BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0080.p         (96 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component...   188   2e-46
ref|YP_004750844.1| DNA-binding heavy metal response regulator [...   169   2e-40
ref|NP_891076.1| response regulatory protein [Bordetella bronchi...   159   2e-37
ref|YP_003607270.1| transcriptional regulator [Burkholderia sp. ...   158   3e-37
ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia x...   158   3e-37

>ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64540.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  188 bits (477), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/96 (91%), Positives = 94/96 (97%)

Query: 1   VADLQLDHVRHKVTRQGVNIVLTNKEFLLLHLLIKRQGEALSRSVIASQVWDMNFDSDTN 60
           +ADLQLDHVRHKVTRQGVNI LTNKEF+LLHLLIKRQGEALSRSVIASQ+WDMNFDSDTN
Sbjct: 128 IADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDMNFDSDTN 187

Query: 61  VVDVAVKRLRAKIDAPFEKKLIHTVRSIGYMFSETP 96
           VVDVA+KRLRAKIDAPF+KKLIHTVRS+GYMFSE P
Sbjct: 188 VVDVAIKRLRAKIDAPFDKKLIHTVRSVGYMFSEEP 223


>ref|YP_004750844.1| DNA-binding heavy metal response regulator [Collimonas fungivorans
           Ter331]
 gb|AEK60021.1| DNA-binding heavy metal response regulator [Collimonas fungivorans
           Ter331]
          Length = 226

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/96 (84%), Positives = 89/96 (92%)

Query: 1   VADLQLDHVRHKVTRQGVNIVLTNKEFLLLHLLIKRQGEALSRSVIASQVWDMNFDSDTN 60
           VADLQLD +R KVTRQG +IVLTNKEFLLLHLL+KR+GE LSR+VIAS+VWDMNFDSDTN
Sbjct: 131 VADLQLDLLRRKVTRQGTDIVLTNKEFLLLHLLVKRKGEPLSRTVIASEVWDMNFDSDTN 190

Query: 61  VVDVAVKRLRAKIDAPFEKKLIHTVRSIGYMFSETP 96
           VVDVA+KRLRAKID PFE KLIHTVRSIGYMF+E P
Sbjct: 191 VVDVAIKRLRAKIDNPFEHKLIHTVRSIGYMFAEDP 226


>ref|NP_891076.1| response regulatory protein [Bordetella bronchiseptica RB50]
 emb|CAE34905.1| response regulatory protein [Bordetella bronchiseptica RB50]
          Length = 223

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 85/96 (88%)

Query: 1   VADLQLDHVRHKVTRQGVNIVLTNKEFLLLHLLIKRQGEALSRSVIASQVWDMNFDSDTN 60
           VADL+LD VR KVTR G +IVLTNKEF+LLHLLI+RQGEALSR++IAS+VWDMNFDSDTN
Sbjct: 128 VADLRLDPVRRKVTRGGASIVLTNKEFMLLHLLIRRQGEALSRTIIASEVWDMNFDSDTN 187

Query: 61  VVDVAVKRLRAKIDAPFEKKLIHTVRSIGYMFSETP 96
           VVDVA+KRLRAK+DAPF  KLI TVR IGY  +E P
Sbjct: 188 VVDVAIKRLRAKVDAPFPLKLIQTVRGIGYALAEQP 223


>ref|YP_003607270.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gb|ADG17759.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 223

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 88/95 (92%)

Query: 1   VADLQLDHVRHKVTRQGVNIVLTNKEFLLLHLLIKRQGEALSRSVIASQVWDMNFDSDTN 60
           VADL+LD +R +VTR+GV+I LTNKEF+LLHLL++R+GEALSRS IAS+VWDMNFDSDTN
Sbjct: 128 VADLKLDVLRRRVTREGVDIPLTNKEFMLLHLLVRREGEALSRSQIASEVWDMNFDSDTN 187

Query: 61  VVDVAVKRLRAKIDAPFEKKLIHTVRSIGYMFSET 95
           VVDVA+KRLRAK+D PFEKKLIHTVRSIGY F ++
Sbjct: 188 VVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTFGDS 222


>ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 ref|ZP_06842747.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
 gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gb|EFG69706.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
          Length = 223

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 86/94 (91%)

Query: 1   VADLQLDHVRHKVTRQGVNIVLTNKEFLLLHLLIKRQGEALSRSVIASQVWDMNFDSDTN 60
           +ADL+LD +R KVTR+GV I LTNKEF+LLHLL++RQGEALSR+ IAS+VWDMNFDSDTN
Sbjct: 128 IADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDMNFDSDTN 187

Query: 61  VVDVAVKRLRAKIDAPFEKKLIHTVRSIGYMFSE 94
           VVDVA+KRLRAK+D PFEKKLIHTVRSIGY F +
Sbjct: 188 VVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTFGD 221