BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0009.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775979.1| two component sensor histidine kinase [Herba... 379 e-103 gb|EDZ39224.1| Multi-sensor signal transduction histidine kinase... 243 2e-62 ref|YP_678682.1| sensor histidine kinase/response regulator fusi... 235 4e-60 gb|EAY55888.1| Multi-sensor signal transduction histidine kinase... 234 7e-60 ref|NP_275587.1| sensory transduction histidine kinase [Methanot... 229 3e-58 >ref|YP_003775979.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64071.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 633 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/256 (72%), Positives = 209/256 (81%) Query: 5 DNGRVISRNVIHDISGRKQTEREIEELNASLKRQAQHLSNINKELESFSYSVSHDLRAPL 64 D ++ISR VI+DIS RK+ E EIE LNA LKRQA HL ++NKELESFSYSVSHDLRAPL Sbjct: 346 DRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHLHSVNKELESFSYSVSHDLRAPL 405 Query: 65 RAISGYAMMVEEDYAAALDAKGQELLQVIRRNVSKMDALISDLLKLSKSATGELTLGHFS 124 RAISGYAM++EEDYA A+D KG+E LQVIRRNV KMD LI+DLLKL+KS TGELTL FS Sbjct: 406 RAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDELINDLLKLAKSTTGELTLERFS 465 Query: 125 MREQVEQSIAGLRRENAGVEFIVDPLEDVIANQVLLGQVWDNLLGNAVKFSKKAEHAVVR 184 M + V Q IAGLRREN V F V PLE +AN+ L+ QVW+NLL NAVKFS K+E VR Sbjct: 466 MDDLVRQVIAGLRRENPNVLFDVPPLEGAVANRGLITQVWENLLSNAVKFSSKSEQPAVR 525 Query: 185 VSSTSTPEEVIYQVQDNGIGFDMRYVHKLFGTFQRLHRQEDYAGAGIGLALVQRIVVRHG 244 VS PEE IY V DNG+GFDMRY HKLFGTFQRLHRQE+YAG GIGLALVQRIV+RH Sbjct: 526 VSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGLALVQRIVIRHT 585 Query: 245 GRVWAESRSGEGASFY 260 GRVWA+S+ GEGASFY Sbjct: 586 GRVWAQSKPGEGASFY 601 >gb|EDZ39224.1| Multi-sensor signal transduction histidine kinase [Leptospirillum sp. Group II '5-way CG'] Length = 596 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 123/261 (47%), Positives = 168/261 (64%), Gaps = 5/261 (1%) Query: 5 DNGRVIS-RNVIHDISGRKQTEREIEELNASLKRQAQHLSNINKELESFSYSVSHDLRAP 63 D+G+ S R V+ D++ ++ E +I +LN +L + + L N ELE FSYSVSHDLRAP Sbjct: 325 DSGKFFSTRGVLLDMTDKRIDEEKILDLNRTLSERNRQLEVTNGELEGFSYSVSHDLRAP 384 Query: 64 LRAISGYAMMVEEDYAAALDAKGQELLQVIRRNVSKMDALISDLLKLSKSATGELTLGHF 123 LR+I G++ +++EDYA LDA+G+ ++ VIR N KM LI DLL S+ + Sbjct: 385 LRSIDGFSRILQEDYAGKLDAEGERVIGVIRNNTRKMSNLIDDLLAFSRLGKKAFSWSLV 444 Query: 124 SM----REQVEQSIAGLRRENAGVEFIVDPLEDVIANQVLLGQVWDNLLGNAVKFSKKAE 179 M RE + + + GV+ + PL ++ LL QVW NLL NAVKFS+K E Sbjct: 445 DMEALIREDILPGVLSGSEKGTGVDVTLSPLPRAWGDRTLLAQVWTNLLSNAVKFSEKRE 504 Query: 180 HAVVRVSSTSTPEEVIYQVQDNGIGFDMRYVHKLFGTFQRLHRQEDYAGAGIGLALVQRI 239 VRV EEV+Y V+DNG+GFDM+Y KLF FQRLH Q ++ G G+GLA+VQR+ Sbjct: 505 KPSVRVEGRVETEEVVYTVRDNGVGFDMQYYDKLFKVFQRLHAQAEFPGTGVGLAIVQRV 564 Query: 240 VVRHGGRVWAESRSGEGASFY 260 + RHGGRVWAES+S EGA+F+ Sbjct: 565 IARHGGRVWAESQSNEGAAFH 585 >ref|YP_678682.1| sensor histidine kinase/response regulator fusion protein [Cytophaga hutchinsonii ATCC 33406] gb|ABG59340.1| sensor histidine kinase/response regulator fusion protein (sensor for arcA) [Cytophaga hutchinsonii ATCC 33406] Length = 492 Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 119/244 (48%), Positives = 158/244 (64%), Gaps = 1/244 (0%) Query: 17 DISGRKQTEREIEELNASLKRQAQHLSNINKELESFSYSVSHDLRAPLRAISGYAMMVEE 76 DI+ RK+ + EI LN L Q L N NKELESFSYSVSHDLRAPLR+I+ YA M+E+ Sbjct: 243 DITERKKKDDEIIRLNQDLHENIQQLENANKELESFSYSVSHDLRAPLRSINNYAQMLED 302 Query: 77 DYAAALDAKGQELLQVIRRNVSKMDALISDLLKLSKSATGELTLGHFSMREQVEQSIAGL 136 +AA +D K LL I+RN +MD LI DLL S+ + +M + V+ A + Sbjct: 303 AFAAQMDEKSTRLLGNIKRNAFRMDTLIDDLLAFSRLGRKPVQKQSINMNDLVQHVYADM 362 Query: 137 RRENAGVEFIVDPLEDVIANQVLLGQVWDNLLGNAVKFSKKAEHAVVRVSSTSTPEEVIY 196 + G EF++ L D+ A+ LL QV NLL NA+K+S K E + V T P V+Y Sbjct: 363 QGTFKG-EFVLPALPDIDADYNLLKQVVVNLLSNAIKYSGKIEEPRIEVGYTKNPNAVVY 421 Query: 197 QVQDNGIGFDMRYVHKLFGTFQRLHRQEDYAGAGIGLALVQRIVVRHGGRVWAESRSGEG 256 ++DNG GFDM Y KLFG FQRLH +++ G G+GLA+V+RIV +HGG +WAE++ GEG Sbjct: 422 YIKDNGAGFDMEYSDKLFGVFQRLHSTKEFEGTGVGLAIVKRIVEKHGGTIWAEAKVGEG 481 Query: 257 ASFY 260 A+FY Sbjct: 482 ATFY 485 >gb|EAY55888.1| Multi-sensor signal transduction histidine kinase [Leptospirillum rubarum] Length = 596 Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 124/259 (47%), Positives = 162/259 (62%), Gaps = 5/259 (1%) Query: 7 GRVIS-RNVIHDISGRKQTEREIEELNASLKRQAQHLSNINKELESFSYSVSHDLRAPLR 65 GR +S R V+ D++ + E +I +LN +L + L N ELE FSYSVSHDLRAPLR Sbjct: 327 GRFLSTRGVLLDMTQKLIDEEKILDLNRTLSERNMQLEVTNGELEGFSYSVSHDLRAPLR 386 Query: 66 AISGYAMMVEEDYAAALDAKGQELLQVIRRNVSKMDALISDLLKLSKSATGELTLGHFSM 125 +I G++ +++EDYA LDA+G+ ++ VIR N KM LI DLL S+ M Sbjct: 387 SIDGFSRILQEDYAGKLDAEGERVIGVIRNNTRKMSNLIDDLLAFSRLGKKAFAWSLVDM 446 Query: 126 ----REQVEQSIAGLRRENAGVEFIVDPLEDVIANQVLLGQVWDNLLGNAVKFSKKAEHA 181 RE + I + AGVE + PL + LL QVW NLL NAVKFS+K E Sbjct: 447 EALIREDILPGILSGGGKGAGVEVTLSPLPRAWGDSTLLAQVWTNLLSNAVKFSEKREKP 506 Query: 182 VVRVSSTSTPEEVIYQVQDNGIGFDMRYVHKLFGTFQRLHRQEDYAGAGIGLALVQRIVV 241 VRV EV+Y V+DNG+GFDM+Y KLF FQRLH Q ++ G G+GLA+VQR++ Sbjct: 507 SVRVEGKVEMGEVVYTVRDNGVGFDMQYYDKLFKVFQRLHAQAEFPGTGVGLAIVQRVIA 566 Query: 242 RHGGRVWAESRSGEGASFY 260 RHGGRVWAES+ EGA+F+ Sbjct: 567 RHGGRVWAESQLNEGAAFH 585 >ref|NP_275587.1| sensory transduction histidine kinase [Methanothermobacter thermautotrophicus str. Delta H] gb|AAB84950.1| sensory transduction histidine kinase [Methanothermobacter thermautotrophicus str. Delta H] Length = 373 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 116/242 (47%), Positives = 157/242 (64%), Gaps = 2/242 (0%) Query: 21 RKQTEREIEELNASLKRQAQHLSNINKELESFSYSVSHDLRAPLRAISGYAMMVEEDYAA 80 R + R + ELN LK+QA+ L + NKELE+F+YSVSHDLR PLRAI G++ ++ EDY Sbjct: 124 RIEKVRSLRELNLELKKQAEKLEDANKELEAFAYSVSHDLRVPLRAIDGFSRILVEDYED 183 Query: 81 ALDAKGQELLQVIRRNVSKMDALISDLLKLSKSATGELTLGHFSMREQVEQSIAGLRREN 140 LD +G +L +IR N KM LI D+L LS++ E+ L MRE E + L + Sbjct: 184 KLDDEGVRILGIIRDNTRKMGQLIDDILLLSRAGRQEMNLAMLDMRELAESTYRELASQE 243 Query: 141 AG--VEFIVDPLEDVIANQVLLGQVWDNLLGNAVKFSKKAEHAVVRVSSTSTPEEVIYQV 198 G +EF V L +A++ L+GQV NLL NA+KF++ + AV+ V +E Y V Sbjct: 244 EGRSIEFSVADLPPAMADRALMGQVMGNLLSNAIKFTRDRDPAVIEVGYMDGGDEHTYYV 303 Query: 199 QDNGIGFDMRYVHKLFGTFQRLHRQEDYAGAGIGLALVQRIVVRHGGRVWAESRSGEGAS 258 +DNG GFDM+Y KLFG FQRLH QE++ G G+GL++VQRI+ RHGGRVW E + GA+ Sbjct: 304 KDNGAGFDMKYASKLFGLFQRLHSQEEFEGTGVGLSIVQRIIKRHGGRVWGEGKVDGGAT 363 Query: 259 FY 260 Y Sbjct: 364 IY 365