BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0075.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776453.1| cytochrome bd-type quinol oxidase subunit 1 ... 644 0.0 ref|YP_004753412.1| cytochrome d ubiquinol oxidase subunit I [Co... 634 e-179 ref|YP_556904.1| putative cytochrome bd ubiquinol oxidase,subuni... 572 e-161 ref|YP_001894217.1| cytochrome bd ubiquinol oxidase subunit I [B... 570 e-160 ref|YP_001856538.1| cytochrome bd ubiquinol oxidase subunit I [B... 570 e-160 >ref|YP_003776453.1| cytochrome bd-type quinol oxidase subunit 1 [Herbaspirillum seropedicae SmR1] gb|ADJ64545.1| cytochrome bd-type quinol oxidase, subunit 1, protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/342 (91%), Positives = 332/342 (97%) Query: 1 MLPIDEVVSLSRLQFAITALYHFLFVPLTLGLSWILVIMESVYVMTGSPIYKDMTRFWGK 60 M+PIDEVVSLSRLQFA+TALYHFLFVPLTLGLSWILVIMESVYVMTG+ IYKDMTRFWGK Sbjct: 1 MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60 Query: 61 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGMAAFFLESTFVGLFFFG 120 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEG+ AFFLESTFVGLFFFG Sbjct: 61 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120 Query: 121 WDRLSRVKHLMVTFLVALGSSLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180 WD+LSR +HL+VT LVALGS+LSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN Sbjct: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180 Query: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAYYLLKGRDTAFALRSFAVAAGFGLASTLSVIVL 240 PVAQVKFVHTVAAGYVTASMFVLGVSA+YLLK RDTAFALRSFAVAAGFGLA+TLSVIVL Sbjct: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240 Query: 241 GDESGYTAGEVNKVKLAAIEAEWETHPAPAGITVFGLPDNKGERTDYAFKVPYVLGLIAT 300 GDESGYTAGEVNKVKLAAIEAEW+THPAPAG+T+FGLP++K ERTDYA K+PYVLGLIAT Sbjct: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300 Query: 301 RSVDTPVIGIKDLKKEHEVRIRNGMLAYAALTRLKSGDKSPE 342 RS DT V+GIKDLKKEHE RIRNGMLAYAALT+LKSGDKSPE Sbjct: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPE 342 >ref|YP_004753412.1| cytochrome d ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] gb|AEK62589.1| Cytochrome d ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] Length = 528 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 307/351 (87%), Positives = 330/351 (94%), Gaps = 2/351 (0%) Query: 1 MLPIDEVVSLSRLQFAITALYHFLFVPLTLGLSWILVIMESVYVMTGSPIYKDMTRFWGK 60 M+PIDEVV+LSRLQFA TA++HFLFVPLTLGL+WILVIMESVYVMTGSPIYKDMTRFWGK Sbjct: 1 MIPIDEVVALSRLQFAATAMFHFLFVPLTLGLAWILVIMESVYVMTGSPIYKDMTRFWGK 60 Query: 61 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGMAAFFLESTFVGLFFFG 120 LFGINFAMG+ATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGM AFFLESTFVGLFFFG Sbjct: 61 LFGINFAMGIATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGMMAFFLESTFVGLFFFG 120 Query: 121 WDRLSRVKHLMVTFLVALGSSLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180 WDRLSRV+HL++TFLVALGSSLSALWILIANGWMNNPVGAEFN+ETMRMEL S+ DVIFN Sbjct: 121 WDRLSRVQHLLITFLVALGSSLSALWILIANGWMNNPVGAEFNYETMRMELTSIVDVIFN 180 Query: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAYYLLKGRDTAFALRSFAVAAGFGLASTLSVIVL 240 PVAQVKFVHT++AGYV ASMFVLG+SAYYLLKGRDTAFALRSFA+AAGFGLASTLSVIVL Sbjct: 181 PVAQVKFVHTLSAGYVAASMFVLGISAYYLLKGRDTAFALRSFAIAAGFGLASTLSVIVL 240 Query: 241 GDESGYTAGEVNKVKLAAIEAEWETHPAPAGITVFGLPDNKGERTDYAFKVPYVLGLIAT 300 GDESGYTAGEVNKVK+AA+EAEW T PAPAGITVFG P+ K +RTD+AFK+PYVLGLI T Sbjct: 241 GDESGYTAGEVNKVKMAAMEAEWHTEPAPAGITVFGWPNEKEQRTDFAFKIPYVLGLIGT 300 Query: 301 RSVDTPVIGIKDLKKEHEVRIRNGMLAYAALTRLKSGDKSPE--XALTRLK 349 RSVD + GI DLKKEHEVRIRNGMLAYAALTRLK GDKSPE A +LK Sbjct: 301 RSVDKQITGIHDLKKEHEVRIRNGMLAYAALTRLKGGDKSPEAVAAFDKLK 351 >ref|YP_556904.1| putative cytochrome bd ubiquinol oxidase,subunit I [Burkholderia xenovorans LB400] ref|YP_559109.1| cytochrome bd ubiquinol oxidase, subunit I [Burkholderia xenovorans LB400] gb|ABE28852.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Burkholderia xenovorans LB400] gb|ABE31057.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Burkholderia xenovorans LB400] Length = 535 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 274/341 (80%), Positives = 306/341 (89%) Query: 2 LPIDEVVSLSRLQFAITALYHFLFVPLTLGLSWILVIMESVYVMTGSPIYKDMTRFWGKL 61 +P+ EVV LSRLQFAITALYHFLFVPLTLGLSW+LVIMESVYVMTG IYKDMT+FWGKL Sbjct: 1 MPVSEVVELSRLQFAITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQIYKDMTQFWGKL 60 Query: 62 FGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGMAAFFLESTFVGLFFFGW 121 FGINFAMGV TG+TLEFQFGTNWSYYSHYVGDIFG PLA+EG+ AFFLESTFVGLFFFGW Sbjct: 61 FGINFAMGVTTGLTLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW 120 Query: 122 DRLSRVKHLMVTFLVALGSSLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNP 181 RLSRV+H++VTFLVALGS+LSALWIL+ANGWMNNPVGA FN++TMRMEL S+ V+FNP Sbjct: 121 KRLSRVQHVIVTFLVALGSNLSALWILVANGWMNNPVGATFNYQTMRMELDSIFSVLFNP 180 Query: 182 VAQVKFVHTVAAGYVTASMFVLGVSAYYLLKGRDTAFALRSFAVAAGFGLASTLSVIVLG 241 VAQVKFVHTV+AGYVTASMFVLGVS++YLLK RDT FALRSFA+AAGFGLASTL VIVLG Sbjct: 181 VAQVKFVHTVSAGYVTASMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASTLCVIVLG 240 Query: 242 DESGYTAGEVNKVKLAAIEAEWETHPAPAGITVFGLPDNKGERTDYAFKVPYVLGLIATR 301 DESGY GEV +VKLAAIE+EWET PAPA T+ G+P+ K ERTDYA +VPY LGLIATR Sbjct: 241 DESGYRTGEVQQVKLAAIESEWETAPAPAPFTIIGIPNQKEERTDYAIRVPYALGLIATR 300 Query: 302 SVDTPVIGIKDLKKEHEVRIRNGMLAYAALTRLKSGDKSPE 342 S+D PV+G+KDL +E RIRNGMLAYAAL +LK GD + E Sbjct: 301 SLDEPVVGLKDLMVRNEARIRNGMLAYAALQKLKQGDVTDE 341 >ref|YP_001894217.1| cytochrome bd ubiquinol oxidase subunit I [Burkholderia phytofirmans PsJN] gb|ACD14993.1| cytochrome bd ubiquinol oxidase subunit I [Burkholderia phytofirmans PsJN] Length = 530 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 272/341 (79%), Positives = 306/341 (89%) Query: 2 LPIDEVVSLSRLQFAITALYHFLFVPLTLGLSWILVIMESVYVMTGSPIYKDMTRFWGKL 61 +P+ EVV LSRLQFAITALYHFLFVPLTLGLSW+LVIMESVYVMTG IYKDMT+FWGKL Sbjct: 1 MPVSEVVELSRLQFAITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQIYKDMTQFWGKL 60 Query: 62 FGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGMAAFFLESTFVGLFFFGW 121 FGINFAMGV TG+TLEFQFGTNWSYYSHYVGDIFG PLA+EG+ AFFLESTFVGLFFFGW Sbjct: 61 FGINFAMGVTTGLTLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW 120 Query: 122 DRLSRVKHLMVTFLVALGSSLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNP 181 RLS+V+H+ VTFLVALGS+LSALWIL+ANGWMNNPVGA FN++TMRMEL S+ V+FNP Sbjct: 121 KRLSKVQHVFVTFLVALGSNLSALWILVANGWMNNPVGATFNYQTMRMELDSIFSVLFNP 180 Query: 182 VAQVKFVHTVAAGYVTASMFVLGVSAYYLLKGRDTAFALRSFAVAAGFGLASTLSVIVLG 241 VAQVKFVHTV+AGYVTASMFVLGVS++YLLK RDT FALRSFA+AAGFGLASTL VIVLG Sbjct: 181 VAQVKFVHTVSAGYVTASMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASTLCVIVLG 240 Query: 242 DESGYTAGEVNKVKLAAIEAEWETHPAPAGITVFGLPDNKGERTDYAFKVPYVLGLIATR 301 DESGY GEV +VKLAAIE+EWET PAPA T+ G+P+ K ERTDYA ++PY LGLIATR Sbjct: 241 DESGYRTGEVQQVKLAAIESEWETAPAPAPFTIIGIPNQKEERTDYAIRIPYALGLIATR 300 Query: 302 SVDTPVIGIKDLKKEHEVRIRNGMLAYAALTRLKSGDKSPE 342 S+D PV+G+KDL +EVRI+NGMLAYAAL +LK GD + E Sbjct: 301 SLDEPVVGLKDLMAHNEVRIKNGMLAYAALQKLKQGDITDE 341 >ref|YP_001856538.1| cytochrome bd ubiquinol oxidase subunit I [Burkholderia phymatum STM815] gb|ACC69492.1| cytochrome bd ubiquinol oxidase subunit I [Burkholderia phymatum STM815] Length = 529 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 270/341 (79%), Positives = 308/341 (90%) Query: 2 LPIDEVVSLSRLQFAITALYHFLFVPLTLGLSWILVIMESVYVMTGSPIYKDMTRFWGKL 61 +P +VV LSRLQFA+TALYHFLFVPLTLGLSW+LVIMESVYVMTG IYKDMT+FWGKL Sbjct: 1 MPASDVVDLSRLQFAVTALYHFLFVPLTLGLSWLLVIMESVYVMTGKQIYKDMTQFWGKL 60 Query: 62 FGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGMAAFFLESTFVGLFFFGW 121 FGINFAMGV TG+TLEFQFGTNWSYYSHYVGDIFG PLA+EG+ AFFLESTFVGLFFFGW Sbjct: 61 FGINFAMGVTTGLTLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW 120 Query: 122 DRLSRVKHLMVTFLVALGSSLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNP 181 +RLSRV+HLMVTFLVALGS+LSALWILIANGWMNNPVGAEFN+ETMRMEL S+ DVIFNP Sbjct: 121 NRLSRVQHLMVTFLVALGSNLSALWILIANGWMNNPVGAEFNYETMRMELSSIFDVIFNP 180 Query: 182 VAQVKFVHTVAAGYVTASMFVLGVSAYYLLKGRDTAFALRSFAVAAGFGLASTLSVIVLG 241 VAQVKFVHTV+AGYVTASMFVLG+S++YLLK RD FALRSFAVAAGFGLA+TL VIVLG Sbjct: 181 VAQVKFVHTVSAGYVTASMFVLGLSSWYLLKRRDIDFALRSFAVAAGFGLAATLCVIVLG 240 Query: 242 DESGYTAGEVNKVKLAAIEAEWETHPAPAGITVFGLPDNKGERTDYAFKVPYVLGLIATR 301 DESGYT GEV ++KLAAIE+EWET P PA T+FG+P+ + ERTDYA +VPY LG+IATR Sbjct: 241 DESGYTTGEVQQMKLAAIESEWETAPPPAPFTIFGMPNQQEERTDYALRVPYALGIIATR 300 Query: 302 SVDTPVIGIKDLKKEHEVRIRNGMLAYAALTRLKSGDKSPE 342 S+D PV+G+K+L ++E RIRNG+LAY AL +++ GD + E Sbjct: 301 SLDEPVVGLKELMAQNETRIRNGILAYGALQKIRQGDATDE 341