BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0014.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753213.1| Crp/Fnr family transcriptional regulator [Co... 426 e-117 ref|YP_003775975.1| cyclic nucleotide-binding protein [Herbaspir... 415 e-114 gb|EGW59827.1| putative transcriptional regulator, Crp/Fnr famil... 299 2e-79 ref|YP_003166853.1| Crp/Fnr family transcriptional regulator [Ca... 283 2e-74 ref|YP_004684143.1| CRP family transcriptional regulator [Cupria... 280 1e-73 >ref|YP_004753213.1| Crp/Fnr family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62390.1| transcriptional regulator, Crp/Fnr family [Collimonas fungivorans Ter331] Length = 232 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/229 (89%), Positives = 215/229 (93%) Query: 1 MIETSKTTIQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHE 60 +I +T+IQDML K++WAR+LT QL RV++E+FSRKI G FVCHKGDPV+HWIGVHE Sbjct: 4 IIMIKETSIQDMLAKTMWARSLTDAQLARVEAEMFSRKIAGGAFVCHKGDPVTHWIGVHE 63 Query: 61 GLLKMSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWL 120 GLLKMSSVSPEGKTVSFAGMANGGWLGEGSLLK EPRKYDVVALRDSELLYMPKATYLWL Sbjct: 64 GLLKMSSVSPEGKTVSFAGMANGGWLGEGSLLKSEPRKYDVVALRDSELLYMPKATYLWL 123 Query: 121 LDNSIPFNRFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQI 180 LDNSI FNRFLVTQLNERL LFISLVEYDRMLEPDARVARCLAALFNPYLNPGIG ELQI Sbjct: 124 LDNSIQFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGRELQI 183 Query: 181 SQEEVGNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQFHS 229 SQEEVGNLSGASRQRANQALQVLEKAGLLKVDYGSITILDL+GLRQFHS Sbjct: 184 SQEEVGNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLDGLRQFHS 232 >ref|YP_003775975.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ64067.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1] Length = 225 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/222 (90%), Positives = 211/222 (95%) Query: 6 KTTIQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKM 65 +T+I+ ML KSIWA+ALT EQL RV++E+ SRKIPAGG+VC KGD V+HWIGVHEGLLKM Sbjct: 2 ETSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKM 61 Query: 66 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSI 125 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALR+SELLYMPKATY+WLLDNSI Sbjct: 62 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSI 121 Query: 126 PFNRFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEV 185 PFNRFLVTQLNERL LFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGL LQISQEEV Sbjct: 122 PFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEV 181 Query: 186 GNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 GNLSG SRQRANQALQVLEKAGLLKVDYGSITI DLEGLRQF Sbjct: 182 GNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 >gb|EGW59827.1| putative transcriptional regulator, Crp/Fnr family [Dechlorosoma suillum PS] Length = 224 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 135/220 (61%), Positives = 179/220 (81%) Query: 8 TIQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKMSS 67 T+ ++L + W R LT E+ R+++ F R+IPAGGFVC+KG+PV +W+GV +GL+K++S Sbjct: 3 TLSELLHSTTWGRELTGEEFARIEAGTFVRRIPAGGFVCYKGEPVDYWLGVIDGLVKIAS 62 Query: 68 VSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSIPF 127 GKT +F G+ GGW GEGS+LK+EPR+YDVVALRDS++ M + T+ WLLD+SIPF Sbjct: 63 HGVTGKTATFTGVPAGGWFGEGSMLKNEPRRYDVVALRDSQVACMSRTTFQWLLDHSIPF 122 Query: 128 NRFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEVGN 187 NRFL+ QLNERLG FI VE DR+LE DAR+ARC+A+LFNP L PGIG +LQISQEE+G Sbjct: 123 NRFLLNQLNERLGQFIGRVEMDRLLETDARIARCVASLFNPVLYPGIGPQLQISQEEIGY 182 Query: 188 LSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 L+G SRQRANQAL++LE+ GLL+V+YG +T++DLEGLR+F Sbjct: 183 LAGVSRQRANQALKLLEEHGLLRVEYGGVTVIDLEGLRRF 222 >ref|YP_003166853.1| Crp/Fnr family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV34924.1| transcriptional regulator, Crp/Fnr family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 230 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 129/227 (56%), Positives = 178/227 (78%) Query: 1 MIETSKTTIQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHE 60 +IE ++ DML S WAR L++++L++V+ + F R IPAGG+VC KG+ V +W+G+ + Sbjct: 2 LIEPRIQSLDDMLCASCWARQLSADELDQVRRDTFVRTIPAGGYVCMKGEAVDYWLGIVD 61 Query: 61 GLLKMSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWL 120 GL KM+S GK SF G+++G W GEGSL+KDEPR+YDV+ALR+S + YM ++ + L Sbjct: 62 GLAKMASNWRTGKATSFVGLSSGSWFGEGSLMKDEPRRYDVIALRESRIAYMKRSRFQHL 121 Query: 121 LDNSIPFNRFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQI 180 LD+SIPFNRFL+ QLNERL FI ++E++R+L+ D+R+ARCLA++FNP L PG LEL+I Sbjct: 122 LDHSIPFNRFLLLQLNERLSQFIGMIEHERLLDSDSRLARCLASMFNPLLYPGSSLELRI 181 Query: 181 SQEEVGNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 SQEE+G L+G SRQR NQAL LE+AGLL++DYG++TILDL GLR F Sbjct: 182 SQEEIGLLAGISRQRVNQALHKLEEAGLLRIDYGTLTILDLAGLRSF 228 >ref|YP_004684143.1| CRP family transcriptional regulator [Cupriavidus necator N-1] gb|AEI75662.1| transcriptional regulator CRP family [Cupriavidus necator N-1] Length = 222 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 126/219 (57%), Positives = 172/219 (78%) Query: 9 IQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKMSSV 68 + D + + +WA L+ EQ ERV+ +F + G +VCHKGD HW+GV EG++K+++V Sbjct: 2 LNDFVDRCVWAADLSPEQRERVRRAMFVHEYTQGDYVCHKGDMAEHWMGVLEGIVKITTV 61 Query: 69 SPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSIPFN 128 SP GK+V+F G+ GGW GEG++LK E RKYDV+ALR S + ++P+ T+LWLLD S+PF Sbjct: 62 SPSGKSVTFTGVPTGGWFGEGAVLKSEIRKYDVMALRRSTIAFLPRDTFLWLLDTSLPFT 121 Query: 129 RFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEVGNL 188 RFL+TQ NERLG FI+ VEY+R+L+ D+RVAR +++LFN +L PGIG L+ISQEE+G L Sbjct: 122 RFLLTQFNERLGQFIAAVEYERLLDIDSRVARAVSSLFNEHLYPGIGTTLEISQEEIGLL 181 Query: 189 SGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 +G SRQRANQAL+VLE+ GL++VDYG I +LDLEGLRQ+ Sbjct: 182 AGISRQRANQALKVLEQQGLVRVDYGVIEVLDLEGLRQY 220