BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0062.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776461.1| nucleoside-diphosphate-sugar epimerase [Herb... 535 e-150 ref|YP_004417117.1| hypothetical protein PT7_1953 [Pusillimonas ... 417 e-115 ref|YP_004754144.1| nucleoside-diphosphate-sugar epimerase [Coll... 389 e-106 ref|YP_623075.1| NAD-dependent epimerase/dehydratase [Burkholder... 368 e-100 ref|YP_838786.1| NAD-dependent epimerase/dehydratase [Burkholder... 367 1e-99 >ref|YP_003776461.1| nucleoside-diphosphate-sugar epimerase [Herbaspirillum seropedicae SmR1] gb|ADJ64553.1| nucleoside-diphosphate-sugar epimerase protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 258/299 (86%), Positives = 279/299 (93%) Query: 5 LTGSDGKQQTISRITLLDVVAAQGFDDARIEAVVGDIADAAVIERAITRDTQSIFHLAAI 64 LTG DG+ Q I RITLLDV AQGFDD RIEAV GDIADAAVIER IT +TQSIFHLAAI Sbjct: 26 LTGRDGQPQAIKRITLLDVAPAQGFDDPRIEAVTGDIADAAVIERVITAETQSIFHLAAI 85 Query: 65 VSGQAEADFELGMKINFDATRIILERARALGTKPRVVFTSSVAVFGGDLPAQVPDNALLM 124 VSG AEADF+LGMKINFDATR+ILERARALG+KPRVVFTSSVAVFGG+LPA VPDN LLM Sbjct: 86 VSGHAEADFDLGMKINFDATRVILERARALGSKPRVVFTSSVAVFGGELPAVVPDNTLLM 145 Query: 125 PQSSYGAQKVMGELLINDYSRKDYIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNG 184 PQSSYGAQKVMGELL+ DYSRK +IDGRALRMPTISVRPGAPNKAASSFASGIIREPLNG Sbjct: 146 PQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNG 205 Query: 185 QPSVCPVAPDTRMWLMSPRKAIDNLIHGHEINGADLGLARFLSIDGLSVSVRQMVDALEQ 244 QPSVCPV PDTRMWLMSPR+AI NLIHGHEINGADLGLARFLSIDGL V+V++MV+ALEQ Sbjct: 206 QPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGADLGLARFLSIDGLCVTVKEMVEALEQ 265 Query: 245 VAGADVVKLIEWKEDEAIKRIVNSWPGSFEAKRAKALGFTADSDFASIVKAHIEDEMKK 303 VAG +VV+LIEWKEDEAIKRIVNSWPG+FEAKRAKALGFTAD++FA I++AHIEDE+KK Sbjct: 266 VAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAKALGFTADANFADIIRAHIEDEVKK 324 >ref|YP_004417117.1| hypothetical protein PT7_1953 [Pusillimonas sp. T7-7] gb|AEC20493.1| hypothetical protein PT7_1953 [Pusillimonas sp. T7-7] Length = 324 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/297 (67%), Positives = 239/297 (80%) Query: 4 QLTGSDGKQQTISRITLLDVVAAQGFDDARIEAVVGDIADAAVIERAITRDTQSIFHLAA 63 +L G GK + ISRITL+DV A G D RI A+ G+I+D I IT DT SIFHLAA Sbjct: 25 KLVGRSGKPEAISRITLVDVNAPSGLSDPRINAMAGNISDPQTIAAIITPDTDSIFHLAA 84 Query: 64 IVSGQAEADFELGMKINFDATRIILERARALGTKPRVVFTSSVAVFGGDLPAQVPDNALL 123 IVSGQAE DF+LGM INFDATR +LER R LGT+PR+VFTSSVAVFGG LP VPD Sbjct: 85 IVSGQAETDFDLGMSINFDATRAMLERIRTLGTRPRMVFTSSVAVFGGPLPDSVPDTMAT 144 Query: 124 MPQSSYGAQKVMGELLINDYSRKDYIDGRALRMPTISVRPGAPNKAASSFASGIIREPLN 183 +PQSSYG QK M ELL++DYSR+ ++DGR LR+PTISVRPGAPNKAASSFASGIIREPLN Sbjct: 145 LPQSSYGTQKAMCELLVSDYSRRGFVDGRTLRLPTISVRPGAPNKAASSFASGIIREPLN 204 Query: 184 GQPSVCPVAPDTRMWLMSPRKAIDNLIHGHEINGADLGLARFLSIDGLSVSVRQMVDALE 243 GQ ++CPV DTRMWLMSP++A+ NLIHGHE++ + LG R +S+ GLSV+VR MV ALE Sbjct: 205 GQAAICPVQGDTRMWLMSPQQAVHNLIHGHELDASKLGHTRTISLPGLSVTVRAMVAALE 264 Query: 244 QVAGADVVKLIEWKEDEAIKRIVNSWPGSFEAKRAKALGFTADSDFASIVKAHIEDE 300 +VAGADV + IEW ED+AIKRIVNSWPG FEA++AK LGF +D+DF SI++A++ D+ Sbjct: 265 RVAGADVARRIEWNEDDAIKRIVNSWPGDFEAQKAKELGFGSDADFDSIIQAYLRDQ 321 >ref|YP_004754144.1| nucleoside-diphosphate-sugar epimerase [Collimonas fungivorans Ter331] gb|AEK63321.1| Nucleoside-diphosphate-sugar epimerase [Collimonas fungivorans Ter331] Length = 324 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/297 (62%), Positives = 234/297 (78%), Gaps = 1/297 (0%) Query: 5 LTGSDGKQQTISRITLLDVVAAQGFDDARIEAVVGDIADAAVIERAITRDTQSIFHLAAI 64 L +G+ Q IS+ITL+DV AA GFDDAR+E V+GDI D A++ER IT T ++FHLAAI Sbjct: 26 LPDRNGQLQAISKITLVDVAAA-GFDDARLEQVIGDITDPALLERVITPQTAAVFHLAAI 84 Query: 65 VSGQAEADFELGMKINFDATRIILERARALGTKPRVVFTSSVAVFGGDLPAQVPDNALLM 124 VSGQAEADF+LGM+IN DA+R++LE RA PRV+FTSSVAVFGG LPA V D+ L Sbjct: 85 VSGQAEADFDLGMRINLDASRLLLECCRACANVPRVIFTSSVAVFGGALPAVVQDHTALN 144 Query: 125 PQSSYGAQKVMGELLINDYSRKDYIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNG 184 PQSSYG QK + ELL+NDYSRK ++DGR LR+PTISVRPG PN+AASSFASGIIREPLNG Sbjct: 145 PQSSYGTQKAIAELLLNDYSRKGFVDGRVLRLPTISVRPGKPNQAASSFASGIIREPLNG 204 Query: 185 QPSVCPVAPDTRMWLMSPRKAIDNLIHGHEINGADLGLARFLSIDGLSVSVRQMVDALEQ 244 QP++CPVAPD R+WL+SPRK I LIHG+ + LG +R +++ G+SV+V +MV ALE+ Sbjct: 205 QPAICPVAPDVRLWLLSPRKVIAALIHGYSLAADALGQSRTVNLPGISVTVAEMVAALER 264 Query: 245 VAGADVVKLIEWKEDEAIKRIVNSWPGSFEAKRAKALGFTADSDFASIVKAHIEDEM 301 VAG V +EW D AI RI++SWPG+++ RA LGF AD+DF IV+A+IED++ Sbjct: 265 VAGKPVAARVEWAHDPAIDRIISSWPGAWDTTRANVLGFVADADFDDIVRAYIEDDL 321 >ref|YP_623075.1| NAD-dependent epimerase/dehydratase [Burkholderia cenocepacia AU 1054] gb|ABF78102.1| NAD-dependent epimerase/dehydratase [Burkholderia cenocepacia AU 1054] Length = 323 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/299 (59%), Positives = 227/299 (75%) Query: 4 QLTGSDGKQQTISRITLLDVVAAQGFDDARIEAVVGDIADAAVIERAITRDTQSIFHLAA 63 +LTG DG+ + I + LLDVV F DAR+ ++VGDIAD AV++ AI T +IFHLAA Sbjct: 25 ELTGPDGRIEKIDELVLLDVVKGSDFGDARVTSIVGDIADRAVLDSAIDTQTGAIFHLAA 84 Query: 64 IVSGQAEADFELGMKINFDATRIILERARALGTKPRVVFTSSVAVFGGDLPAQVPDNALL 123 IVSGQAEADF+LGM+IN DA+R +LE RA G +PRVVFTSSVAV+GG LP V D+ L Sbjct: 85 IVSGQAEADFDLGMRINLDASRTLLEVCRARGHQPRVVFTSSVAVYGGALPDVVQDDTAL 144 Query: 124 MPQSSYGAQKVMGELLINDYSRKDYIDGRALRMPTISVRPGAPNKAASSFASGIIREPLN 183 PQSSYGA+K + ELL+ DY+R+ ++DGR LR+PTISVRPG PN AASSFASGIIREPLN Sbjct: 145 NPQSSYGAEKAIAELLLCDYARRGFVDGRVLRLPTISVRPGRPNAAASSFASGIIREPLN 204 Query: 184 GQPSVCPVAPDTRMWLMSPRKAIDNLIHGHEINGADLGLARFLSIDGLSVSVRQMVDALE 243 G+ SVCPV TR+WL+SPR AID L+ G EINGA LG R +++ GLSVSV +M+ AL Sbjct: 205 GEESVCPVPGSTRLWLLSPRGAIDALVAGCEINGAKLGNKRVINLPGLSVSVNEMIAALR 264 Query: 244 QVAGADVVKLIEWKEDEAIKRIVNSWPGSFEAKRAKALGFTADSDFASIVKAHIEDEMK 302 +VAG +VVKLI DE +++IV SWPG ++ RA+ALG D+ F ++++HI DE + Sbjct: 265 EVAGDEVVKLIRHAPDERVEKIVGSWPGRWDTSRAEALGLKGDTSFVDVIRSHIADEQR 323 >ref|YP_838786.1| NAD-dependent epimerase/dehydratase [Burkholderia cenocepacia HI2424] ref|YP_001778739.1| NAD-dependent epimerase/dehydratase [Burkholderia cenocepacia MC0-3] gb|ABK11893.1| NAD-dependent epimerase/dehydratase [Burkholderia cenocepacia HI2424] gb|ACA94249.1| NAD-dependent epimerase/dehydratase [Burkholderia cenocepacia MC0-3] Length = 323 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 179/299 (59%), Positives = 227/299 (75%) Query: 4 QLTGSDGKQQTISRITLLDVVAAQGFDDARIEAVVGDIADAAVIERAITRDTQSIFHLAA 63 +LTG DG+ + I + LLDVV F DAR+ ++VGDIAD AV++ AI T +IFHLAA Sbjct: 25 ELTGPDGRIEKIDELVLLDVVKGSDFGDARVTSIVGDIADRAVLDSAIDTQTGAIFHLAA 84 Query: 64 IVSGQAEADFELGMKINFDATRIILERARALGTKPRVVFTSSVAVFGGDLPAQVPDNALL 123 IVSGQAEADF+LGM+IN DA+R +LE RA G +PRVVFTSSVAV+GG LP V D+ L Sbjct: 85 IVSGQAEADFDLGMRINLDASRTLLEVCRARGHQPRVVFTSSVAVYGGALPDVVQDDTAL 144 Query: 124 MPQSSYGAQKVMGELLINDYSRKDYIDGRALRMPTISVRPGAPNKAASSFASGIIREPLN 183 PQSSYGA+K + ELL+ DY+R+ ++DGR LR+PTISVRPG PN AASSFASGIIREPLN Sbjct: 145 NPQSSYGAEKAIAELLLCDYARRGFVDGRVLRLPTISVRPGRPNAAASSFASGIIREPLN 204 Query: 184 GQPSVCPVAPDTRMWLMSPRKAIDNLIHGHEINGADLGLARFLSIDGLSVSVRQMVDALE 243 G+ SVCPV TR+WL+SPR AID L+ G EINGA LG R +++ GLSVSV +M+ AL Sbjct: 205 GEESVCPVPGSTRLWLLSPRGAIDALVAGCEINGAKLGNKRVINLPGLSVSVDEMIAALR 264 Query: 244 QVAGADVVKLIEWKEDEAIKRIVNSWPGSFEAKRAKALGFTADSDFASIVKAHIEDEMK 302 +VAG +VVKLI DE +++IV SWPG ++ RA+ALG D+ F ++++HI DE + Sbjct: 265 EVAGDEVVKLIRHAPDERVEKIVGSWPGRWDTSRAEALGLKGDTSFVDVIRSHIADEQR 323