BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0022.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_997479.1| putative phenylacetate-CoA ligase [Verminephrob... 570 e-161 ref|YP_004753206.1| coenzyme F390 synthetase [Collimonas fungivo... 563 e-158 ref|YP_003775968.1| phenylacetyl-CoA-ligase [Herbaspirillum sero... 563 e-158 ref|ZP_08276403.1| putative phenylacetate-CoA ligase [Oxalobacte... 528 e-148 ref|YP_983830.1| putative phenylacetate-CoA ligase [Polaromonas ... 431 e-118 >ref|YP_997479.1| putative phenylacetate-CoA ligase [Verminephrobacter eiseniae EF01-2] gb|ABM58461.1| putative phenylacetate-CoA ligase [Verminephrobacter eiseniae EF01-2] Length = 413 Score = 570 bits (1470), Expect = e-161, Method: Compositional matrix adjust. Identities = 280/326 (85%), Positives = 300/326 (92%) Query: 1 VSPGPIFDPEGHSQDWWRFERPMRALGLRAGHIIQNCFSYHFTPAAFMAEGAAAKLGCAV 60 VSPGPIFDPEG QDWWRF RPMRALGL AGHIIQNCFSYHFTPAAFM EGAAA+LGCAV Sbjct: 88 VSPGPIFDPEGQQQDWWRFARPMRALGLHAGHIIQNCFSYHFTPAAFMVEGAAARLGCAV 147 Query: 61 IPSGIGQTELQVQTMASLRPDAYVGTPSFLKIIIEKAQEMGVALDSLQRALVSAEALPPS 120 IP+G GQT LQVQTM +L+ DAYVGTPSFLKI++EKAQEMG+AL SLQRALVS EALPPS Sbjct: 148 IPAGTGQTGLQVQTMRALQADAYVGTPSFLKILLEKAQEMGLALASLQRALVSGEALPPS 207 Query: 121 LRSWFHDNGVPNVLQLYASADIGNIAYESISEGKVNPGMVLDEDLILEIVRPGTGDPVRP 180 LR+WF D+GVP+VLQLYASADIGNIAYESISEG+VNPGMVLDEDLILEIV PGTGD V P Sbjct: 208 LRNWFVDHGVPHVLQLYASADIGNIAYESISEGRVNPGMVLDEDLILEIVHPGTGDLVAP 267 Query: 181 GEVGEVVVTSFNPDYPLIRFGTGDLTATLDGVSPCGRTNTRIKGWMGRADQTTKVRGMFV 240 GEVGEVVVTSFNPDYPLIRFGTGDL+A L G+SPCGRTNTRI+GW+GRADQTTKVRGMFV Sbjct: 268 GEVGEVVVTSFNPDYPLIRFGTGDLSAVLAGISPCGRTNTRIEGWLGRADQTTKVRGMFV 327 Query: 241 HPSQVAEITRRHGLILKARLVVSGEMANDSMTLHCETQDMESAVAQAAAIADSVRDVTKL 300 HP QVAE+ RRH LILKARLVVSG MANDSMTL+CET DME+A QAAAIADSVRD+TKL Sbjct: 328 HPQQVAEMARRHALILKARLVVSGGMANDSMTLYCETTDMEAAAQQAAAIADSVRDITKL 387 Query: 301 RGDVLFAAPGSLPNDGKVIEDARKYE 326 RG+V F APGSLPNDGKVIEDARKYE Sbjct: 388 RGEVKFVAPGSLPNDGKVIEDARKYE 413 >ref|YP_004753206.1| coenzyme F390 synthetase [Collimonas fungivorans Ter331] gb|AEK62383.1| Coenzyme F390 synthetase [Collimonas fungivorans Ter331] Length = 415 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 264/326 (80%), Positives = 296/326 (90%), Gaps = 2/326 (0%) Query: 1 VSPGPIFDPEGHSQDWWRFERPMRALGLRAGHIIQNCFSYHFTPAAFMAEGAAAKLGCAV 60 VSPG IFDPEG+ QDWWRF RPMRALGLRAG +IQNCF+YHFTPAAFM EGAA+KLGCAV Sbjct: 92 VSPGAIFDPEGYGQDWWRFSRPMRALGLRAGDLIQNCFTYHFTPAAFMVEGAASKLGCAV 151 Query: 61 IPSGIGQTELQVQTMASLRPDAYVGTPSFLKIIIEKAQEMGVALDSLQRALVSAEALPPS 120 IP+GIGQTELQVQ M++LRPDAYVGTPSFLKIIIEKA+EMG + ++QRAL+SAEALPPS Sbjct: 152 IPAGIGQTELQVQAMSALRPDAYVGTPSFLKIIIEKAREMGADIGTVQRALLSAEALPPS 211 Query: 121 LRSWFHDNGVPNVLQLYASADIGNIAYESISEGKVNPGMVLDEDLILEIVRPGTGDPVRP 180 LR WFHDNGVP+VLQLYASAD+GNIAYES+S G++NPGM+LDEDLILEIVRPG+GDPV Sbjct: 212 LRQWFHDNGVPHVLQLYASADVGNIAYESLSNGRLNPGMILDEDLILEIVRPGSGDPVAA 271 Query: 181 GEVGEVVVTSFNPDYPLIRFGTGDLTATLDGVSPCGRTNTRIKGWMGRADQTTKVRGMFV 240 GEVGEVV+TSFNPDYPLIRF TGDL+A L+GVSPCGRTNTRIKGWMGRADQ TKVRGMFV Sbjct: 272 GEVGEVVLTSFNPDYPLIRFATGDLSAVLEGVSPCGRTNTRIKGWMGRADQVTKVRGMFV 331 Query: 241 HPSQVAEITRRHGLILKARLVVSGEMANDSMTLHCETQDMESAVAQAAAIADSVRDVTKL 300 HPSQ+AE+ +RH +LKARLVVSG MAND MTLHCE QD + A+ IADS+R++TKL Sbjct: 332 HPSQLAEVLKRHPQVLKARLVVSGAMANDVMTLHCEAQDAPALAAE--QIADSLREITKL 389 Query: 301 RGDVLFAAPGSLPNDGKVIEDARKYE 326 RG+VLF APGSLPNDGKVIEDARKYE Sbjct: 390 RGEVLFVAPGSLPNDGKVIEDARKYE 415 >ref|YP_003775968.1| phenylacetyl-CoA-ligase [Herbaspirillum seropedicae SmR1] gb|ADJ64060.1| phenylacetyl-CoA-ligase protein [Herbaspirillum seropedicae SmR1] Length = 423 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 266/326 (81%), Positives = 293/326 (89%) Query: 1 VSPGPIFDPEGHSQDWWRFERPMRALGLRAGHIIQNCFSYHFTPAAFMAEGAAAKLGCAV 60 VSPGPIFDPEGH DWWRF PM+ALGL+AGHI+QNCF+YHFTPAAFM EGAAA+LGCAV Sbjct: 98 VSPGPIFDPEGHGADWWRFASPMKALGLQAGHILQNCFAYHFTPAAFMVEGAAARLGCAV 157 Query: 61 IPSGIGQTELQVQTMASLRPDAYVGTPSFLKIIIEKAQEMGVALDSLQRALVSAEALPPS 120 IP+GIGQTELQV MA+L+PDAYVGTPSFLKIIIEKAQEMG + S+QRALVSAEALPPS Sbjct: 158 IPAGIGQTELQVNAMAALKPDAYVGTPSFLKIIIEKAQEMGADISSVQRALVSAEALPPS 217 Query: 121 LRSWFHDNGVPNVLQLYASADIGNIAYESISEGKVNPGMVLDEDLILEIVRPGTGDPVRP 180 LR+WFH++GVP VLQLYASADIGNIAYE++SEG V+PGMVLDE LILEIVRPGTGDPV Sbjct: 218 LRNWFHEHGVPQVLQLYASADIGNIAYETMSEGAVHPGMVLDEALILEIVRPGTGDPVAA 277 Query: 181 GEVGEVVVTSFNPDYPLIRFGTGDLTATLDGVSPCGRTNTRIKGWMGRADQTTKVRGMFV 240 GEVGEVVVTSFNPDYPLIRFGTGDL+A + GVSPCGRTNTRIKGWMGRADQTTKVRGMFV Sbjct: 278 GEVGEVVVTSFNPDYPLIRFGTGDLSAVVPGVSPCGRTNTRIKGWMGRADQTTKVRGMFV 337 Query: 241 HPSQVAEITRRHGLILKARLVVSGEMANDSMTLHCETQDMESAVAQAAAIADSVRDVTKL 300 HPSQVA++ RRH +L+ARLVVSGEMAND MTLHCE D E+ A+A S+R+VTKL Sbjct: 338 HPSQVADVLRRHADVLRARLVVSGEMANDVMTLHCEVGDPENPAIDVGALAGSLREVTKL 397 Query: 301 RGDVLFAAPGSLPNDGKVIEDARKYE 326 RG+VL APGSLPNDGKVIEDARKYE Sbjct: 398 RGEVLLVAPGSLPNDGKVIEDARKYE 423 >ref|ZP_08276403.1| putative phenylacetate-CoA ligase [Oxalobacteraceae bacterium IMCC9480] gb|EGF30125.1| putative phenylacetate-CoA ligase [Oxalobacteraceae bacterium IMCC9480] Length = 415 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 251/328 (76%), Positives = 284/328 (86%), Gaps = 6/328 (1%) Query: 1 VSPGPIFDPEGHSQDWWRFERPMRALGLRAGHIIQNCFSYHFTPAAFMAEGAAAKLGCAV 60 +SPGPIFDPEG S DWWRF R + ALGLR+G ++QNCFSYHFTPAAFM EGAAAKLGC V Sbjct: 92 MSPGPIFDPEGRSDDWWRFARGLHALGLRSGDLLQNCFSYHFTPAAFMVEGAAAKLGCVV 151 Query: 61 IPSGIGQTELQVQTMASLRPDAYVGTPSFLKIIIEKAQEMGVALDSLQRALVSAEALPPS 120 IP+G GQTE+QVQ MA L+P AYVGTPSFLK+IIEKA++MG + + QRALVSAEALPPS Sbjct: 152 IPAGSGQTEMQVQAMAELKPAAYVGTPSFLKLIIEKARDMGADISATQRALVSAEALPPS 211 Query: 121 LRSWFHDNGVPNVLQLYASADIGNIAYESISEGKVNPGMVLDEDLILEIVRPGTGDPVRP 180 LRSW DNGVP+VLQ+YASADIGNIAYE+ + G+VNPGM++DED++LEIVRPGTGDPV P Sbjct: 212 LRSWLQDNGVPHVLQMYASADIGNIAYETETAGRVNPGMIVDEDILLEIVRPGTGDPVAP 271 Query: 181 GEVGEVVVTSFNPDYPLIRFGTGDLTATLDGVSPCGRTNTRIKGWMGRADQTTKVRGMFV 240 GEVGEVVVTSFNPDYPLIRF TGDL+A L+G SPCGRTN RIKGWMGRADQTTKVR MFV Sbjct: 272 GEVGEVVVTSFNPDYPLIRFATGDLSAVLEGTSPCGRTNLRIKGWMGRADQTTKVRAMFV 331 Query: 241 HPSQVAEITRRHGLILKARLVVSGEMANDSMTLHCE--TQDMESAVAQAAAIADSVRDVT 298 HPSQVAEI RR + KARLVVSGEMAND MTLHCE TQD A +AAI +++R+VT Sbjct: 332 HPSQVAEIVRRFPAVGKARLVVSGEMANDLMTLHCEVATQD----AAMSAAIVEAIREVT 387 Query: 299 KLRGDVLFAAPGSLPNDGKVIEDARKYE 326 KLRG+VL APG+L NDGKVIEDAR+YE Sbjct: 388 KLRGEVLLVAPGTLANDGKVIEDARRYE 415 >ref|YP_983830.1| putative phenylacetate-CoA ligase [Polaromonas naphthalenivorans CJ2] gb|ABM38909.1| putative phenylacetate-CoA ligase [Polaromonas naphthalenivorans CJ2] Length = 416 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/325 (65%), Positives = 246/325 (75%), Gaps = 7/325 (2%) Query: 2 SPGPIFDPEGHSQDWWRFERPMRALGLRAGHIIQNCFSYHFTPAAFMAEGAAAKLGCAVI 61 SPGP+++PEG +D+WR R + A G R G ++QNCFSYHF PA M E A LGC V Sbjct: 99 SPGPMYEPEGTRRDYWRMARALFAAGFRPGELVQNCFSYHFVPAGSMMESGAHALGCTVF 158 Query: 62 PSGIGQTELQVQTMASLRPDAYVGTPSFLKIIIEKAQEMGVALDSLQRALVSAEALPPSL 121 P G GQTE QVQ MA L+P Y+GTPSFLKII+EKA EM VAL S+ +A+VSAEA PPSL Sbjct: 159 PGGTGQTEQQVQAMAELKPAGYIGTPSFLKIIVEKAAEMKVALPSVTKAMVSAEAFPPSL 218 Query: 122 RSWFHDNGVPNVLQLYASADIGNIAYESISEGKVNPGMVLDEDLILEIVRPGTGDPVRPG 181 R W + G+ Q YA+AD+G IAYE+ + G+VLDE +I+EIVRPGTGDPV G Sbjct: 219 RDWLAERGIAG-YQCYATADLGLIAYET----EAREGLVLDEGVIVEIVRPGTGDPVVEG 273 Query: 182 EVGEVVVTSFNPDYPLIRFGTGDLTATLDGVSPCGRTNTRIKGWMGRADQTTKVRGMFVH 241 EVGE+VVT+ NPDYPLIRFGTGDL+A L G P GRTNTRIKGWMGRADQTTKVRGMFVH Sbjct: 274 EVGELVVTTLNPDYPLIRFGTGDLSAVLPGQCPSGRTNTRIKGWMGRADQTTKVRGMFVH 333 Query: 242 PSQVAEITRRHGLILKARLVVSGEMANDSMTLHCETQDMESAVAQAAAIADSVRDVTKLR 301 P+QVAEI RR ++KARLVVSGEMANDSMTL ET + + Q I D++RDVTKLR Sbjct: 334 PAQVAEIARRFPEVIKARLVVSGEMANDSMTLSVETTASPAGLEQ--RIGDAIRDVTKLR 391 Query: 302 GDVLFAAPGSLPNDGKVIEDARKYE 326 G V APGSLPNDGKVIEDAR Y+ Sbjct: 392 GRVELLAPGSLPNDGKVIEDARSYK 416