BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0074.p (160 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776453.1| cytochrome bd-type quinol oxidase subunit 1 ... 241 2e-62 ref|YP_004753412.1| cytochrome d ubiquinol oxidase subunit I [Co... 227 6e-58 ref|ZP_08483996.1| cytochrome bd ubiquinol oxidase subunit I [Me... 187 5e-46 ref|ZP_02354381.1| cytochrome d ubiquinol oxidase, subunit I [Bu... 182 1e-44 ref|YP_001766109.1| cytochrome bd ubiquinol oxidase subunit I [B... 181 4e-44 >ref|YP_003776453.1| cytochrome bd-type quinol oxidase subunit 1 [Herbaspirillum seropedicae SmR1] gb|ADJ64545.1| cytochrome bd-type quinol oxidase, subunit 1, protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/149 (79%), Positives = 129/149 (86%) Query: 1 VAPLFWSFRGMVALGMLFLFIFSASFYFLVRKQLAPQRWLLRLAVFSIPLPWIAAELGWI 60 VAPLFWSFRGMVALG LFLFIFSASF+FL +KQLAPQRWLLRLAV SIPLPWIAAELGWI Sbjct: 386 VAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAPQRWLLRLAVISIPLPWIAAELGWI 445 Query: 61 VAEYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRGPS 120 VAEYGRQPWTIAGILPT LSAS+LQ SLYFSLAGF+LFYTFLLVVEM+LM+KYA+ GPS Sbjct: 446 VAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFILFYTFLLVVEMILMVKYARLGPS 505 Query: 121 SLHTGKYHWELLEKTKKPAVAAKPPVPPQ 149 SLHTG+Y+WE K P PP+ P Sbjct: 506 SLHTGQYYWENKGKESGPGDVLPPPLNPS 534 >ref|YP_004753412.1| cytochrome d ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] gb|AEK62589.1| Cytochrome d ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] Length = 528 Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 105/141 (74%), Positives = 124/141 (87%) Query: 1 VAPLFWSFRGMVALGMLFLFIFSASFYFLVRKQLAPQRWLLRLAVFSIPLPWIAAELGWI 60 +AP+FWSFR MV LG+LFLFIFS SFYFL+RK+LA QRWLLRLAV+SIPLPW+A ELGW+ Sbjct: 386 IAPMFWSFRLMVGLGILFLFIFSCSFYFLIRKKLAKQRWLLRLAVYSIPLPWVAIELGWL 445 Query: 61 VAEYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRGPS 120 +AEYGRQPWTI+G+LPT LSASTLQ SLYFSLAGF+ FY FL ++EM+LM+KYA+RGPS Sbjct: 446 LAEYGRQPWTISGVLPTHLSASTLQPGSLYFSLAGFLGFYGFLFIIEMILMVKYARRGPS 505 Query: 121 SLHTGKYHWELLEKTKKPAVA 141 SLHTGKYHWE LE + + A Sbjct: 506 SLHTGKYHWERLETSTTGSTA 526 >ref|ZP_08483996.1| cytochrome bd ubiquinol oxidase subunit I [Methylomicrobium album BG8] gb|EGL05166.1| cytochrome bd ubiquinol oxidase subunit I [Methylomicrobium album BG8] Length = 520 Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 88/130 (67%), Positives = 105/130 (80%) Query: 1 VAPLFWSFRGMVALGMLFLFIFSASFYFLVRKQLAPQRWLLRLAVFSIPLPWIAAELGWI 60 VAP+FWSFR MV G+ LFIF+A+FYF + QRWLLRLA + IPLPWIA+ELGW+ Sbjct: 385 VAPIFWSFRIMVFCGVAMLFIFAAAFYFNAKHTAHAQRWLLRLAFYGIPLPWIASELGWV 444 Query: 61 VAEYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRGPS 120 VAEYGRQPWTIA ILPT LS+S+L A LY SLAGF FYT LLV+E+ LM+KY ++GPS Sbjct: 445 VAEYGRQPWTIAEILPTHLSSSSLSAEQLYLSLAGFGFFYTVLLVIELFLMVKYIRQGPS 504 Query: 121 SLHTGKYHWE 130 SLHTG+YH+E Sbjct: 505 SLHTGRYHFE 514 >ref|ZP_02354381.1| cytochrome d ubiquinol oxidase, subunit I [Burkholderia oklahomensis EO147] Length = 531 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 91/144 (63%), Positives = 111/144 (77%), Gaps = 2/144 (1%) Query: 1 VAPLFWSFRGMVALGMLFLFIFSASFYFLVRKQL--APQRWLLRLAVFSIPLPWIAAELG 58 VAP+F+SFR MV LG LFL F A+F+F R+QL +RW LR AV++IPLPW+AAE G Sbjct: 385 VAPVFFSFRIMVFLGFLFLATFIAAFWFCARRQLLQDNRRWFLRYAVWAIPLPWLAAEFG 444 Query: 59 WIVAEYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRG 118 W+VAE GRQPWTIAGILPT LSAS+L ++ LY SLAGF+LFYT L ++E+ LM KYA+ G Sbjct: 445 WVVAEVGRQPWTIAGILPTHLSASSLTSTDLYLSLAGFILFYTALFIIEITLMFKYARLG 504 Query: 119 PSSLHTGKYHWELLEKTKKPAVAA 142 PSSLHTG+YH E E+ AVA Sbjct: 505 PSSLHTGRYHHEQAERQLDKAVAG 528 >ref|YP_001766109.1| cytochrome bd ubiquinol oxidase subunit I [Burkholderia cenocepacia MC0-3] ref|ZP_04940483.1| Cytochrome bd-type quinol oxidase, subunit 1 [Burkholderia cenocepacia PC184] gb|EAY63654.1| Cytochrome bd-type quinol oxidase, subunit 1 [Burkholderia cenocepacia PC184] gb|ACA91987.1| cytochrome bd ubiquinol oxidase subunit I [Burkholderia cenocepacia MC0-3] Length = 526 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 92/142 (64%), Positives = 110/142 (77%), Gaps = 2/142 (1%) Query: 1 VAPLFWSFRGMVALGMLFLFIFSASFYFLVRKQL--APQRWLLRLAVFSIPLPWIAAELG 58 VAP+F+SFR MV LG LF+ F A+F+F R+QL +RW LR AV++IPLPWIA E G Sbjct: 385 VAPVFFSFRIMVFLGFLFVATFVAAFWFCARRQLLQDNRRWFLRYAVWAIPLPWIAIEFG 444 Query: 59 WIVAEYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRG 118 WIVAE GRQPWTIAG+LPT LSAS+LQ S LY SLAGF+LFYT L V+E+ LM KYA+ G Sbjct: 445 WIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLAGFILFYTALFVIEIKLMFKYARLG 504 Query: 119 PSSLHTGKYHWELLEKTKKPAV 140 PSSLHTG+YH EL ++ AV Sbjct: 505 PSSLHTGRYHHELAAAGERAAV 526