BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0092.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752718.1| putative transcriptional regulator [Collimon... 303 1e-80 gb|EGP46705.1| TetR family regulatory protein 29 [Achromobacter ... 293 1e-77 ref|ZP_06685004.1| TetR family transcriptional regulator [Achrom... 289 2e-76 gb|EFV82130.1| TetR-family transcriptional regulator [Achromobac... 288 3e-76 ref|YP_003982347.1| TetR family transcriptional regulator [Achro... 284 7e-75 >ref|YP_004752718.1| putative transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61895.1| putative transcriptional regulator for fatty acid degradation FadP, TetR family [Collimonas fungivorans Ter331] Length = 202 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 142/201 (70%), Positives = 170/201 (84%), Gaps = 1/201 (0%) Query: 6 TRTAKSELTLAAIVDTALEIAANEGLESLSLGEVAKRLNISKSGVFSRVGSREALQQAVL 65 T T KSELTLAAIV+TAL++ A +GLESLSLGEVAKRL ISKSGVFSRVGSREAL +AVL Sbjct: 3 THTEKSELTLAAIVNTALDMVATQGLESLSLGEVAKRLGISKSGVFSRVGSREALHEAVL 62 Query: 66 DEFDRRFVEEIFKPAMALPRGLPRLNKMIRNWLQRTNNDVSCLYIAGAFEYDDVLDSPMR 125 +EFDRRF ++F+PAM RGLPRLN ++ NW+ RT N C+Y+AGAFEYDDV D+PMR Sbjct: 63 NEFDRRFSADVFEPAMTQARGLPRLNALVMNWITRTCNVTGCIYVAGAFEYDDV-DTPMR 121 Query: 126 DRIKKNILQWRGMLHRTIEQALEEGQLRPDTDPQQLVFELYCLMVGLMHDARFLRDPQAL 185 +R++ N+L+WRG+L R I QAL+ G LRPDTDP+QL FE+Y LMVGLMHDARFLRDP+A Sbjct: 122 ERLQHNVLRWRGVLRRAIIQALDAGHLRPDTDPEQLAFEIYSLMVGLMHDARFLRDPKAP 181 Query: 186 ERVQTAYDRLISTYRSFNYHG 206 +RV+ AY+RL STYRSFNYH Sbjct: 182 DRVRNAYERLTSTYRSFNYHA 202 >gb|EGP46705.1| TetR family regulatory protein 29 [Achromobacter xylosoxidans AXX-A] Length = 205 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 140/202 (69%), Positives = 172/202 (85%), Gaps = 4/202 (1%) Query: 6 TRTAKSELTLAAIVDTALEIAANEGLESLSLGEVAKRLNISKSGVFSRVGSREALQQAVL 65 +T KSELT AAIVD AL++AA +GLESLSLG+VAKRL+ISKSGVFSRVGSREALQQAVL Sbjct: 3 AKTEKSELTFAAIVDAALDMAAAQGLESLSLGQVAKRLDISKSGVFSRVGSREALQQAVL 62 Query: 66 DEFDRRFVEEIFKPAMALPRGLPRLNKMIRNWLQRTNND---VSCLYIAGAFEYDDVLDS 122 DE++RRFVE +F PAMA PRGLPRLN ++ W++R N C+YIAGAFE+DDV +S Sbjct: 63 DEYERRFVEAVFTPAMAQPRGLPRLNALMSLWIERACNVELLTGCIYIAGAFEFDDV-ES 121 Query: 123 PMRDRIKKNILQWRGMLHRTIEQALEEGQLRPDTDPQQLVFELYCLMVGLMHDARFLRDP 182 P+R+ ++ N+ +WRG++ RT+ QAL+EG LRPDTDP+QLVFE+Y LM+GLMHDARFLRDP Sbjct: 122 PLREILENNLRRWRGVMVRTVRQALDEGHLRPDTDPEQLVFEVYSLMIGLMHDARFLRDP 181 Query: 183 QALERVQTAYDRLISTYRSFNY 204 +A ERV+ AY+RLISTYRSF Y Sbjct: 182 KARERVRAAYERLISTYRSFKY 203 >ref|ZP_06685004.1| TetR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF78071.1| TetR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 216 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/204 (66%), Positives = 167/204 (81%), Gaps = 4/204 (1%) Query: 4 VITRTAKSELTLAAIVDTALEIAANEGLESLSLGEVAKRLNISKSGVFSRVGSREALQQA 63 + RT KSELT AAIVD AL++AA +G+ESLSLG++A+RL ISKSGVFSRVGS EALQQA Sbjct: 12 MTARTEKSELTFAAIVDAALDLAATQGMESLSLGQIARRLGISKSGVFSRVGSLEALQQA 71 Query: 64 VLDEFDRRFVEEIFKPAMALPRGLPRLNKMIRNWLQRTNN---DVSCLYIAGAFEYDDVL 120 VLDE+DRRFV +F PAMA PRGLPRLN ++ W++R +N C+Y+AGAFEYDDV Sbjct: 72 VLDEYDRRFVAAVFAPAMAHPRGLPRLNALVSLWVERASNVEMATGCVYVAGAFEYDDV- 130 Query: 121 DSPMRDRIKKNILQWRGMLHRTIEQALEEGQLRPDTDPQQLVFELYCLMVGLMHDARFLR 180 +SP+R ++ N+ +WR + RT++QALE G LRPDTDP+QLVFE+Y LM+GLMHDARFLR Sbjct: 131 ESPLRSLLEHNLRRWRAAMVRTVQQALEAGHLRPDTDPEQLVFEVYSLMIGLMHDARFLR 190 Query: 181 DPQALERVQTAYDRLISTYRSFNY 204 DP+A RV+ AYDRLISTYRSF Y Sbjct: 191 DPKAPARVRAAYDRLISTYRSFTY 214 >gb|EFV82130.1| TetR-family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 205 Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 137/202 (67%), Positives = 170/202 (84%), Gaps = 4/202 (1%) Query: 6 TRTAKSELTLAAIVDTALEIAANEGLESLSLGEVAKRLNISKSGVFSRVGSREALQQAVL 65 +T KSELT AAIVD AL++AA +GLESLSLG+VAKRL+ISKSGVFSRVGSREALQQAVL Sbjct: 3 AKTEKSELTFAAIVDAALDMAAAQGLESLSLGQVAKRLDISKSGVFSRVGSREALQQAVL 62 Query: 66 DEFDRRFVEEIFKPAMALPRGLPRLNKMIRNWLQRTNND---VSCLYIAGAFEYDDVLDS 122 DE++RRFV +F PAM PRGLPRLN ++ W++R N C+Y+AGAFE+DDV +S Sbjct: 63 DEYERRFVAAVFTPAMTRPRGLPRLNALMNLWIERACNVELLTGCIYVAGAFEFDDV-ES 121 Query: 123 PMRDRIKKNILQWRGMLHRTIEQALEEGQLRPDTDPQQLVFELYCLMVGLMHDARFLRDP 182 P+R+ ++ N+ +WRG++ RT+ QAL+EG LRPDTDP+QLVFE+Y LM+GLMHDARFLRDP Sbjct: 122 PLREILENNLRRWRGVMVRTVRQALDEGHLRPDTDPEQLVFEVYSLMIGLMHDARFLRDP 181 Query: 183 QALERVQTAYDRLISTYRSFNY 204 +A ERV+ AY+RLISTYRSF Y Sbjct: 182 KARERVRAAYERLISTYRSFKY 203 >ref|YP_003982347.1| TetR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP19632.1| bacterial regulatory protein, TetR family protein 29 [Achromobacter xylosoxidans A8] Length = 205 Score = 284 bits (726), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 135/204 (66%), Positives = 167/204 (81%), Gaps = 4/204 (1%) Query: 4 VITRTAKSELTLAAIVDTALEIAANEGLESLSLGEVAKRLNISKSGVFSRVGSREALQQA 63 + +T KSELT AAIVD AL++AA +G+ESLSLG+VAKRL ISKSGVFSRVGS EALQQA Sbjct: 1 MTAKTEKSELTFAAIVDAALDMAAAQGMESLSLGQVAKRLGISKSGVFSRVGSLEALQQA 60 Query: 64 VLDEFDRRFVEEIFKPAMALPRGLPRLNKMIRNWLQRTNND---VSCLYIAGAFEYDDVL 120 VLDE+DRRFV +F PAMA PRGLPRLN ++ W++R +N C+Y+AGAFEYDDV Sbjct: 61 VLDEYDRRFVGAVFAPAMAYPRGLPRLNALVSLWIERASNVETLTGCIYVAGAFEYDDV- 119 Query: 121 DSPMRDRIKKNILQWRGMLHRTIEQALEEGQLRPDTDPQQLVFELYCLMVGLMHDARFLR 180 +SP+R ++ N+ +WR + RT+ QALE G +RPDTDP+QLVFE+Y LM+GLMHDARFLR Sbjct: 120 ESPLRAVLEGNLRRWRDAMLRTVNQALEAGHVRPDTDPEQLVFEVYSLMIGLMHDARFLR 179 Query: 181 DPQALERVQTAYDRLISTYRSFNY 204 DP+A +RV+ AY+RLISTYRSF Y Sbjct: 180 DPKAPDRVRAAYERLISTYRSFKY 203