BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0033.p         (103 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774623.1| periplasmic or secreted lipoprotein [Herbasp...   127   5e-28
ref|YP_004681482.1| transporter [Cupriavidus necator N-1] >gi|33...   119   1e-25
ref|YP_746733.1| transport-associated [Nitrosomonas eutropha C91...   119   2e-25
ref|YP_002601655.1| putative periplasmatic protein [Desulfobacte...   119   2e-25
ref|ZP_08272712.1| transport-associated protein [Oxalobacteracea...   118   3e-25

>ref|YP_003774623.1| periplasmic or secreted lipoprotein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ62715.1| periplasmic or secreted lipoprotein [Herbaspirillum seropedicae
           SmR1]
          Length = 109

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 80/103 (77%)

Query: 1   MIMTKRFAAFFFALFVLALAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIG 60
           M +TKRF  FF ALF+++L GC S P +  TG+Y+DD+VITTKVKAAIF E +LK+ EI 
Sbjct: 6   MSLTKRFIGFFLALFMVSLVGCASGPNKEGTGEYVDDAVITTKVKAAIFNEKDLKSTEIN 65

Query: 61  VETFKGIVQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           VET+KG+VQLSGFV++S A+ +A E+ R V+GV  V+N L +K
Sbjct: 66  VETYKGVVQLSGFVSSSTAAARATELARGVKGVVSVRNDLRLK 108


>ref|YP_004681482.1| transporter [Cupriavidus necator N-1]
 gb|AEI80250.1| transporter [Cupriavidus necator N-1]
          Length = 103

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 73/103 (70%)

Query: 1   MIMTKRFAAFFFALFVLALAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIG 60
           M    R +AFF  + +    GC STP+Q  TG+Y+DD+V+TTKVKAA+  EP LK+ EI 
Sbjct: 1   MTYLNRLSAFFLTVLMAFSLGCASTPKQEGTGEYVDDTVLTTKVKAAVLNEPTLKSAEIN 60

Query: 61  VETFKGIVQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           VETFKG+VQLSGFV + A + KA EV R V+GVK VKN + +K
Sbjct: 61  VETFKGVVQLSGFVRSQADASKAVEVARGVKGVKSVKNDMRIK 103


>ref|YP_746733.1| transport-associated [Nitrosomonas eutropha C91]
 gb|ABI58768.1| transport-associated protein [Nitrosomonas eutropha C91]
          Length = 104

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 74/101 (73%)

Query: 3   MTKRFAAFFFALFVLALAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIGVE 62
           +   F  FF  L +++L GC ST +Q+ TG+Y+DD+VITTKVKAAIF EP LK+ EI VE
Sbjct: 4   LNNHFFTFFLTLLMVSLLGCASTAKQSGTGEYLDDTVITTKVKAAIFNEPILKSAEINVE 63

Query: 63  TFKGIVQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           TFKG+VQLSGFV++   + +A E+ R V GVK VKN + +K
Sbjct: 64  TFKGVVQLSGFVSSQVHANRAVEIARSVGGVKSVKNDMRIK 104


>ref|YP_002601655.1| putative periplasmatic protein [Desulfobacterium autotrophicum
           HRM2]
 gb|ACN13491.1| putative periplasmatic protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 105

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 73/96 (76%), Gaps = 1/96 (1%)

Query: 9   AFFFALFVLA-LAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIGVETFKGI 67
            F    F+ A +AGC  T  + S G+Y+DDSVITTKVKA IF+EP LK L+I VETFKG 
Sbjct: 9   CFIIGFFLFAFVAGCAGTRHKESMGEYVDDSVITTKVKAQIFDEPMLKVLQINVETFKGE 68

Query: 68  VQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           VQLSGFVN++AAS +A EV R V+GV+ VKNSL+VK
Sbjct: 69  VQLSGFVNSAAASARAVEVARSVKGVQSVKNSLIVK 104


>ref|ZP_08272712.1| transport-associated protein [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33816.1| transport-associated protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 103

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 75/103 (72%)

Query: 1   MIMTKRFAAFFFALFVLALAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIG 60
           MI +KR + FF A  ++A+AGC ST  +  TG+Y+DD+VITTKVKAA+  EP LK+ EI 
Sbjct: 1   MIFSKRISTFFLAAALIAVAGCASTSTKEGTGEYVDDTVITTKVKAALLNEPALKSREIN 60

Query: 61  VETFKGIVQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           VETFKG+VQLSGFV N A +  AA + R V+GV  VKN + +K
Sbjct: 61  VETFKGVVQLSGFVANQADATMAATLARGVKGVMSVKNDIRMK 103