BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0058.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776464.1| branched-chain amino acid ABC transporter pe... 401 e-110 ref|YP_004753422.1| putative ABC transport protein, substrate-bi... 348 7e-94 emb|CAM76012.1| urea/short-chain binding protein of ABC transpor... 335 5e-90 gb|ABK64099.2| putative ABC transport protein [Janthinobacterium... 319 3e-85 ref|YP_004386739.1| branched-chain amino acid ABC transporter pe... 318 9e-85 >ref|YP_003776464.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64556.1| ABC-type branched-chain amino acid transport system,periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 202/207 (97%), Positives = 205/207 (99%) Query: 1 VTRAREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFH 60 VTRAREWLDRDKVEAIADLTNSSVALAVQKLIK+KGGIAMYSGPATGALTTAECA NGFH Sbjct: 92 VTRAREWLDRDKVEAIADLTNSSVALAVQKLIKDKGGIAMYSGPATGALTTAECAPNGFH 151 Query: 61 WMFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPL 120 WMFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTV+GSVRHPL Sbjct: 152 WMFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVVGSVRHPL 211 Query: 121 NASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHA 180 NASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHA Sbjct: 212 NASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHA 271 Query: 181 LGLDAAQGLVYTDGFYWDYDEQTRGFS 207 LGL+AAQGLVYTDGFYWDYDEQTR FS Sbjct: 272 LGLEAAQGLVYTDGFYWDYDEQTRAFS 298 >ref|YP_004753422.1| putative ABC transport protein, substrate-binding component [Collimonas fungivorans Ter331] gb|AEK62599.1| putative ABC transport protein, substrate-binding component [Collimonas fungivorans Ter331] Length = 417 Score = 348 bits (892), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 172/206 (83%), Positives = 188/206 (91%) Query: 2 TRAREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHW 61 ++AREW+DRDKV+AIADLTNSSVALAVQ+LI++KGGIAMYSGPATG LT AECA NGFHW Sbjct: 101 SKAREWIDRDKVDAIADLTNSSVALAVQRLIRDKGGIAMYSGPATGVLTNAECAPNGFHW 160 Query: 62 MFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLN 121 MFDTYSQAAGAAAALTK+G KSWYFVTVDYAFG SLEKDA DVVK GGTV+GS+RHPLN Sbjct: 161 MFDTYSQAAGAAAALTKMGQKSWYFVTVDYAFGQSLEKDAGDVVKRLGGTVVGSIRHPLN 220 Query: 122 ASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHAL 181 ASD SSFLLQAQ+SKAQVIGLA+GG D VNAIKQARSF +G K+QRL ALLVFLSDVHAL Sbjct: 221 ASDLSSFLLQAQSSKAQVIGLANGGQDTVNAIKQARSFGIGAKNQRLAALLVFLSDVHAL 280 Query: 182 GLDAAQGLVYTDGFYWDYDEQTRGFS 207 GL+ AQGLVYTDGFYWD+D TR FS Sbjct: 281 GLNDAQGLVYTDGFYWDFDSDTRAFS 306 >emb|CAM76012.1| urea/short-chain binding protein of ABC transporter [Magnetospirillum gryphiswaldense MSR-1] Length = 407 Score = 335 bits (859), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 161/204 (78%), Positives = 178/204 (87%) Query: 4 AREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHWMF 63 AR+WL++DKV+A+ DLTNSSV+LAVQKLIKEKGGIAMYSGPAT LT +CA+NGFHWMF Sbjct: 91 ARQWLEQDKVDAMVDLTNSSVSLAVQKLIKEKGGIAMYSGPATTRLTNDDCAANGFHWMF 150 Query: 64 DTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLNAS 123 DTYSQAA AAALTKLG K+WYF+TVDYAFGHSLEKDA D V ANGGTVLG+VRHPLN S Sbjct: 151 DTYSQAAVGAAALTKLGLKNWYFITVDYAFGHSLEKDAGDQVTANGGTVLGAVRHPLNNS 210 Query: 124 DFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHALGL 183 DFSSFLLQAQ SKAQVIGLA+GG D VNAIKQA+ F +GGKDQ+L ALLVFLSDVHALGL Sbjct: 211 DFSSFLLQAQGSKAQVIGLANGGQDTVNAIKQAKEFGIGGKDQKLAALLVFLSDVHALGL 270 Query: 184 DAAQGLVYTDGFYWDYDEQTRGFS 207 AQGL Y DGFYWD D+ TR + Sbjct: 271 PTAQGLSYADGFYWDADDDTRALA 294 >gb|ABK64099.2| putative ABC transport protein [Janthinobacterium lividum] Length = 309 Score = 319 bits (817), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 155/182 (85%), Positives = 169/182 (92%), Gaps = 1/182 (0%) Query: 2 TRAREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHW 61 ++AREW+DRDKV+AIADLTNSSVAL+VQKL+KEKGGIAM+SGPATG LT +C+ NGFHW Sbjct: 128 SKAREWIDRDKVDAIADLTNSSVALSVQKLMKEKGGIAMFSGPATGRLTNEDCSPNGFHW 187 Query: 62 MFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLN 121 MFDTYSQAAG AAALTKLG KSWYFVTVDYAFGHSLEKDASDVVK NGGTVLG+VRHPLN Sbjct: 188 MFDTYSQAAGTAAALTKLGQKSWYFVTVDYAFGHSLEKDASDVVKRNGGTVLGAVRHPLN 247 Query: 122 ASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVG-GKDQRLVALLVFLSDVHA 180 ASDFSSFL+QAQ SKAQVIGLA+GG DVV+AIKQAR F +G GKDQRL ALLVFLSDVHA Sbjct: 248 ASDFSSFLVQAQGSKAQVIGLANGGADVVSAIKQAREFRIGSGKDQRLAALLVFLSDVHA 307 Query: 181 LG 182 LG Sbjct: 308 LG 309 >ref|YP_004386739.1| branched-chain amino acid ABC transporter periplasmic protein [Alicycliphilus denitrificans K601] gb|AEB83223.1| branched-chain amino acid ABC transporter periplasmic protein [Alicycliphilus denitrificans K601] Length = 405 Score = 318 bits (814), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 160/208 (76%), Positives = 185/208 (88%), Gaps = 2/208 (0%) Query: 2 TRAREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHW 61 T+AREWLDRDKV+A+ADLTNS+ ALAVQKLIKEKGGIAMYSGPAT LT +CA NGFHW Sbjct: 85 TKAREWLDRDKVDALADLTNSAGALAVQKLIKEKGGIAMYSGPATTRLTDEDCAENGFHW 144 Query: 62 MFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLN 121 MFDTYS A+GAAAALT+ G+KSW+FVTVDYAFGHSLEKDASD+VKANGGTVLGSVRHPLN Sbjct: 145 MFDTYSSASGAAAALTRNGDKSWFFVTVDYAFGHSLEKDASDMVKANGGTVLGSVRHPLN 204 Query: 122 ASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVG-GKD-QRLVALLVFLSDVH 179 ASDFSSF+LQAQ SKAQVIGLA+G D VNAIK AR F +G GK Q++ +LL+FL+DVH Sbjct: 205 ASDFSSFILQAQNSKAQVIGLANGAQDTVNAIKAAREFGIGTGKSGQKVASLLMFLTDVH 264 Query: 180 ALGLDAAQGLVYTDGFYWDYDEQTRGFS 207 +LGL AQGL++++GFYWD D++TR FS Sbjct: 265 SLGLKQAQGLMFSEGFYWDMDDKTRAFS 292