BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0032.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775647.1| D-amino acid dehydrogenase small subunit [He...   124   3e-27
ref|ZP_08273101.1| D-amino acid dehydrogenase small subunit [Oxa...   110   6e-23
ref|YP_001100025.1| putative D-amino acid dehydrogenase small su...   103   6e-21
ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacteriu...   102   2e-20
ref|YP_004685354.1| D-amino acid dehydrogenase small subunit [Cu...    96   3e-18

>ref|YP_003775647.1| D-amino acid dehydrogenase small subunit [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63739.1| D-amino acid dehydrogenase, small subunit, protein [Herbaspirillum
           seropedicae SmR1]
          Length = 423

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 82/115 (71%), Gaps = 1/115 (0%)

Query: 1   VGGGLSGVTTAYFLARAGFEVAVLERRANVAEEATFGNSGLLAPSVVQPLVLPAITRTAF 60
           +GGGLSG+ +AYFLA  G+EVAV+ERRA+VAEEATFG+SGLLAP    PL LP    T F
Sbjct: 11  IGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPLTLPGALAT-F 69

Query: 61  SNLFKSEPPILVKSGFNPSRWRWVRKSRREYQDYFSLNKQRLTRLSAYGXRLLQR 115
           +  F+ EP +L+ SG +  R RW+R +R   Q +F+ +K  L+RLSAYG  L Q+
Sbjct: 70  ACRFQDEPRVLLASGADFGRRRWMRATRAAQQHHFAQHKLILSRLSAYGQDLTQQ 124


>ref|ZP_08273101.1| D-amino acid dehydrogenase small subunit [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF33446.1| D-amino acid dehydrogenase small subunit [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 414

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 80/116 (68%), Gaps = 1/116 (0%)

Query: 1   VGGGLSGVTTAYFLARAGFEVAVLERRANVAEEATFGNSGLLAPSVVQPLVLPAITRTAF 60
           +GGG+ GV+TAYFLA AG EVA++ERR+NVAEEA+FGNSGL+AP++  P  +P +    F
Sbjct: 6   IGGGVLGVSTAYFLAAAGHEVALIERRSNVAEEASFGNSGLVAPALSAPWAMPGMPGKLF 65

Query: 61  SNLFKSEPPILVKSGFNPSRWRWVRKSRREYQ-DYFSLNKQRLTRLSAYGXRLLQR 115
           +  F+ E P++++   +P+ WRW R+   E   + F +NK RL R+  Y   +L++
Sbjct: 66  AQWFRQESPMVLRRRLDPALWRWARRWVSECDAERFRINKLRLQRIGFYSRDVLEQ 121


>ref|YP_001100025.1| putative D-amino acid dehydrogenase small subunit [Herminiimonas
           arsenicoxydans]
 emb|CAL61900.1| D-amino acid dehydrogenase, small subunit [Herminiimonas
           arsenicoxydans]
          Length = 414

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)

Query: 9   TTAYFLARAGFEVAVLERRANVAEEATFGNSGLLAPSVVQPLVLPAITRTAFSNLFKSEP 68
            TAYFLA AG +V V+ERR NVAEEA+FG+SG+LAP+ + P   P   ++  S+L KSE 
Sbjct: 14  CTAYFLAEAGHQVVVIERRNNVAEEASFGDSGILAPASIAPWAAPGAAKSLLSHLLKSES 73

Query: 69  PILVKSGFNPSRWRWVRKSRREYQ-DYFSLNKQRLTRLSAYGXRLLQR 115
           P+L     +PS WRW+R+  +E   + + +N+ R+ R++ Y  +++++
Sbjct: 74  PLLFNRMLDPSMWRWIRRWLKECDIERYQINRNRMQRIAFYSDQIMRQ 121


>ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille]
 gb|ABR88666.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille]
          Length = 414

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 1   VGGGLSGVTTAYFLARAGFEVAVLERRANVAEEATFGNSGLLAPSVVQPLVLPAITRTAF 60
           +G G+ GV+TAYFLA AG EV V+ER  NVAEEA++G+SG+LA S + P   P + R+  
Sbjct: 6   IGAGVIGVSTAYFLAEAGHEVVVIERHNNVAEEASYGDSGILAASSIAPWAAPGVPRSFL 65

Query: 61  SNLFKSEPPILVKSGFNPSRWRWVRKSRREYQ-DYFSLNKQRLTRLSAYGXRLLQ 114
           S L KSE P+L+   + PS   W+R+  +E   + + +N++R+ R+  Y   ++Q
Sbjct: 66  SYLLKSEAPVLLNQPWRPSMLGWMRRWMKEADIERYRINRERMQRIGFYSRDIMQ 120


>ref|YP_004685354.1| D-amino acid dehydrogenase small subunit [Cupriavidus necator N-1]
 gb|AEI76873.1| D-amino acid dehydrogenase small subunit [Cupriavidus necator N-1]
          Length = 432

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 1   VGGGLSGVTTAYFLARAGFEVAVLERRANVAEEATFGNSGLLAPSVVQPLVLPAITRTAF 60
           +G G  GV++A++L +AGF+V VLERRA  A+EA+FGN+G++AP  V P   P +     
Sbjct: 6   IGAGAIGVSSAWYLRQAGFDVTVLERRAAPAQEASFGNAGVIAPGYVTPWAAPGMPGKIL 65

Query: 61  SNLFKSEPPILVKSGFNPSRWRWVRKSRREYQ-DYFSLNKQRLTRLSAYGXRLLQR 115
             LF  E P+L +   +P+ WRW+ +  RE + + +  NK R+ RL+ Y    L R
Sbjct: 66  RTLFAREAPVLFRPSADPAMWRWIARWLRECRLERYRANKLRMQRLAFYSRACLHR 121