BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0095.p (368 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001099299.1| hypothetical protein HEAR0990 [Herminiimonas... 435 e-120 ref|YP_003776734.1| transmembrane protein [Herbaspirillum serope... 432 e-119 ref|YP_001352818.1| hypothetical protein mma_1128 [Janthinobacte... 408 e-112 ref|YP_002980513.1| hypothetical protein Rpic12D_0536 [Ralstonia... 324 1e-86 ref|ZP_07675489.1| conserved hypothetical protein [Ralstonia sp.... 324 1e-86 >ref|YP_001099299.1| hypothetical protein HEAR0990 [Herminiimonas arsenicoxydans] emb|CAL61172.1| conserved hypothetical protein; putative membrane protein [Herminiimonas arsenicoxydans] Length = 361 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 219/341 (64%), Positives = 266/341 (78%), Gaps = 6/341 (1%) Query: 34 FSFSGRGSEYFRIWIVNLLLSVVTFGIYSAWAKVRRLRYFYDNTTVAGTSFEYHGNPIAI 93 FSFSG GSEYFRIWIVNLLLS+VT GIYSAWAKVRR +YFY++T+VAG+SFEYHGNP+AI Sbjct: 21 FSFSGSGSEYFRIWIVNLLLSIVTLGIYSAWAKVRRSKYFYNSTSVAGSSFEYHGNPVAI 80 Query: 94 LKGRIVAVVLLFGYQFAFSYNPLLGMIALLVFALAVPWLIWRSLQFKLYNSSYRGIRFGF 153 LKGRIVAV+++ Y AF + L G++ ++ AL PWLIW+SLQFKLYNSSYRGIRFGF Sbjct: 81 LKGRIVAVIMIVIYNLAFEMSGLTGLLIIIAMALLAPWLIWKSLQFKLYNSSYRGIRFGF 140 Query: 154 RGNAGGAYKAYLLLPVLTVLTLYLLTPFTHQRIKRFQHNESRFGASHFSFDGSVGSFYKT 213 G Y YL P+L LTL LL PF HQR+K+FQH ESRFGASHFSF G+VGSFYK Sbjct: 141 AGTLSRVYTVYLAFPILAALTLSLLLPFAHQRMKKFQHEESRFGASHFSFTGTVGSFYKA 200 Query: 214 YLIGFGIYLAGFIAIVVALGGT--ALIAAGR----DFGAHSVFSFMLLFFALYAWTFLMY 267 YL+ F I+LAG IAI +ALGGT ++IAAG + G+ + + + ALY W FL++ Sbjct: 201 YLLVFIIWLAGCIAISLALGGTLFSMIAAGGMSHIESGSAGMLAITVFILALYVWMFLIF 260 Query: 268 PLFLTLLQNLIWNHTRLGEHRFHSAMRWPRMMFIAFTNIVGIVATLGLFTPFAQIRALRY 327 P+F TL+QNLIWN+TRL +H+FHS M+W M FIA TNI+ I+ TLGLF PFAQIRA+RY Sbjct: 261 PIFATLIQNLIWNNTRLDQHQFHSNMKWGTMAFIAVTNIIAIICTLGLFLPFAQIRAMRY 320 Query: 328 KIESMSLHAAGNLDEFIADNAAQGSAAGEGLSDLLDFDLSL 368 +++SMSL G+LD FIA AQ SA GEG++DLLDFDLSL Sbjct: 321 RVQSMSLTPDGSLDHFIAATQAQVSATGEGVADLLDFDLSL 361 >ref|YP_003776734.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64826.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 363 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 236/368 (64%), Positives = 286/368 (77%), Gaps = 5/368 (1%) Query: 1 MSDTFDPPGQPEPNQPVSFASLLPAQTGPSVEAFSFSGRGSEYFRIWIVNLLLSVVTFGI 60 M++ D P Q P F+++L EAFSFSGRG EYFRIWIVNLLLS+VT GI Sbjct: 1 MNEPSDLPSQATP----PFSTVLNTAAPVKPEAFSFSGRGGEYFRIWIVNLLLSIVTLGI 56 Query: 61 YSAWAKVRRLRYFYDNTTVAGTSFEYHGNPIAILKGRIVAVVLLFGYQFAFSYNPLLGMI 120 YSAWAKVRRLRYFYDNT+VAG SF+YHGNPIAILKGRI+AVVLL Y FA + +PLLG+ Sbjct: 57 YSAWAKVRRLRYFYDNTSVAGGSFDYHGNPIAILKGRIIAVVLLAVYNFAGAASPLLGLA 116 Query: 121 ALLVFALAVPWLIWRSLQFKLYNSSYRGIRFGFRGNAGGAYKAYLLLPVLTVLTLYLLTP 180 A L+ LA PWL+WRSLQFKLYN+SYRGIRFGFRG+ GGA + +L+ P+L ++L LL P Sbjct: 117 AALLLVLAGPWLLWRSLQFKLYNTSYRGIRFGFRGSLGGAARNFLMWPMLASISLGLLAP 176 Query: 181 FTHQRIKRFQHNESRFGASHFSFDGSVGSFYKTYLIGFGIYLAGFIAIVVALGGTALIAA 240 +QR KR+QH+E+RFGA+HFSF GSVG+FYKT+LIG G++L G I I V GG LI Sbjct: 177 LAYQRFKRYQHSEARFGATHFSFHGSVGAFYKTFLIGLGLWLGGIIVIFVGFGGITLIQM 236 Query: 241 GRDFGAHSVFSFMLLFFALYAWTFLMYPLFLTLLQNLIWNHTRLGEHRFHSAMRWPRMMF 300 G +VFS ML+ ALYAWTFL PL++TLLQNL+WN+TRLGEHRF S MRW R F Sbjct: 237 VHA-GTTAVFSLMLMVLALYAWTFLALPLWMTLLQNLVWNNTRLGEHRFQSDMRWGRTAF 295 Query: 301 IAFTNIVGIVATLGLFTPFAQIRALRYKIESMSLHAAGNLDEFIADNAAQGSAAGEGLSD 360 I FTN++G+V TLGL+TPFAQIR +RY+IES++L A +LD+F+A + A GSA GEGL D Sbjct: 296 IVFTNVLGVVFTLGLYTPFAQIRMMRYRIESLTLLPASSLDDFVASSEAHGSATGEGLGD 355 Query: 361 LLDFDLSL 368 LLDFDLS+ Sbjct: 356 LLDFDLSM 363 >ref|YP_001352818.1| hypothetical protein mma_1128 [Janthinobacterium sp. Marseille] gb|ABR89511.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 429 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 223/373 (59%), Positives = 277/373 (74%), Gaps = 9/373 (2%) Query: 4 TFDPPGQPEPNQPVSFASLLPAQTGPSVEA--FSFSGRGSEYFRIWIVNLLLSVVTFGIY 61 T +P G + V + + + PS FSFSG GSEYFRIWIVNLL S++T GIY Sbjct: 58 TINPQGAKMTDAAV-VHEIPESNSHPSDTPIRFSFSGTGSEYFRIWIVNLLFSILTLGIY 116 Query: 62 SAWAKVRRLRYFYDNTTVAGTSFEYHGNPIAILKGRIVAVVLLFGYQFAFSYNPLLGMIA 121 SAWAKVRR RYFY +T+VAGTSFEYHGNP+AILKGRI+AV+L+ Y AF + L+G++ Sbjct: 117 SAWAKVRRTRYFYGSTSVAGTSFEYHGNPVAILKGRIIAVLLIIIYNIAFEMSDLIGLLM 176 Query: 122 LLVFALAVPWLIWRSLQFKLYNSSYRGIRFGFRGNAGGAYKAYLLLPVLTVLTLYLLTPF 181 LL+ PWLIW+SLQFKLYNSSYRGIRFGFRG Y YL LP+LT+L+ +LLTPF Sbjct: 177 LLLVMALTPWLIWKSLQFKLYNSSYRGIRFGFRGALKQIYWVYLALPILTMLSAFLLTPF 236 Query: 182 THQRIKRFQHNESRFGASHFSFDGSVGSFYKTYLIGFGIYLAGFIAIVVALGGT--ALIA 239 THQR+K+FQH ESRFG SHFSF GSVGSFY YL+ F I+L G IAI V LGG+ A+I Sbjct: 237 THQRVKKFQHQESRFGTSHFSFSGSVGSFYLAYLLVFVIWLVGVIAISVTLGGSLFAIIT 296 Query: 240 A---GRDFGAHSVFSFMLLFF-ALYAWTFLMYPLFLTLLQNLIWNHTRLGEHRFHSAMRW 295 A R+ + + + ++LF LY W FL++P+F TL+QNLIWNHT+LG+HRF S M+W Sbjct: 297 ADVMDREAASAAGAAGIVLFLGVLYVWMFLLFPIFATLIQNLIWNHTQLGQHRFLSDMKW 356 Query: 296 PRMMFIAFTNIVGIVATLGLFTPFAQIRALRYKIESMSLHAAGNLDEFIADNAAQGSAAG 355 RM FI TNI+GI+ TLGLF PFAQIRA++Y++E M+L G+L+ FIA + Q SA G Sbjct: 357 TRMAFITITNIIGIICTLGLFLPFAQIRAMKYRVECMALQPNGSLENFIAASQQQVSATG 416 Query: 356 EGLSDLLDFDLSL 368 EG++DLLDFDLSL Sbjct: 417 EGVADLLDFDLSL 429 >ref|YP_002980513.1| hypothetical protein Rpic12D_0536 [Ralstonia pickettii 12D] gb|ACS61841.1| protein of unknown function DUF898 transmembrane [Ralstonia pickettii 12D] Length = 360 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 169/346 (48%), Positives = 226/346 (65%), Gaps = 3/346 (0%) Query: 24 PAQTGPSVEAFSFSGRGSEYFRIWIVNLLLSVVTFGIYSAWAKVRRLRYFYDNTTVAGTS 83 P P F+G GSEYFRIWIVNLLL++VT GIYSAWAKVR L+YFY NT +AG+S Sbjct: 17 PTAAAPQPLRLRFTGSGSEYFRIWIVNLLLTIVTLGIYSAWAKVRTLQYFYRNTQLAGSS 76 Query: 84 FEYHGNPIAILKGRIVAVVLLFGYQFAFSYNPLLGMIALLVFALAVPWLIWRSLQFKLYN 143 F+YHG+PIAILKGR + VL F + +PLLG+ L+V A A PWL+ RSL+F++ N Sbjct: 77 FDYHGSPIAILKGRAIIFVLAFAFNLLGHSSPLLGLALLIVMAAAFPWLLVRSLRFRMAN 136 Query: 144 SSYRGIRFGFRGNAGGAYKAYLLLPVLTVLTLYLLTPFTHQRIKRFQHNESRFGASHFSF 203 SSYRG+RF F G Y +L+ P+L+VL+LYLL P HQR KRFQH +RFG + F F Sbjct: 137 SSYRGLRFAFTGKDAEGYMVFLVWPILSVLSLYLLAPLAHQRFKRFQHTNTRFGTAQFDF 196 Query: 204 DGSVGSFYKTYLIGFGI-YLAGFIAIVVALGGTALIAAGRDFGAHSVFSFMLLFFALYAW 262 G+ G+FY YL FG+ LA +A +AL + D G +F F+++ +YA Sbjct: 197 SGTPGNFYGVYLRTFGLAILALVVASCLALLLGVSLHRAPDVG--QIFGFIVIGLFMYAA 254 Query: 263 TFLMYPLFLTLLQNLIWNHTRLGEHRFHSAMRWPRMMFIAFTNIVGIVATLGLFTPFAQI 322 + P FL+ LQNLIWN T LG HRF S + ++ +I +N V I+ T+GLFTPFA++ Sbjct: 255 MLFLTPYFLSRLQNLIWNQTTLGAHRFQSQVGAGKLFWIFVSNAVLILITIGLFTPFARV 314 Query: 323 RALRYKIESMSLHAAGNLDEFIADNAAQGSAAGEGLSDLLDFDLSL 368 R RYK++S+++ AAG+LD F+A A G+ D D D++L Sbjct: 315 RTARYKLDSVTMLAAGSLDTFVAGETTNVGALGDATVDWYDIDIAL 360 >ref|ZP_07675489.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gb|EFP66086.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 360 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 168/347 (48%), Positives = 225/347 (64%), Gaps = 5/347 (1%) Query: 24 PAQTGPSVEAFSFSGRGSEYFRIWIVNLLLSVVTFGIYSAWAKVRRLRYFYDNTTVAGTS 83 P P F+G GSEYFRIWIVNLLL++VT GIYSAWAKVR L+YFY NT +A +S Sbjct: 17 PTAAAPQPLRLRFTGSGSEYFRIWIVNLLLTIVTLGIYSAWAKVRTLQYFYRNTQLARSS 76 Query: 84 FEYHGNPIAILKGRIVAVVLLFGYQFAFSYNPLLGMIALLVFALAVPWLIWRSLQFKLYN 143 F+YHG+PIAILKGR + VL F + +PLLG+ L+V A A PWL+ RSL+F++ N Sbjct: 77 FDYHGSPIAILKGRAIIFVLAFAFNLLGHSSPLLGLALLIVMAAAFPWLLVRSLRFRMAN 136 Query: 144 SSYRGIRFGFRGNAGGAYKAYLLLPVLTVLTLYLLTPFTHQRIKRFQHNESRFGASHFSF 203 SSYRG+RF F G Y +L+ P+L+VL+LYLL P HQR KRFQH +RFG + F F Sbjct: 137 SSYRGLRFAFTGKDAEGYMVFLVWPILSVLSLYLLAPLAHQRFKRFQHKNTRFGTAQFDF 196 Query: 204 DGSVGSFYKTYLIGFGIYLAGFIAIVVALGGTALIAAG--RDFGAHSVFSFMLLFFALYA 261 G+ G+FY YL FG+ +A+VVA L+ R +F F+++ +YA Sbjct: 197 SGTPGNFYGVYLRTFGL---AILALVVASCLALLLGVSLHRAPNVGQIFGFIVIGLFMYA 253 Query: 262 WTFLMYPLFLTLLQNLIWNHTRLGEHRFHSAMRWPRMMFIAFTNIVGIVATLGLFTPFAQ 321 + P FL+ LQNLIWNHT LG HRF S + ++ +I +N V I+ T+GLFTPFA+ Sbjct: 254 AMLFLTPYFLSRLQNLIWNHTTLGAHRFQSQVGAGKLFWIFVSNAVLILITIGLFTPFAR 313 Query: 322 IRALRYKIESMSLHAAGNLDEFIADNAAQGSAAGEGLSDLLDFDLSL 368 +R RYK++S+++ AAG+LD F+A A G+ D D D++L Sbjct: 314 VRTARYKLDSVTMLAAGSLDTFVAGETTNVGALGDATVDWYDIDIAL 360