P G +RKDNG+F G +++AT LTGA YY Sbjct: 241 RDETGFVNAVMG-----------NTSLPDN-GLERKDNGYFAGVTWQATPRWALTGAAYY 288 Query: 299 DKSKNVSYTTLGNVGD-GKRYAVVGWADYALSKRTQLYTTIDYNKARDAAVYELTNSASG 357 D SKN L GD GKRYA+VG A+YALSKRTQ+Y TIDYNK +DAA E+ G Sbjct: 289 DTSKN-----LVEEGDKGKRYALVGVAEYALSKRTQVYGTIDYNKVKDAATGEI----QG 339 Query: 358 KNSLTTVGVGIRHIF 372 + VGIRHIF Sbjct: 340 DDKQIGAAVGIRHIF 354 >ref|YP_001630845.1| outer membrane porin protein precursor [Bordetella petrii DSM 12804] emb|CAP42577.1| outer membrane porin protein precursor [Bordetella petrii] Length = 352 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 173/354 (48%), Positives = 229/354 (64%), Gaps = 25/354 (7%) Query: 21 QSNVTIYGIVDTSIHYLSNANAQGNGNVRVDNGAIANSRIGFKGTEDLGGGLKAMFQLEN 80 Q++VT+YGI D S+ YLS ++ + NGAI+NSR G +GTEDLG G+KA F+LEN Sbjct: 22 QTSVTLYGIADISMRYLSRSSQDDGSRFGLANGAISNSRWGLRGTEDLGDGMKAFFRLEN 81 Query: 81 GFSSDNGAMLQGGSLFGRQSWVGLQGG-LGKIRVGRQNTPLFDLLADHFDPLTVGNYASN 139 GFS NG F R +++GL GG +G + +G QNTP+F+LLADHFDPLTVGNY N Sbjct: 82 GFSMQNGNGSDPDKTFSRLAYLGLDGGAIGTLTLGLQNTPMFNLLADHFDPLTVGNYDQN 141 Query: 140 SWLPAAGTLIRTPNMLRYDNDFGPLSASVSWAFGEQAGSLRTGSQFSSALRYTVGGFAIG 199 +WLPAA + +RT NM Y N G L+ +S+A GE + GSQ+ ++LRYT G A+G Sbjct: 142 AWLPAAMSRVRTGNMFTYSNTLGGLALVLSYANGEDYDDHKVGSQYGASLRYTFGQLALG 201 Query: 200 GGYQQTVSASNSSYKDKVWNLSASYDFGPAKVFGGWFNIKDQTGLTGAYMAADSDISTGW 259 G YQQT S +NS + +VWNL+ASY F AK+F G+FN +D+TG A M Sbjct: 202 GAYQQTYSDTNSDDRQRVWNLNASYQFDSAKLFAGYFNGRDETGFVNAVMGG-------- 253 Query: 260 TTATTVPATPGNQRKDNGFFLGSSYKATSALTLTGAFYYDKSKNVSYTTLGNVGD-GKRY 318 PG RKD+G+F G +++AT +TGA YYD+SKNV+ + GD GKRY Sbjct: 254 ------TPMPGLDRKDDGYFAGVTWQATPRWAVTGAAYYDRSKNVAES-----GDKGKRY 302 Query: 319 AVVGWADYALSKRTQLYTTIDYNKARDAAVYELTNSASGKNSLTTVGVGIRHIF 372 A+V A+YALSKR+Q+Y T+DYNK +DAA E+ +G +S VG RHIF Sbjct: 303 ALVAVAEYALSKRSQVYATVDYNKVKDAARDEI----NGGSSQLGAAVGFRHIF 352