BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0029.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775645.1| drug/metabolite transporter (DMT) superfamil... 462 e-128 ref|YP_003979426.1| hypothetical protein AXYL_03391 [Achromobact... 244 1e-62 ref|ZP_06688050.1| conserved hypothetical protein [Achromobacter... 244 1e-62 gb|EFV83590.1| hypothetical protein HMPREF0005_02982 [Achromobac... 238 8e-61 gb|EGP43887.1| hypothetical protein AXXA_23790 [Achromobacter xy... 236 3e-60 >ref|YP_003775645.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ63737.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/292 (78%), Positives = 251/292 (85%) Query: 1 LGIIFLISALWTLSLLDTAGKLLGMAGYHVVMIAWMRYSINTVFMAATLMPLYKRRHGRS 60 LGI+FLIS LWTLSLLDTAGKLL +AGYHVVMIAWMRY+IN FMAATL PLY+RRHGRS Sbjct: 17 LGILFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFFMAATLAPLYRRRHGRS 76 Query: 61 ILHSTRPRLQVLRALALLLSTLIFFSVLKIVPLAEGTAMNFCAPLIVLAVSPWLLGETTY 120 IL S R LQ+ R LL STLIFFSVLKIVPLAEGTAMNFCAPLIVLA+SPWLLGE +Y Sbjct: 77 ILQSNRLGLQLGRGALLLGSTLIFFSVLKIVPLAEGTAMNFCAPLIVLAISPWLLGERSY 136 Query: 121 ISRWVAVAVGFAGMLIVIRPGGDIPAHGVVLGLLSAATYATVSILNRKANQADDPMVTLF 180 +SRW+AV VGF GMLIVIRP GDIP +GV LGL+SA T A +SILNRKA+QAD+PMVTLF Sbjct: 137 LSRWIAVLVGFTGMLIVIRPSGDIPPYGVALGLISALTQALLSILNRKASQADNPMVTLF 196 Query: 181 YGGLVGMVVSSLMVPFFWSPHTPDATEWMILASTGITSTIGHFFMNSAYRHAEASVLTPF 240 YG LVG VVS+L+VPFFW+ HTP E IL STGITSTIGHF NSAYRHAEASVLTPF Sbjct: 197 YGALVGSVVSTLLVPFFWTSHTPTMVELAILVSTGITSTIGHFLQNSAYRHAEASVLTPF 256 Query: 241 AYSQIISASAMGWLVFNQFPDAVTILGIAIICASGMGIAYVEHRRAHPLRAA 292 Y+QIISA MGWLVF QFPD VT+LGIAIICASG+GIAY+EH+RAHPL A Sbjct: 257 FYAQIISACGMGWLVFGQFPDRVTVLGIAIICASGIGIAYIEHKRAHPLPPA 308 >ref|YP_003979426.1| hypothetical protein AXYL_03391 [Achromobacter xylosoxidans A8] gb|ADP16711.1| hypothetical protein AXYL_03391 [Achromobacter xylosoxidans A8] Length = 319 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 128/292 (43%), Positives = 188/292 (64%), Gaps = 10/292 (3%) Query: 1 LGIIFLISALWTLSLLDTAGKLLGMAGYHVVMIAWMRYSINTVFMAATLMPLYKRRHGRS 60 +G++ L+ ++WTLS LD +GK + AG +++++W RY+++ + A ++P G Sbjct: 21 MGVLLLVLSMWTLSCLDASGKWVMNAGVPLLVLSWFRYAVHLALVLALVLP----ARGLG 76 Query: 61 ILHSTRPRLQVLRALALLLSTLIFFSVLKIVPLAEGTAMNFCAPLIVLAVSPWLLGETTY 120 + S +PR Q+LR ++ L+TL+FF+ L +P AE TA+NF APL+VL+ +PW+L E Sbjct: 77 VFRSKKPREQILRGGSMFLATLMFFTTLSYIPQAEATAINFLAPLLVLSAAPWVLKEPAR 136 Query: 121 ISRWVAVAVGFAGMLIVIRPGGDIPAHGVVLGLLSAATYATVSILNRKANQADDPMVTLF 180 +SR+VA + F G++IVIRPGG + G V GLL+A +A I R+ DDP +L Sbjct: 137 LSRFVAAGIAFIGVIIVIRPGGGLDPVGTVFGLLTACCFAVQFIATRRV-AGDDPFTSLI 195 Query: 181 YGGLVGMVVSSLMVPFFWSPHTP-----DATEWMILASTGITSTIGHFFMNSAYRHAEAS 235 + G VG + +L +PF P P +W++L STGIT +GH F +AYR A AS Sbjct: 196 WSGAVGTICLTLALPFILPPALPILKALAPLDWVVLISTGITGGLGHLFQIAAYRRAPAS 255 Query: 236 VLTPFAYSQIISASAMGWLVFNQFPDAVTILGIAIICASGMGIAYVEHRRAH 287 L PF Y QIISA+++GWLV+ FPD +T LGIAIICASG+GI +E RR+ Sbjct: 256 TLAPFVYLQIISATSVGWLVWGHFPDPLTWLGIAIICASGIGIGLIEWRRSR 307 >ref|ZP_06688050.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF75013.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 319 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 129/294 (43%), Positives = 189/294 (64%), Gaps = 10/294 (3%) Query: 1 LGIIFLISALWTLSLLDTAGKLLGMAGYHVVMIAWMRYSINTVFMAATLMPLYKRRHGRS 60 +GI+ L+ ++WTLS LD +GK + AG +++++W RY ++ + + A ++P G Sbjct: 21 VGILLLVLSMWTLSCLDASGKWVMNAGVPLLVLSWFRYVVHLILVLALVLP----ARGLR 76 Query: 61 ILHSTRPRLQVLRALALLLSTLIFFSVLKIVPLAEGTAMNFCAPLIVLAVSPWLLGETTY 120 +L S RPR Q++R ++ L+TL+FF+ L +P AE TA+NF APL+VL+++PW+L E Sbjct: 77 VLRSNRPREQLIRGGSMFLATLMFFTTLSYIPQAEATAINFLAPLLVLSLAPWVLKEPAR 136 Query: 121 ISRWVAVAVGFAGMLIVIRPGGDIPAHGVVLGLLSAATYATVSILNRKANQADDPMVTLF 180 +SR+VA + F G++IVIRPGG + G + GLL+A +A I R+ DDP +L Sbjct: 137 LSRFVAAGIAFIGVIIVIRPGGGLHPIGTIFGLLTACCFAAQFIATRRV-AGDDPFTSLI 195 Query: 181 YGGLVGMVVSSLMVPFFWSPHTP-----DATEWMILASTGITSTIGHFFMNSAYRHAEAS 235 + G VG V ++ +PF P +W +L STG+T +GH F +AYR A AS Sbjct: 196 WSGAVGTVCLTVTLPFVLPAALPVLQSLSGFDWFLLISTGLTGGVGHLFQIAAYRRAPAS 255 Query: 236 VLTPFAYSQIISASAMGWLVFNQFPDAVTILGIAIICASGMGIAYVEHRRAHPL 289 L PF Y QIISA+++GWLV+ FPD +T LGIAIICASG+GI VE RR+ L Sbjct: 256 TLAPFIYLQIISATSVGWLVWGHFPDPLTWLGIAIICASGIGIGLVEWRRSMAL 309 >gb|EFV83590.1| hypothetical protein HMPREF0005_02982 [Achromobacter xylosoxidans C54] Length = 317 Score = 238 bits (607), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 129/287 (44%), Positives = 186/287 (64%), Gaps = 10/287 (3%) Query: 1 LGIIFLISALWTLSLLDTAGKLLGMAGYHVVMIAWMRYSINTVFMAATLMPLYKRRHGRS 60 +GI+ L+ ++WTLS LD +GK + AG +++++W RY+++ V + A ++P G Sbjct: 21 VGILLLVLSMWTLSCLDASGKWVMNAGVPLLVLSWFRYAVHLVLVLALVLP----TRGTG 76 Query: 61 ILHSTRPRLQVLRALALLLSTLIFFSVLKIVPLAEGTAMNFCAPLIVLAVSPWLLGETTY 120 IL S +PR Q+LR ++ L+TL+FF+ L +P AE TA+NF APL+VL+++PW+L E Sbjct: 77 ILRSKKPREQILRGGSMFLATLMFFTTLSYIPQAEATAINFLAPLLVLSLAPWILKEPAR 136 Query: 121 ISRWVAVAVGFAGMLIVIRPGGDIPAHGVVLGLLSAATYATVSILNRKANQADDPMVTLF 180 +SR+VA + F G++IVIRPGG + G + GLL+A +A I R+ DDP +L Sbjct: 137 MSRFVAAGIAFVGVIIVIRPGGGLHPVGTIFGLLTACCFAAQFIATRRV-AGDDPFTSLI 195 Query: 181 YGGLVGMVVSSLMVPFFWSPHTP-----DATEWMILASTGITSTIGHFFMNSAYRHAEAS 235 + G VG +L +PF P P +W +L STG+T +GH F +AYR A AS Sbjct: 196 WSGAVGTGCLTLALPFILPPALPVLQALTPLDWTLLISTGVTGGLGHLFQIAAYRRAPAS 255 Query: 236 VLTPFAYSQIISASAMGWLVFNQFPDAVTILGIAIICASGMGIAYVE 282 L PF Y QIISA+ +GWLV++ FPD +T LGIAIICASG+GI VE Sbjct: 256 TLAPFIYLQIISATTVGWLVWDHFPDPLTWLGIAIICASGIGIGLVE 302 >gb|EGP43887.1| hypothetical protein AXXA_23790 [Achromobacter xylosoxidans AXX-A] Length = 311 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 129/287 (44%), Positives = 186/287 (64%), Gaps = 10/287 (3%) Query: 1 LGIIFLISALWTLSLLDTAGKLLGMAGYHVVMIAWMRYSINTVFMAATLMPLYKRRHGRS 60 +GI+ L+ ++WTLS LD +GK + AG +++++W RY+++ V + A ++P G Sbjct: 18 VGILLLVLSMWTLSCLDASGKWVMNAGVPLLVLSWFRYAVHLVLVLALVLP----TRGIG 73 Query: 61 ILHSTRPRLQVLRALALLLSTLIFFSVLKIVPLAEGTAMNFCAPLIVLAVSPWLLGETTY 120 IL S +PR Q+LR ++ L+TL+FF+ L +P AE TA+NF APL+VL+++PW+L E Sbjct: 74 ILRSNKPREQLLRGGSMFLATLMFFTTLSYIPQAEATAINFLAPLLVLSLAPWILKEPAR 133 Query: 121 ISRWVAVAVGFAGMLIVIRPGGDIPAHGVVLGLLSAATYATVSILNRKANQADDPMVTLF 180 +SR+VA + F G++IVIRPGG + G + GLL+A +A I R+ DDP +L Sbjct: 134 MSRFVAAGIAFIGVIIVIRPGGGLHPVGTIFGLLTACCFAAQFIATRRV-AGDDPFTSLI 192 Query: 181 YGGLVGMVVSSLMVPFFWSPHTP-----DATEWMILASTGITSTIGHFFMNSAYRHAEAS 235 + G VG +L +PF P P +W +L STG+T +GH F +AYR A AS Sbjct: 193 WSGAVGTGCLTLALPFILPPALPVLQALTPLDWTLLISTGVTGGLGHLFQIAAYRRAPAS 252 Query: 236 VLTPFAYSQIISASAMGWLVFNQFPDAVTILGIAIICASGMGIAYVE 282 L PF Y QIISA+ +GWLV++ FPD +T LGIAIICASG+GI VE Sbjct: 253 TLAPFIYLQIISATTVGWLVWDHFPDPLTWLGIAIICASGIGIGLVE 299