BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0084.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_549555.1| peptide methionine sulfoxide reductase [Polarom... 292 2e-77 ref|ZP_07025183.1| peptide methionine sulfoxide reductase [Afipi... 278 7e-73 ref|YP_003776445.1| peptide methionine sulfoxide reductase [Herb... 277 8e-73 ref|YP_485138.1| methionine sulfoxide reductase A [Rhodopseudomo... 276 1e-72 ref|ZP_08627224.1| peptide methionine sulfoxide reductase MsrA [... 276 2e-72 >ref|YP_549555.1| peptide methionine sulfoxide reductase [Polaromonas sp. JS666] gb|ABE44657.1| peptide methionine sulfoxide reductase [Polaromonas sp. JS666] Length = 242 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 143/211 (67%), Positives = 161/211 (76%), Gaps = 8/211 (3%) Query: 26 AAESAFRIPPPK-SAPAN-----NAATETVVLAGGCFWGVQAVFQHTLGVTSAVSGYAGG 79 A E A ++P P PA A + T V AGGCFWGVQAVFQHT GV +AVSGYAGG Sbjct: 30 AEEKAVKLPAPAMDMPATAQAGPQAGSATAVFAGGCFWGVQAVFQHTQGVLNAVSGYAGG 89 Query: 80 AKETARYEMVGSGSTGHAESVKVTFDPRKVSYGKILQIYFSVVHDPTQLNRQGPDSGTQY 139 K TA YEM+GSG TGHAESV++T+DP+K+SYGK+LQIYFSV HDPT LNRQGPDSGTQY Sbjct: 90 EKATASYEMIGSGRTGHAESVQITYDPKKISYGKLLQIYFSVAHDPTTLNRQGPDSGTQY 149 Query: 140 RSAIFYQSDEQKRVAADYIAQLDAAKIYPARIVTQLTPLAPTAFYAAEDYHQDFATLHPT 199 RSA+FYQ QK+V YIAQLDAAK++P +IVTQLTPL FY AE YHQD+ATLHP Sbjct: 150 RSAVFYQDANQKKVTESYIAQLDAAKVFPNKIVTQLTPL--NGFYPAEAYHQDYATLHPN 207 Query: 200 QGYIARFDLPKIENFKQMFPSDYRAAPVLVS 230 Q YIARFDLPKI N K + P YR PVLVS Sbjct: 208 QPYIARFDLPKIANLKTVMPEVYRDKPVLVS 238 >ref|ZP_07025183.1| peptide methionine sulfoxide reductase [Afipia sp. 1NLS2] gb|EFI52325.1| peptide methionine sulfoxide reductase [Afipia sp. 1NLS2] Length = 241 Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 131/208 (62%), Positives = 164/208 (78%), Gaps = 6/208 (2%) Query: 26 AAESAFRIPPPKSAPANNAAT----ETVVLAGGCFWGVQAVFQHTLGVTSAVSGYAGGAK 81 A+ F IPPPK+ A N AT ++VLAGGCFWGVQ V+QHT GV AVSGYAGG+ Sbjct: 29 ASAEPFIIPPPKTDVATNTATSSEPRSIVLAGGCFWGVQGVYQHTKGVLQAVSGYAGGSA 88 Query: 82 ETARYEMVGSGSTGHAESVKVTFDPRKVSYGKILQIYFSVVHDPTQLNRQGPDSGTQYRS 141 ++ARY+ V +GSTGHAESVK+T+DP++++ GKILQIYFSVVHDPTQLNRQGPDSGTQYRS Sbjct: 89 DSARYDTVSTGSTGHAESVKITYDPKQINLGKILQIYFSVVHDPTQLNRQGPDSGTQYRS 148 Query: 142 AIFYQSDEQKRVAADYIAQLDAAKIYPARIVTQLTPLAPTAFYAAEDYHQDFATLHPTQG 201 AIF E++++A DYIA+L+AAKIY IVT++ P+ FY AE+YHQD+ TLHP Q Sbjct: 149 AIFTSQPEEQKIAKDYIAELNAAKIYKRPIVTKIEPM--NGFYPAENYHQDYLTLHPYQP 206 Query: 202 YIARFDLPKIENFKQMFPSDYRAAPVLV 229 YIA D+PK++N K++F +DYR PVLV Sbjct: 207 YIAFNDIPKVDNLKKLFAADYRDKPVLV 234 >ref|YP_003776445.1| peptide methionine sulfoxide reductase [Herbaspirillum seropedicae SmR1] gb|ADJ64537.1| peptide methionine sulfoxide reductase protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 277 bits (709), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 137/199 (68%), Positives = 160/199 (80%), Gaps = 4/199 (2%) Query: 33 IPPP--KSAPANNAATETVVLAGGCFWGVQAVFQHTLGVTSAVSGYAGGAKETARYEMVG 90 +P P K+ A +A TET+VLAGGCFWGVQ VFQHT GV AVSGYAGG +TA Y MV Sbjct: 30 VPAPVGKALLAASAPTETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVS 89 Query: 91 SGSTGHAESVKVTFDPRKVSYGKILQIYFSVVHDPTQLNRQGPDSGTQYRSAIFYQSDEQ 150 SGSTGHAE+V+VT+DPRK+S+G++LQIYFSV HDPTQLNRQGPD GTQYRSAIF +++Q Sbjct: 90 SGSTGHAEAVQVTYDPRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQ 149 Query: 151 KRVAADYIAQLDAAKIYPARIVTQLTPLAPTAFYAAEDYHQDFATLHPTQGYIARFDLPK 210 K A YIAQL+AAK+Y A IVTQ+T L FYAAEDYHQD+ATLHP Q YIA DLPK Sbjct: 150 KEAAQAYIAQLNAAKVYGAPIVTQVTAL--QGFYAAEDYHQDYATLHPNQPYIAYNDLPK 207 Query: 211 IENFKQMFPSDYRAAPVLV 229 I N ++M+P+ YRA PVLV Sbjct: 208 IGNLQKMYPALYRADPVLV 226 >ref|YP_485138.1| methionine sulfoxide reductase A [Rhodopseudomonas palustris HaA2] gb|ABD06227.1| peptide methionine sulfoxide reductase [Rhodopseudomonas palustris HaA2] Length = 236 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/209 (62%), Positives = 162/209 (77%), Gaps = 2/209 (0%) Query: 23 PAFAAESAFRIPPPKSAPANNAATETVVLAGGCFWGVQAVFQHTLGVTSAVSGYAGGAKE 82 P+ AAE A IPPP ++ T+T V AGGCFWGVQ VFQHT GV +AVSGY+GG++ Sbjct: 25 PSLAAEDAVVIPPPALDVSSADGTQTAVFAGGCFWGVQGVFQHTAGVLNAVSGYSGGSQA 84 Query: 83 TARYEMVGSGSTGHAESVKVTFDPRKVSYGKILQIYFSVVHDPTQLNRQGPDSGTQYRSA 142 TA Y + +G+TGHAE+V++ ++P+++SYG++LQI+FSVVHDPTQLNRQGPD GTQYRSA Sbjct: 85 TANYTAISTGATGHAEAVEIKYNPKQISYGQLLQIFFSVVHDPTQLNRQGPDVGTQYRSA 144 Query: 143 IFYQSDEQKRVAADYIAQLDAAKIYPARIVTQLTPLAPTAFYAAEDYHQDFATLHPTQGY 202 IF +DEQK+VA YIAQLDAA++Y IVT++ PL FYAAE YHQD+ TLHPTQ Y Sbjct: 145 IFTVNDEQKKVADAYIAQLDAARVYKKPIVTKVGPL--DGFYAAEAYHQDYLTLHPTQPY 202 Query: 203 IARFDLPKIENFKQMFPSDYRAAPVLVSS 231 I DLPKIEN K++FP DY P LVSS Sbjct: 203 IVYNDLPKIENLKKLFPKDYLTKPTLVSS 231 >ref|ZP_08627224.1| peptide methionine sulfoxide reductase MsrA [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09850.1| peptide methionine sulfoxide reductase MsrA [Bradyrhizobiaceae bacterium SG-6C] Length = 242 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 138/216 (63%), Positives = 164/216 (75%), Gaps = 2/216 (0%) Query: 14 VLAASALTMPAFAAESAFRIPPPKSAPANNAATETVVLAGGCFWGVQAVFQHTLGVTSAV 73 +LA T+P+ AAE AF IPPP + A +T VLAGGCFWGVQ V+QHT GVT+AV Sbjct: 22 LLALGWFTVPSRAAEEAFIIPPPAADIAPAGGLKTFVLAGGCFWGVQGVYQHTKGVTNAV 81 Query: 74 SGYAGGAKETARYEMVGSGSTGHAESVKVTFDPRKVSYGKILQIYFSVVHDPTQLNRQGP 133 SGYAGG ETA+YE VG G+TGHAE+V++T+DP++VS GK+LQIYFSVVHDPTQLNRQGP Sbjct: 82 SGYAGGKAETAKYETVGRGTTGHAEAVQITYDPKQVSLGKLLQIYFSVVHDPTQLNRQGP 141 Query: 134 DSGTQYRSAIFYQSDEQKRVAADYIAQLDAAKIYPARIVTQLTPLAPTAFYAAEDYHQDF 193 DSGTQYRS IF +K++A DYIAQL+AAK+Y I T + PL FYAAEDYHQD+ Sbjct: 142 DSGTQYRSTIFTSDPAEKKLAQDYIAQLNAAKVYKKTIATTIEPL--QGFYAAEDYHQDY 199 Query: 194 ATLHPTQGYIARFDLPKIENFKQMFPSDYRAAPVLV 229 TLHP Q YI DLPKIEN K++F +YR P LV Sbjct: 200 LTLHPNQPYIVFNDLPKIENLKKIFAENYRDKPALV 235