BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0108.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001351702.1| response regulator/GGDEF domain-containing p... 397 e-109 ref|YP_003776412.1| response regulator protein [Herbaspirillum s... 358 6e-97 ref|YP_004753023.1| two-component response regulator [Collimonas... 341 6e-92 ref|YP_297849.1| response regulator receiver modulated diguanyla... 334 9e-90 ref|YP_586104.1| response regulator of a two-component system [C... 332 5e-89 >ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] gb|ABR89542.1| response regulator/GGDEF domain protein [Janthinobacterium sp. Marseille] Length = 341 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/228 (83%), Positives = 212/228 (92%) Query: 12 NDSDLGIRLPPADYKIMVLLVDDQAMVGEAIRRALLTESDIDFHFCPRAEDALGIAEKTQ 71 +DSDLGI LP +YKIMVLLVDDQ MVGEAIRRALL++ +IDFH+C RA++AL +AEKT+ Sbjct: 7 SDSDLGIHLPAEEYKIMVLLVDDQPMVGEAIRRALLSDPNIDFHYCARADEALRVAEKTK 66 Query: 72 PTVILQDLVMPGVDGLTLVKQYRSNPLTMDIPIIVLSSKEDALVKRDAFATGVNDYMVKL 131 PTVILQDLVMPGVDGLTLV+QYR N +T DIPIIVLS++EDA VKRDAFATGVNDYMVKL Sbjct: 67 PTVILQDLVMPGVDGLTLVRQYRQNAITCDIPIIVLSTREDAEVKRDAFATGVNDYMVKL 126 Query: 132 PDTIELIARIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTSIANRR 191 PDTIELIARIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLT IANRR Sbjct: 127 PDTIELIARIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTGIANRR 186 Query: 192 YFDDYLNAEWKRAKRVQQEISLLLIDVDNFKLYNDNYGHVAGNSXLRR 239 YFDDYL+AEWKRA+R QQE+S+LLIDVDNFKLYND YGHVAG+ L++ Sbjct: 187 YFDDYLSAEWKRARREQQELSILLIDVDNFKLYNDTYGHVAGDLVLKQ 234 >ref|YP_003776412.1| response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64504.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 341 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 172/220 (78%), Positives = 197/220 (89%) Query: 20 LPPADYKIMVLLVDDQAMVGEAIRRALLTESDIDFHFCPRAEDALGIAEKTQPTVILQDL 79 LP +YKIMVLLVDDQ MVGEAIRRAL E IDFHFC RAE+AL +AE+T+PTVILQDL Sbjct: 15 LPADEYKIMVLLVDDQPMVGEAIRRALANEPHIDFHFCTRAEEALTVAERTRPTVILQDL 74 Query: 80 VMPGVDGLTLVKQYRSNPLTMDIPIIVLSSKEDALVKRDAFATGVNDYMVKLPDTIELIA 139 VMPGVDG+TLV+QYR++ + +++PIIVLSS++DA+VKRDAFA G NDYMVKLPD IEL+A Sbjct: 75 VMPGVDGMTLVRQYRASAVLVNVPIIVLSSRDDAVVKRDAFAGGANDYMVKLPDVIELVA 134 Query: 140 RIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTSIANRRYFDDYLNA 199 RIRYHSRSY NLLQRDAAY ALRESQQQLQKSNFELQRLTNTDGLT IANRRYFDDYL A Sbjct: 135 RIRYHSRSYINLLQRDAAYSALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGA 194 Query: 200 EWKRAKRVQQEISLLLIDVDNFKLYNDNYGHVAGNSXLRR 239 EW+RA+R +++LLLIDVD FKLYNDNYGHVAG++ LR+ Sbjct: 195 EWRRARRDGLDLALLLIDVDFFKLYNDNYGHVAGDAVLRQ 234 >ref|YP_004753023.1| two-component response regulator [Collimonas fungivorans Ter331] gb|AEK62200.1| Two-component response regulator [Collimonas fungivorans Ter331] Length = 336 Score = 341 bits (875), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 164/250 (65%), Positives = 200/250 (80%), Gaps = 7/250 (2%) Query: 15 DLGIRLPPADYKIMVLLVDDQAMVGEAIRRALLTESDIDFHFCPRAEDALGIAEKTQPTV 74 +L I PP DY +MVLLVDDQAMVGEA+RRAL + +IDFH+C ++A+ A+KT+PTV Sbjct: 6 NLDIDQPPDDYPVMVLLVDDQAMVGEAVRRALANQINIDFHYCAHPDEAIEAAQKTRPTV 65 Query: 75 ILQDLVMPGVDGLTLVKQYRSNPLTMDIPIIVLSSKEDALVKRDAFATGVNDYMVKLPDT 134 ILQDLVMPG+DGLTLV+QYR+NP T ++PIIVLS++ED VK AF G NDY+VKLPDT Sbjct: 66 ILQDLVMPGIDGLTLVRQYRANPATRNVPIIVLSTREDPAVKSAAFTAGANDYLVKLPDT 125 Query: 135 IELIARIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTSIANRRYFD 194 IEL+ARIRYHSRSY NLLQRD AYRALR+SQQQL ++N ELQRLTN+DGLT +ANRRYFD Sbjct: 126 IELVARIRYHSRSYVNLLQRDEAYRALRQSQQQLLETNLELQRLTNSDGLTGLANRRYFD 185 Query: 195 DYLNAEWKRAKRVQQEISLLLIDVDNFKLYNDNYGHVAGNSXLRRRRVRGHPAGHRCRR- 253 +Y +AEWKRA+R Q +SLL+IDVD+FKLYND YGH+AG++ L++ GH RR Sbjct: 186 EYFSAEWKRAEREQSSLSLLMIDVDDFKLYNDTYGHLAGDTALKQ---VAESIGHFARRP 242 Query: 254 ---CARCGRE 260 AR G E Sbjct: 243 TDLAARIGGE 252 >ref|YP_297849.1| response regulator receiver modulated diguanylate cyclase [Ralstonia eutropha JMP134] gb|AAZ63005.1| response regulator receiver modulated diguanylate cyclase [Ralstonia eutropha JMP134] Length = 359 Score = 334 bits (857), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 155/215 (72%), Positives = 187/215 (86%) Query: 25 YKIMVLLVDDQAMVGEAIRRALLTESDIDFHFCPRAEDALGIAEKTQPTVILQDLVMPGV 84 Y +MVLLVDDQAM+GEA+RRAL +E DIDFH+C +DA+ +AE+T+PTVILQDLVMPGV Sbjct: 36 YPVMVLLVDDQAMIGEAVRRALASEPDIDFHYCATPDDAVAVAERTRPTVILQDLVMPGV 95 Query: 85 DGLTLVKQYRSNPLTMDIPIIVLSSKEDALVKRDAFATGVNDYMVKLPDTIELIARIRYH 144 DGLTLV++YR N T DIPIIVLS+KE+A +K AF+ G NDY+VKLPD+IEL+ARIRYH Sbjct: 96 DGLTLVRRYRDNAATRDIPIIVLSTKEEAAMKSAAFSAGANDYLVKLPDSIELVARIRYH 155 Query: 145 SRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTSIANRRYFDDYLNAEWKRA 204 SRSY NLLQRD AYRALR+SQQQL ++N ELQRLTN+DGLT ++NRRYFD+YLNAEWKRA Sbjct: 156 SRSYLNLLQRDEAYRALRQSQQQLLETNLELQRLTNSDGLTGLSNRRYFDEYLNAEWKRA 215 Query: 205 KRVQQEISLLLIDVDNFKLYNDNYGHVAGNSXLRR 239 +R Q +++LL+IDVD FK YND YGHVAG+ LRR Sbjct: 216 QREQSQLALLMIDVDAFKAYNDTYGHVAGDEVLRR 250 >ref|YP_586104.1| response regulator of a two-component system [Cupriavidus metallidurans CH34] gb|ABF10835.1| putative response regulator of a two-component system [Cupriavidus metallidurans CH34] Length = 335 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 156/216 (72%), Positives = 187/216 (86%) Query: 24 DYKIMVLLVDDQAMVGEAIRRALLTESDIDFHFCPRAEDALGIAEKTQPTVILQDLVMPG 83 +Y MVLLVDDQA++GEAIRRAL +ESDIDFH+C + E+A+ +AE+T+PTVILQDLVMPG Sbjct: 15 EYPAMVLLVDDQAIIGEAIRRALASESDIDFHYCSQPEEAVTVAERTKPTVILQDLVMPG 74 Query: 84 VDGLTLVKQYRSNPLTMDIPIIVLSSKEDALVKRDAFATGVNDYMVKLPDTIELIARIRY 143 DGLTLV++YR N T DIPIIVLS+KE+ +K AFA G NDY+VKLPD+IELIARIRY Sbjct: 75 TDGLTLVRRYRENATTRDIPIIVLSTKEEPTMKSAAFAAGANDYLVKLPDSIELIARIRY 134 Query: 144 HSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTSIANRRYFDDYLNAEWKR 203 HSRSY NLLQRD AYRALR+SQQQL ++N ELQRLTN+DGLTS++NRRYFD+YL AEWKR Sbjct: 135 HSRSYLNLLQRDEAYRALRQSQQQLLETNLELQRLTNSDGLTSLSNRRYFDEYLGAEWKR 194 Query: 204 AKRVQQEISLLLIDVDNFKLYNDNYGHVAGNSXLRR 239 A+R Q +++LL+IDVD FK YND YGHVAG+ LRR Sbjct: 195 AQREQTQLALLMIDVDAFKGYNDTYGHVAGDEVLRR 230