BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0077.p (195 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753410.1| hypothetical protein CFU_2760 [Collimonas fu... 307 5e-82 ref|YP_003776451.1| transcription regulator protein [Herbaspiril... 290 6e-77 ref|YP_587359.1| transcriptional regulator [Cupriavidus metallid... 268 3e-70 ref|YP_787607.1| hypothetical protein BAV3112 [Bordetella avium ... 265 3e-69 emb|CCA86852.1| putative transcriptional regulator arsR family,w... 264 4e-69 >ref|YP_004753410.1| hypothetical protein CFU_2760 [Collimonas fungivorans Ter331] gb|AEK62587.1| hypothetical protein CFU_2760 [Collimonas fungivorans Ter331] Length = 215 Score = 307 bits (786), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 160/193 (82%), Positives = 171/193 (88%), Gaps = 2/193 (1%) Query: 2 QRFILHFGEMGSRWGINRTVGQIYALLYVQARPLNADEIADYLSFSRSNVSMGLKELQSW 61 QRFI HFGEMGSRWGINRTVGQIYALLYV +PLNAD+IADYL+FSRSNVSMGLKELQSW Sbjct: 22 QRFISHFGEMGSRWGINRTVGQIYALLYVLGQPLNADQIADYLTFSRSNVSMGLKELQSW 81 Query: 62 RLVKLLHQPGDRREYFEPPKDIWDIFKALLEERRRREIEPTLSMLRDALLETPASADDKH 121 RLVKLLHQPGDRREYFEPPKDIWDIFK LLEERRRREIEPTLSMLRDALLE PA+ DK Sbjct: 82 RLVKLLHQPGDRREYFEPPKDIWDIFKTLLEERRRREIEPTLSMLRDALLENPANDTDKQ 141 Query: 122 AQKRMREMYDLIELSSSWFDDVQRLSPETLSSLMKMGSKIKKLLDVKDKFRF--GGEKTD 179 AQ+RMREMY+LIELSSSWFDDVQRLSPETL+SLMKMGSK+KKLLDV+DKFR GG K+ Sbjct: 142 AQQRMREMYNLIELSSSWFDDVQRLSPETLASLMKMGSKVKKLLDVRDKFRVGSGGSKSH 201 Query: 180 NKSEDKSAKVAAK 192 + D V K Sbjct: 202 HDHPDVQLTVQLK 214 >ref|YP_003776451.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64543.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 189 Score = 290 bits (743), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 149/174 (85%), Positives = 159/174 (91%) Query: 1 MQRFILHFGEMGSRWGINRTVGQIYALLYVQARPLNADEIADYLSFSRSNVSMGLKELQS 60 MQRFI HFGEMGSRWGINRTVGQIYALLY+ R LNADEIADYLSFSRSNVSMGLKELQS Sbjct: 10 MQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQS 69 Query: 61 WRLVKLLHQPGDRREYFEPPKDIWDIFKALLEERRRREIEPTLSMLRDALLETPASADDK 120 WRLVKLLH+P DRREYFEPP DIWDIFK LLEERRRREIEPTLSMLRDALLE + DDK Sbjct: 70 WRLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDK 129 Query: 121 HAQKRMREMYDLIELSSSWFDDVQRLSPETLSSLMKMGSKIKKLLDVKDKFRFG 174 Q+RMREMY+LIELSSSWFD+VQRLSPETL SLMKMG+K+KKLLDV++KFR G Sbjct: 130 QVQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKFRLG 183 >ref|YP_587359.1| transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF12090.1| conserved hypothetical protein; putative transcriptional regulator (ArsR family) [Cupriavidus metallidurans CH34] Length = 214 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 130/198 (65%), Positives = 155/198 (78%), Gaps = 5/198 (2%) Query: 1 MQRFILHFGEMGSRWGINRTVGQIYALLYVQARPLNADEIADYLSFSRSNVSMGLKELQS 60 +QRF+LHFGEMGSRWGINRTVGQIYALL+ +RPLNADEIA+ L FSRSNVS+GLKEL+S Sbjct: 7 IQRFVLHFGEMGSRWGINRTVGQIYALLFTASRPLNADEIAESLGFSRSNVSIGLKELES 66 Query: 61 WRLVKLLHQPGDRREYFEPPKDIWDIFKALLEERRRREIEPTLSMLRDALLETPASADDK 120 W LV+L HQPGDRREYF P D+W IF+ L EERRRREI+PTLSMLR+ LETP S +D Sbjct: 67 WSLVRLSHQPGDRREYFSAPDDVWAIFRTLAEERRRREIDPTLSMLREVQLETPTSPEDL 126 Query: 121 HAQKRMREMYDLIELSSSWFDDVQRLSPETLSSLMKMGSKIKKLLDVKDKFR----FGGE 176 HAQ RM+EMY LI L ++WF D+Q+L TL LM++GS++ KLLDVKD+ G E Sbjct: 127 HAQARMKEMYGLIFLVTTWFGDMQKLDVATLEKLMRLGSRVTKLLDVKDRLTSAIGIGRE 186 Query: 177 KTDNKSEDKSA-KVAAKA 193 K NK+ K A + AAKA Sbjct: 187 KASNKASSKPAPREAAKA 204 >ref|YP_787607.1| hypothetical protein BAV3112 [Bordetella avium 197N] emb|CAJ50722.1| conserved hypothetical protein [Bordetella avium 197N] Length = 190 Score = 265 bits (676), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 118/172 (68%), Positives = 152/172 (88%) Query: 1 MQRFILHFGEMGSRWGINRTVGQIYALLYVQARPLNADEIADYLSFSRSNVSMGLKELQS 60 ++RF+LHFGEMGSRWG+NRTVGQIYALL++ RPL+AD+IA+ L FSRSNVSMGLKELQS Sbjct: 7 IERFVLHFGEMGSRWGVNRTVGQIYALLFLSPRPLHADDIAEALGFSRSNVSMGLKELQS 66 Query: 61 WRLVKLLHQPGDRREYFEPPKDIWDIFKALLEERRRREIEPTLSMLRDALLETPASADDK 120 WRLVKL+HQ GDRREYFE PKD+W+IF+ L+EE+R+REI+PTL++LR+ALLE + A++ Sbjct: 67 WRLVKLMHQVGDRREYFETPKDVWEIFRILMEEKRKREIDPTLTLLREALLEPSSEANEV 126 Query: 121 HAQKRMREMYDLIELSSSWFDDVQRLSPETLSSLMKMGSKIKKLLDVKDKFR 172 HAQ+RMREM +LIELS+ WFD+VQRL PETL +LM++GS+++K+L K R Sbjct: 127 HAQQRMREMLELIELSTGWFDEVQRLPPETLQNLMRLGSRVQKVLSFAGKLR 178 >emb|CCA86852.1| putative transcriptional regulator arsR family,winged helix repressor DNA-binding domain [Ralstonia syzygii R24] Length = 192 Score = 264 bits (675), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 121/179 (67%), Positives = 148/179 (82%), Gaps = 2/179 (1%) Query: 2 QRFILHFGEMGSRWGINRTVGQIYALLYVQARPLNADEIADYLSFSRSNVSMGLKELQSW 61 QRF+LHFGEMGSRWGINRTVGQIYALLY P+NADEIA+ L FSRSNVS+GLKEL+SW Sbjct: 14 QRFVLHFGEMGSRWGINRTVGQIYALLYASREPINADEIAEALGFSRSNVSIGLKELESW 73 Query: 62 RLVKLLHQPGDRREYFEPPKDIWDIFKALLEERRRREIEPTLSMLRDALLETPASADDKH 121 +LV+L H+PGDRREYF P DIW IF+ L EERR+REI+PTLS+LRD +LE+PA DD+H Sbjct: 74 KLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPADPDDRH 133 Query: 122 AQKRMREMYDLIELSSSWFDDVQRLSPETLSSLMKMGSKIKKLLDVKDKFR--FGGEKT 178 AQ RM+EMY LI L ++WFDDVQ+L + L LMKMG+K++KLL++K+K GG+ T Sbjct: 134 AQARMKEMYQLITLVTTWFDDVQKLDVDALQQLMKMGAKVQKLLEMKNKLAVVVGGKST 192