BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0106.p (453 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium s... 722 0.0 ref|YP_003776414.1| two component hybrid sensor histidine kinase... 685 0.0 ref|YP_004753021.1| CheA signal transduction histidine kinase [C... 638 0.0 ref|ZP_03129652.1| CheA signal transduction histidine kinase [Ch... 602 e-170 ref|ZP_06840446.1| CheA signal transduction histidine kinase [Bu... 601 e-170 >ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89022.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/453 (82%), Positives = 411/453 (90%) Query: 1 VRDVGHALGKSVRLDIVGHATRIDRDILEKLDAPIGHLLRNAVDHGIESPQERLQAGKPE 60 VRDVGHALGKSVRL+I+G+AT+IDRDILEKL+APIGHLLRNA+DHGIE+PQ+R AGKPE Sbjct: 304 VRDVGHALGKSVRLEIIGNATQIDRDILEKLEAPIGHLLRNAIDHGIENPQQRKAAGKPE 363 Query: 61 QGRITLEARHSAGMLQVNVSDDGAGIDMAQLKKAIVARRLSTEDIVARLSEAELLEFLLL 120 QG ITLEARHSAGML VNVSDDGAGID+ QL+ I+ R+LS D VA+LSEAELLEFLLL Sbjct: 364 QGLITLEARHSAGMLLVNVSDDGAGIDLDQLRATIIERKLSNADTVAQLSEAELLEFLLL 423 Query: 121 PGFSLRDTVTDISGRGVGLDVVADMLKQVRGTVRIASTAGQGTRFQLQLPLTLSVIRSLL 180 P FSLRDTVTDISGRGVGLDVV+DMLKQVRGT+RI+ST QGTRFQ+QLPLTLSVIRSLL Sbjct: 424 PSFSLRDTVTDISGRGVGLDVVSDMLKQVRGTIRISSTPQQGTRFQMQLPLTLSVIRSLL 483 Query: 181 VSIGGEPYAFPLAYVNRTLALQREELDMLEGYQHFSFEGRQIGLVSAHQILQKGELRAKG 240 V+I EPYAFPLAYVNRTL L+R++L MLEG QHF+F+GRQIGLVSAHQILQKGELRAK Sbjct: 484 VTINEEPYAFPLAYVNRTLELRRDQLAMLEGQQHFTFDGRQIGLVSAHQILQKGELRAKD 543 Query: 241 ESVMVVVIGDNEHTYGLAVDRFLGERMLVVQALDARLGKIPNVQAGALMEDGAPVLILDV 300 + V VVVIGD+EHTYGLAVD FLGERMLVVQ LD RLGK+PNV AGALMEDG PVLILDV Sbjct: 544 DLVSVVVIGDHEHTYGLAVDDFLGERMLVVQPLDNRLGKVPNVLAGALMEDGDPVLILDV 603 Query: 301 ADMLRSVEKLSLAGQLENVGQATAEDTGVARKKVLVVDDSLTVRELERKLLSNRGYQVTV 360 ADM+RSVEKL+ AG+L+ V V RKKVLVVDDSLTVRELERKLLSN GYQV V Sbjct: 604 ADMVRSVEKLTAAGKLDVVQHGGKNLNDVKRKKVLVVDDSLTVRELERKLLSNCGYQVVV 663 Query: 361 AVDGMDGWNAVRTEQFDLVITDIDMPRMDGIELVTLIRQASHLRSLPVMIVSYKDREEDR 420 AVDGMDGWNAVRTE FDLVITDIDMPRMDGIELV+LIRQA++L+SLPVMIVSYKDREEDR Sbjct: 664 AVDGMDGWNAVRTEHFDLVITDIDMPRMDGIELVSLIRQAANLQSLPVMIVSYKDREEDR 723 Query: 421 QRGLEAGADHYFTKSSFHDETLLQAVVDLIGAA 453 QRGL+AGAD+YFTKSSFHDE+LLQAVVDLIGAA Sbjct: 724 QRGLDAGADYYFTKSSFHDESLLQAVVDLIGAA 756 >ref|YP_003776414.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64506.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 775 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/454 (79%), Positives = 397/454 (87%), Gaps = 1/454 (0%) Query: 1 VRDVGHALGKSVRLDIVGHATRIDRDILEKLDAPIGHLLRNAVDHGIESPQERLQAGKPE 60 VRDVG+ LGKSVRLDIVG+ T+IDRDILEKL+APIGHLLRNAVDHGIES +R AGKPE Sbjct: 321 VRDVGNTLGKSVRLDIVGNTTQIDRDILEKLEAPIGHLLRNAVDHGIESSAQRRAAGKPE 380 Query: 61 QGRITLEARHSAGMLQVNVSDDGAGIDMAQLKKAIVARRLSTEDIVARLSEAELLEFLLL 120 QG I LEARHSAGML + V+DDGAGID+ Q++ A+VAR LS ++ RLSEAELLEFLLL Sbjct: 381 QGVIRLEARHSAGMLLIEVADDGAGIDIEQVRSAVVARGLSNQETAERLSEAELLEFLLL 440 Query: 121 PGFSLRDTVTDISGRGVGLDVVADMLKQVRGTVRIASTAGQGTRFQLQLPLTLSVIRSLL 180 P FSLRDTVT+ISGRGVGLDVVADMLKQVRGT+RI + AGQG+RF +QLPLTLSVIRSLL Sbjct: 441 PSFSLRDTVTEISGRGVGLDVVADMLKQVRGTIRITTQAGQGSRFLMQLPLTLSVIRSLL 500 Query: 181 VSIGGEPYAFPLAYVNRTLALQREELDMLEGYQHFSFEGRQIGLVSAHQILQKGELRAKG 240 V I GEPYAFPLAYVNRTL L E L LEGYQHFS GRQ+GLVSAHQ+LQKG+ R++ Sbjct: 501 VDIAGEPYAFPLAYVNRTLRLPAEALQTLEGYQHFSHGGRQVGLVSAHQVLQKGQWRSRD 560 Query: 241 ESVMVVVIGDNEHTYGLAVDRFLGERMLVVQALDARLGKIPNVQAGALMEDGAPVLILDV 300 SV VVVIG+ EHTYGLAVD FLGERMLVVQ LD RLGKI +V AGALMEDG P+LILDV Sbjct: 561 GSVCVVVIGEQEHTYGLAVDAFLGERMLVVQPLDPRLGKIADVLAGALMEDGTPLLILDV 620 Query: 301 ADMLRSVEKLSLAGQLENVGQ-ATAEDTGVARKKVLVVDDSLTVRELERKLLSNRGYQVT 359 ADMLR+VEKL+ +G+L+ V Q A T ARKKVLVVDDSLTVRELERKLL+NRGYQVT Sbjct: 621 ADMLRTVEKLTSSGRLQTVDQDGAAPTTTAARKKVLVVDDSLTVRELERKLLTNRGYQVT 680 Query: 360 VAVDGMDGWNAVRTEQFDLVITDIDMPRMDGIELVTLIRQASHLRSLPVMIVSYKDREED 419 VAVDGMDGWNAVR + FDLVITDIDMPRMDGIELV+LIR A++L+SLPVMIVSYKDREED Sbjct: 681 VAVDGMDGWNAVRADSFDLVITDIDMPRMDGIELVSLIRGAANLQSLPVMIVSYKDREED 740 Query: 420 RQRGLEAGADHYFTKSSFHDETLLQAVVDLIGAA 453 RQRGLEAGADHYFTKSSFHDE+LLQAV DLIG A Sbjct: 741 RQRGLEAGADHYFTKSSFHDESLLQAVTDLIGEA 774 >ref|YP_004753021.1| CheA signal transduction histidine kinase [Collimonas fungivorans Ter331] gb|AEK62198.1| CheA signal transduction histidine kinase [Collimonas fungivorans Ter331] Length = 781 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/453 (69%), Positives = 374/453 (82%) Query: 1 VRDVGHALGKSVRLDIVGHATRIDRDILEKLDAPIGHLLRNAVDHGIESPQERLQAGKPE 60 VRD+G LGK V+L+I G T++DRDILE+LDAP+ HLLRNA+DHGIE+PQ+R AGK E Sbjct: 327 VRDLGRTLGKQVKLEINGQTTQVDRDILEQLDAPLVHLLRNALDHGIETPQQRRAAGKDE 386 Query: 61 QGRITLEARHSAGMLQVNVSDDGAGIDMAQLKKAIVARRLSTEDIVARLSEAELLEFLLL 120 +G +TL ARH AG+LQ+ +SDDG G+D+ QL+ A+V R L RLS+AELL FLLL Sbjct: 387 EGLVTLTARHHAGLLQITISDDGNGVDLEQLRAAVVRRGLVDHATAGRLSDAELLHFLLL 446 Query: 121 PGFSLRDTVTDISGRGVGLDVVADMLKQVRGTVRIASTAGQGTRFQLQLPLTLSVIRSLL 180 PGFS+RDTVT+ISGRGVGLDVV +MLK++RGTV+I S AG G RFQLQLPLTLS++RSLL Sbjct: 447 PGFSMRDTVTEISGRGVGLDVVHNMLKRMRGTVQIFSEAGHGMRFQLQLPLTLSLVRSLL 506 Query: 181 VSIGGEPYAFPLAYVNRTLALQREELDMLEGYQHFSFEGRQIGLVSAHQILQKGELRAKG 240 VSIGGEPYAFPLAYVNRT+ L+R +++ LEG QHF+FE RQIGLV+A QILQ G+ A G Sbjct: 507 VSIGGEPYAFPLAYVNRTMILERSQIESLEGRQHFAFEERQIGLVAASQILQSGDAAASG 566 Query: 241 ESVMVVVIGDNEHTYGLAVDRFLGERMLVVQALDARLGKIPNVQAGALMEDGAPVLILDV 300 + + +VVIGD TYGL VDR LGE MLVVQ LDARLGKI +V A ALMEDG+PVLILDV Sbjct: 567 DRIALVVIGDQTQTYGLQVDRLLGEHMLVVQPLDARLGKIKDVAAAALMEDGSPVLILDV 626 Query: 301 ADMLRSVEKLSLAGQLENVGQATAEDTGVARKKVLVVDDSLTVRELERKLLSNRGYQVTV 360 ADML SVEKL GQL + +++ K+VLVVDDSLTVRELERKLLSNRGY V V Sbjct: 627 ADMLNSVEKLIAQGQLSKIQGNSSQQQVQTSKRVLVVDDSLTVRELERKLLSNRGYTVRV 686 Query: 361 AVDGMDGWNAVRTEQFDLVITDIDMPRMDGIELVTLIRQASHLRSLPVMIVSYKDREEDR 420 AVDGMDGWNA+R+E FDLV+TDIDMPRMDGIELVTLI++ L+++PVMIVSYKDR+EDR Sbjct: 687 AVDGMDGWNALRSEPFDLVVTDIDMPRMDGIELVTLIKKNLQLKAIPVMIVSYKDRQEDR 746 Query: 421 QRGLEAGADHYFTKSSFHDETLLQAVVDLIGAA 453 QRGLEAGAD+Y K+SFHDETLLQAV DLIG A Sbjct: 747 QRGLEAGADYYLAKASFHDETLLQAVEDLIGEA 779 >ref|ZP_03129652.1| CheA signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gb|EDY19641.1| CheA signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 741 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 292/451 (64%), Positives = 366/451 (81%) Query: 1 VRDVGHALGKSVRLDIVGHATRIDRDILEKLDAPIGHLLRNAVDHGIESPQERLQAGKPE 60 VRD+G +LGK VRL+IVG T++DRDILEKL+AP+ HLLRNAVDHGI+ P+ERL AGKP Sbjct: 289 VRDIGRSLGKEVRLEIVGEQTQVDRDILEKLEAPLNHLLRNAVDHGIDFPEERLAAGKPR 348 Query: 61 QGRITLEARHSAGMLQVNVSDDGAGIDMAQLKKAIVARRLSTEDIVARLSEAELLEFLLL 120 +G + LEARHSAGML + V DDG GID+ ++ A+VAR+L+ E+ A++S+AELLEFL L Sbjct: 349 EGTVWLEARHSAGMLLITVRDDGRGIDVESVRGAVVARKLTNEETAAKMSDAELLEFLFL 408 Query: 121 PGFSLRDTVTDISGRGVGLDVVADMLKQVRGTVRIASTAGQGTRFQLQLPLTLSVIRSLL 180 PGF+++ VT++SGRGVGLDVV +KQ+RGT+R S G+GT QLQLPLTLSV+R+L+ Sbjct: 409 PGFTMKTEVTEVSGRGVGLDVVQVTMKQLRGTLRTTSELGRGTAIQLQLPLTLSVLRALV 468 Query: 181 VSIGGEPYAFPLAYVNRTLALQREELDMLEGYQHFSFEGRQIGLVSAHQILQKGELRAKG 240 V I GEPY PLA + RTL L + +++MLEG HF+F+G++IGLV+A Q+ +KGE G Sbjct: 469 VEIAGEPYGIPLAAITRTLKLGKGKVEMLEGRPHFAFDGQRIGLVTARQVFEKGESPLSG 528 Query: 241 ESVMVVVIGDNEHTYGLAVDRFLGERMLVVQALDARLGKIPNVQAGALMEDGAPVLILDV 300 + + VV+IGD + YGL +DRFLGER LVVQ LD+RLGK+PN+ AGAL +DGAP+LI DV Sbjct: 529 DELPVVIIGDRGNRYGLVLDRFLGERELVVQPLDSRLGKVPNISAGALADDGAPLLIADV 588 Query: 301 ADMLRSVEKLSLAGQLENVGQATAEDTGVARKKVLVVDDSLTVRELERKLLSNRGYQVTV 360 DMLRS+EKLS +G+LENV +++A RK+VLVVDDSLTVRELERKLL GY V + Sbjct: 589 EDMLRSIEKLSASGRLENVQRSSAGAQPARRKRVLVVDDSLTVRELERKLLEGHGYAVEI 648 Query: 361 AVDGMDGWNAVRTEQFDLVITDIDMPRMDGIELVTLIRQASHLRSLPVMIVSYKDREEDR 420 AVDGMDGWNAVRT DLVITD+DMPRMDGIELV+LIR+ +L+S P+MIVSYKDREEDR Sbjct: 649 AVDGMDGWNAVRTGDHDLVITDVDMPRMDGIELVSLIRKDPNLKSKPIMIVSYKDREEDR 708 Query: 421 QRGLEAGADHYFTKSSFHDETLLQAVVDLIG 451 RGLEAGAD+Y TK SFHDE+L+ +V DLIG Sbjct: 709 ARGLEAGADYYLTKGSFHDESLISSVADLIG 739 >ref|ZP_06840446.1| CheA signal transduction histidine kinase [Burkholderia sp. Ch1-1] gb|EFG72166.1| CheA signal transduction histidine kinase [Burkholderia sp. Ch1-1] Length = 796 Score = 601 bits (1550), Expect = e-170, Method: Compositional matrix adjust. Identities = 303/453 (66%), Positives = 364/453 (80%) Query: 1 VRDVGHALGKSVRLDIVGHATRIDRDILEKLDAPIGHLLRNAVDHGIESPQERLQAGKPE 60 VRDV +LGK VR +VG +T++DRDIL+ L+AP+GH+LRNA+DHGIE+P RL GKPE Sbjct: 342 VRDVARSLGKKVRWQLVGESTQVDRDILDLLEAPLGHMLRNALDHGIEAPAVRLARGKPE 401 Query: 61 QGRITLEARHSAGMLQVNVSDDGAGIDMAQLKKAIVARRLSTEDIVARLSEAELLEFLLL 120 +G +TL+ARH+AG L + VSDDGAGID+ L+ +IV ++L++E+ VARLSEAELLEFL L Sbjct: 402 EGTLTLDARHTAGALLITVSDDGAGIDLDALRASIVRKKLASEETVARLSEAELLEFLFL 461 Query: 121 PGFSLRDTVTDISGRGVGLDVVADMLKQVRGTVRIASTAGQGTRFQLQLPLTLSVIRSLL 180 PGFSLRD VT++SGRGVGLD V D++K+VRGTVRIA G GTR QLQLPLTLSVIRSLL Sbjct: 462 PGFSLRDQVTEVSGRGVGLDAVHDVVKRVRGTVRIAHEPGLGTRVQLQLPLTLSVIRSLL 521 Query: 181 VSIGGEPYAFPLAYVNRTLALQREELDMLEGYQHFSFEGRQIGLVSAHQILQKGELRAKG 240 + + GEPYA PLA+VNRTL + R E+++LEG+QH +F GR+IG+V+AHQIL G Sbjct: 522 IEVAGEPYAVPLAHVNRTLHVSRAEIELLEGHQHIAFSGRRIGVVTAHQILDTAPPADGG 581 Query: 241 ESVMVVVIGDNEHTYGLAVDRFLGERMLVVQALDARLGKIPNVQAGALMEDGAPVLILDV 300 ++V ++V+GD TYG+ VDRFLGERMLVVQ LD RLGKI N+ AGALME+G PVLI DV Sbjct: 582 DTVSMIVVGDGAQTYGVVVDRFLGERMLVVQPLDPRLGKIRNITAGALMENGDPVLIADV 641 Query: 301 ADMLRSVEKLSLAGQLENVGQATAEDTGVARKKVLVVDDSLTVRELERKLLSNRGYQVTV 360 D LRSVE+L G L + A A ++VLVVDDSLTVRELERKLL+ RGY VT+ Sbjct: 642 DDWLRSVERLVAGGDLRRMHNGVAHAAQRAARRVLVVDDSLTVRELERKLLATRGYDVTI 701 Query: 361 AVDGMDGWNAVRTEQFDLVITDIDMPRMDGIELVTLIRQASHLRSLPVMIVSYKDREEDR 420 AVDGMDGWNAVR E+FDLVITDIDMPRMDGIELVTLI++ L+SLPVMIVSYKDREEDR Sbjct: 702 AVDGMDGWNAVRGERFDLVITDIDMPRMDGIELVTLIKRDPQLQSLPVMIVSYKDREEDR 761 Query: 421 QRGLEAGADHYFTKSSFHDETLLQAVVDLIGAA 453 + GL AGAD+Y K SFHDE LL AV DLIG A Sbjct: 762 RAGLNAGADYYLAKGSFHDEALLDAVRDLIGEA 794