BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0105.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium s... 192 3e-47 ref|YP_003776414.1| two component hybrid sensor histidine kinase... 162 4e-38 ref|NP_252393.1| chemotaxis sensor/effector fusion protein [Pseu... 145 3e-33 ref|YP_004753021.1| CheA signal transduction histidine kinase [C... 145 5e-33 ref|YP_001346817.1| putative chemotaxis sensor/effector fusion p... 144 1e-32 >ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89022.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 104/172 (60%), Positives = 123/172 (71%), Gaps = 9/172 (5%) Query: 1 MSSPDLQQMTMLELFRHEVESQVQVLNAGLLELERHAGDIDPGQLAEPLEACMRAAHSLK 60 MSSPDL QM+MLELFR E ESQ VL+ GLLELE++ + A+ LEACMRAAHSLK Sbjct: 1 MSSPDLSQMSMLELFRQEAESQTHVLSIGLLELEQNP------RSADQLEACMRAAHSLK 54 Query: 61 GAARIITLNAGVNVAHVMEDCFVLAQQGKLSLRRRQIDALFKGVDLLVRIANAPGGDETW 120 GAARII L AGV+VAHVMEDCFVLA++G+L L R+QID L GVDLL RIAN P DE+W Sbjct: 55 GAARIIGLAAGVDVAHVMEDCFVLARRGELLLHRKQIDVLLTGVDLLTRIANPPNNDESW 114 Query: 121 GDKEGKPEIDAFMLALSAAMTDDSEDQADELVDTTPVETAAIDIAIPAATAP 172 GD GKPEI AF+ L+ AM D D D DT + AA ++A+ A + P Sbjct: 115 GDHAGKPEITAFIAKLTTAMAD--PDGGDSSADTA-TDNAAGNLAVEAESQP 163 >ref|YP_003776414.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64506.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 775 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 81/141 (57%), Positives = 99/141 (70%), Gaps = 6/141 (4%) Query: 1 MSSPDLQQMTMLELFRHEVESQVQVLNAGLLELERHAGDIDPGQLAEPLEACMRAAHSLK 60 MS+PDL QM+ML+LFR E ESQ+ LNA LL LE+ A+ LEACMRA HSLK Sbjct: 1 MSTPDLSQMSMLDLFRFEAESQIAQLNASLLALEQQP------TAADHLEACMRAGHSLK 54 Query: 61 GAARIITLNAGVNVAHVMEDCFVLAQQGKLSLRRRQIDALFKGVDLLVRIANAPGGDETW 120 GAARI+ L V VAHV+EDCFVLAQQG+L L+++ ID L +G DLL RIA P GDE W Sbjct: 55 GAARIVGLEPAVKVAHVLEDCFVLAQQGRLLLQKKHIDVLLRGADLLARIAAPPDGDEAW 114 Query: 121 GDKEGKPEIDAFMLALSAAMT 141 D G E+ AF++AL + M+ Sbjct: 115 ADHAGSAEVQAFLVALPSVMS 135 >ref|NP_252393.1| chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PAO1] ref|ZP_01367136.1| hypothetical protein PaerPA_01004287 [Pseudomonas aeruginosa PACS2] ref|ZP_04929937.1| hypothetical protein PACG_02617 [Pseudomonas aeruginosa C3719] gb|AAG07091.1|AE004789_11 probable chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PAO1] gb|EAZ54056.1| hypothetical protein PACG_02617 [Pseudomonas aeruginosa C3719] gb|EGM16509.1| chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa 138244] gb|AEO73729.1| putative chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa M18] Length = 769 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/156 (52%), Positives = 100/156 (64%), Gaps = 6/156 (3%) Query: 1 MSSPDLQQMTMLELFRHEVESQVQVLNAGLLELERHAGDIDPGQLAEPLEACMRAAHSLK 60 M+ ++ ++LELFR E E+Q QVLNAGL+ LER P Q A+ LEACMRAAHSLK Sbjct: 1 MTPDQMRDASLLELFRLEAEAQTQVLNAGLMALER-----SPTQ-ADQLEACMRAAHSLK 54 Query: 61 GAARIITLNAGVNVAHVMEDCFVLAQQGKLSLRRRQIDALFKGVDLLVRIANAPGGDETW 120 GAARI+ L+AGV VAHVMEDC V AQ G+L L+ IDAL +G DLL+RI P GD W Sbjct: 55 GAARIVGLDAGVRVAHVMEDCLVEAQDGRLLLQSEHIDALLQGCDLLLRIGTPPAGDAGW 114 Query: 121 GDKEGKPEIDAFMLALSAAMTDDSEDQADELVDTTP 156 + G+ EID +L L + EL TTP Sbjct: 115 AEGAGREEIDGLVLRLEGLVRSGLPLARAELPATTP 150 >ref|YP_004753021.1| CheA signal transduction histidine kinase [Collimonas fungivorans Ter331] gb|AEK62198.1| CheA signal transduction histidine kinase [Collimonas fungivorans Ter331] Length = 781 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/179 (46%), Positives = 118/179 (65%), Gaps = 8/179 (4%) Query: 1 MSSPDLQQMTMLELFRHEVESQVQVLNAGLLELERHAGDIDPGQLAEPLEACMRAAHSLK 60 M++ +L+ +ML+LFR EVE+Q QV+++GLL +ER A +P Q + LEACMRAAHS+K Sbjct: 1 MNADELRDASMLDLFRMEVETQAQVMSSGLLAIER-APQHEPPQ--QQLEACMRAAHSIK 57 Query: 61 GAARIITLNAGVNVAHVMEDCFVLAQQGKLSLRRRQIDALFKGVDLLVRIANAPGGDETW 120 GAARI+ + AGV+V HVMEDCFV AQQGK+ L R+ID L GVDLL RIA + E W Sbjct: 58 GAARIVGVQAGVDVTHVMEDCFVWAQQGKVQLGPRRIDLLLHGVDLLQRIAASAEDLELW 117 Query: 121 GDKEGKPEIDAFMLALSAAM--TDDSEDQADELVDTTPVETAAIDIAIPAATAPADSRD 177 G+ EI+ F+ L ++ DD +A+ + + P ++ I+ PA A A++ D Sbjct: 118 QAGSGRKEIETFLRGLETSLQQADDRAREAESVPELVPF---SVPISEPAIVAAAETDD 173 >ref|YP_001346817.1| putative chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PA7] gb|ABR85155.1| probable chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PA7] Length = 764 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/133 (57%), Positives = 92/133 (69%), Gaps = 6/133 (4%) Query: 1 MSSPDLQQMTMLELFRHEVESQVQVLNAGLLELERHAGDIDPGQLAEPLEACMRAAHSLK 60 M+ ++ ++LELFR E E+Q QVLNAGL+ LER P Q A+ LEACMRAAHSLK Sbjct: 1 MTPDQMRDASLLELFRLEAEAQTQVLNAGLMALER-----SPTQ-ADQLEACMRAAHSLK 54 Query: 61 GAARIITLNAGVNVAHVMEDCFVLAQQGKLSLRRRQIDALFKGVDLLVRIANAPGGDETW 120 GAARI+ L+AGV VAHVMEDC V AQ G+L L+ IDAL +G DLL+RI P GD W Sbjct: 55 GAARIVGLDAGVRVAHVMEDCLVEAQDGRLLLQSEHIDALLQGCDLLLRIGTPPAGDAGW 114 Query: 121 GDKEGKPEIDAFM 133 D G+ EID + Sbjct: 115 ADGAGREEIDGLV 127