BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0017.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775972.1| amino acid ABC transporter permease [Herbasp... 554 e-156 ref|YP_004753210.1| inner-membrane translocator [Collimonas fung... 548 e-154 ref|ZP_08276482.1| ABC-type transporter, permease component: HAA... 547 e-154 ref|YP_997483.1| inner-membrane translocator [Verminephrobacter ... 524 e-147 ref|YP_004684147.1| high-affinity branched-chain amino acid tran... 513 e-143 >ref|YP_003775972.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64064.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 554 bits (1428), Expect = e-156, Method: Compositional matrix adjust. Identities = 292/304 (96%), Positives = 298/304 (98%) Query: 1 MQFFFEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 MQFF EVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM Sbjct: 1 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 Query: 61 WAAIIGAFLVMIVVGLATERFVLRKLVNQPPITLFMATIGLAFFLEGLGPLLFGSEVRPI 120 WAAIIGAF+VMI+VGLATERFVLRKLVNQPPITLFMATIGL FFLEGLGPLLFGSEVRPI Sbjct: 61 WAAIIGAFVVMILVGLATERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI 120 Query: 121 ELGIVDEPIMSVMDSIGIGISKFDLFASGMVIGLVALLALFFQKTKVGRALRAVADDHQA 180 +LGIVDEPI SVMDSIGIGISKFDLFASGMV+ LVA LALFFQKTKVGRALRAVADDHQA Sbjct: 121 DLGIVDEPIQSVMDSIGIGISKFDLFASGMVVALVAALALFFQKTKVGRALRAVADDHQA 180 Query: 181 ALSLGIPLQHIWAVVWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 ALSLGIPLQHIWAVVWGVAGFVAL+AGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP Sbjct: 181 ALSLGIPLQHIWAVVWGVAGFVALIAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 Query: 241 GAIVGGLIIGASEKLAEIYIPPVLQDLFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 GAIVGGLIIGASEKLAEIYIPPV+QD FGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH Sbjct: 241 GAIVGGLIIGASEKLAEIYIPPVMQDAFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 Query: 301 IDRV 304 IDRV Sbjct: 301 IDRV 304 >ref|YP_004753210.1| inner-membrane translocator [Collimonas fungivorans Ter331] gb|AEK62387.1| inner-membrane translocator [Collimonas fungivorans Ter331] Length = 304 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 283/304 (93%), Positives = 290/304 (95%) Query: 1 MQFFFEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 MQFF EVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLM+KG PM Sbjct: 1 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMDKGWPM 60 Query: 61 WAAIIGAFLVMIVVGLATERFVLRKLVNQPPITLFMATIGLAFFLEGLGPLLFGSEVRPI 120 WAAIIGAF VMIVV +ATER VLRKLVNQPPITLFMATIGLAFFLEGLGP+LFGSEVR I Sbjct: 61 WAAIIGAFAVMIVVAVATERLVLRKLVNQPPITLFMATIGLAFFLEGLGPMLFGSEVRAI 120 Query: 121 ELGIVDEPIMSVMDSIGIGISKFDLFASGMVIGLVALLALFFQKTKVGRALRAVADDHQA 180 LGIVDEPI SVMD GIGISKFDLFASGMVIGLV LLALFFQKTKVGRALRAVADDHQA Sbjct: 121 NLGIVDEPIASVMDGFGIGISKFDLFASGMVIGLVLLLALFFQKTKVGRALRAVADDHQA 180 Query: 181 ALSLGIPLQHIWAVVWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 ALSLGIPL+HIW +VWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP Sbjct: 181 ALSLGIPLRHIWVIVWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 Query: 241 GAIVGGLIIGASEKLAEIYIPPVLQDLFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 GAI GGLIIG SEKLAEIYIPPV+QD+FGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH Sbjct: 241 GAIAGGLIIGVSEKLAEIYIPPVMQDMFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 Query: 301 IDRV 304 IDRV Sbjct: 301 IDRV 304 >ref|ZP_08276482.1| ABC-type transporter, permease component: HAAT family [Oxalobacteraceae bacterium IMCC9480] gb|EGF30048.1| ABC-type transporter, permease component: HAAT family [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 547 bits (1410), Expect = e-154, Method: Compositional matrix adjust. Identities = 277/304 (91%), Positives = 293/304 (96%) Query: 1 MQFFFEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 M+FFFEV LSG+L+GLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLM+KG+PM Sbjct: 1 MKFFFEVLLSGMLTGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMDKGLPM 60 Query: 61 WAAIIGAFLVMIVVGLATERFVLRKLVNQPPITLFMATIGLAFFLEGLGPLLFGSEVRPI 120 WAAIIGAF VM++VGL+TERFVLRKLVNQPPITLFMATIGL FFLEGLGPLLFGSEVRPI Sbjct: 61 WAAIIGAFAVMLLVGLSTERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI 120 Query: 121 ELGIVDEPIMSVMDSIGIGISKFDLFASGMVIGLVALLALFFQKTKVGRALRAVADDHQA 180 LGIVDEPI S+MD+ GIGISKFDLFASGMVI LV LLALFFQKTK+GRALRAVADDHQA Sbjct: 121 NLGIVDEPIQSIMDNYGIGISKFDLFASGMVIVLVTLLALFFQKTKIGRALRAVADDHQA 180 Query: 181 ALSLGIPLQHIWAVVWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 ALSLGIPLQHIWA+VWGVAGFVAL AGLLWGSRNGVQFALTMTALKALPVLILGGFTS+P Sbjct: 181 ALSLGIPLQHIWAIVWGVAGFVALAAGLLWGSRNGVQFALTMTALKALPVLILGGFTSVP 240 Query: 241 GAIVGGLIIGASEKLAEIYIPPVLQDLFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 GAIVGGLIIGASEKLAEIYIPPV+Q+ FGGNFGGIEGWFPYVFALLFLLVRP GLFGE+H Sbjct: 241 GAIVGGLIIGASEKLAEIYIPPVMQETFGGNFGGIEGWFPYVFALLFLLVRPSGLFGEKH 300 Query: 301 IDRV 304 IDRV Sbjct: 301 IDRV 304 >ref|YP_997483.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] gb|ABM58465.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] Length = 304 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 279/304 (91%), Positives = 291/304 (95%) Query: 1 MQFFFEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 M FFFEV LSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLM+KG+PM Sbjct: 1 MLFFFEVLLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMDKGLPM 60 Query: 61 WAAIIGAFLVMIVVGLATERFVLRKLVNQPPITLFMATIGLAFFLEGLGPLLFGSEVRPI 120 WAAIIG+F+VMI++ +ATER VLRKLVNQPPITLFMATIGLAFFLEGLGPLLFG EVR I Sbjct: 61 WAAIIGSFMVMILLAIATERLVLRKLVNQPPITLFMATIGLAFFLEGLGPLLFGIEVRAI 120 Query: 121 ELGIVDEPIMSVMDSIGIGISKFDLFASGMVIGLVALLALFFQKTKVGRALRAVADDHQA 180 +LGIVDEPIM +MD +GIGISKFDLFASG VI LVALLALFFQ+TK+GRALRAVADDHQA Sbjct: 121 DLGIVDEPIMPIMDRLGIGISKFDLFASGTVIALVALLALFFQRTKLGRALRAVADDHQA 180 Query: 181 ALSLGIPLQHIWAVVWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 ALSLGIPLQHIWAVVWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP Sbjct: 181 ALSLGIPLQHIWAVVWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 Query: 241 GAIVGGLIIGASEKLAEIYIPPVLQDLFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 GAIVGGLIIGASEKLAEIYIPPVLQ F GNFGGIEGWFPYVFALLFLLVRPEGLFGERH Sbjct: 241 GAIVGGLIIGASEKLAEIYIPPVLQGAFDGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 Query: 301 IDRV 304 IDRV Sbjct: 301 IDRV 304 >ref|YP_004684147.1| high-affinity branched-chain amino acid transport system permease LivH [Cupriavidus necator N-1] gb|AEI75666.1| high-affinity branched-chain amino acid transport system permease protein LivH [Cupriavidus necator N-1] Length = 304 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 260/304 (85%), Positives = 285/304 (93%) Query: 1 MQFFFEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 M FFFE+ + GLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLM+KG+PM Sbjct: 1 MTFFFEILIGGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMDKGLPM 60 Query: 61 WAAIIGAFLVMIVVGLATERFVLRKLVNQPPITLFMATIGLAFFLEGLGPLLFGSEVRPI 120 WAA+IGAF+VMI+VG++TERFVLRKLVNQPPITLFMATIGL+FFLEGLGPLLFG+EVRPI Sbjct: 61 WAAVIGAFVVMILVGMSTERFVLRKLVNQPPITLFMATIGLSFFLEGLGPLLFGNEVRPI 120 Query: 121 ELGIVDEPIMSVMDSIGIGISKFDLFASGMVIGLVALLALFFQKTKVGRALRAVADDHQA 180 LGIVDEPI S++ + I +SKFD+ A+ + LV LALFFQ TKVGRALRAVADDHQA Sbjct: 121 NLGIVDEPIESILTNFNIVLSKFDIAAAAIAGVLVGSLALFFQYTKVGRALRAVADDHQA 180 Query: 181 ALSLGIPLQHIWAVVWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 ALSLGIPLQ+IWA+VWGVAGFVALVAG+LWGSRNGVQFALT+TALKALPVLILGGFTS+P Sbjct: 181 ALSLGIPLQNIWAIVWGVAGFVALVAGMLWGSRNGVQFALTLTALKALPVLILGGFTSVP 240 Query: 241 GAIVGGLIIGASEKLAEIYIPPVLQDLFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 GAIVGGLIIGASEKLAEIYIPPV Q +FGGNFGGIEGWFPYVFALLFLLVRPEGLFGE+H Sbjct: 241 GAIVGGLIIGASEKLAEIYIPPVFQSMFGGNFGGIEGWFPYVFALLFLLVRPEGLFGEKH 300 Query: 301 IDRV 304 IDRV Sbjct: 301 IDRV 304