BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0041.p (184 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776477.1| SorC family transcription regulator protein ... 249 2e-64 ref|YP_002787781.1| transcriptional regulator, DeoR family [Dein... 184 6e-45 ref|YP_004255872.1| transcriptional regulator, DeoR family [Dein... 183 9e-45 ref|YP_003805228.1| DeoR family transcriptional regulator [Spiro... 182 1e-44 ref|YP_004169996.1| DeoR family transcriptional regulator [Deino... 182 3e-44 >ref|YP_003776477.1| SorC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64569.1| SorC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 114/155 (73%), Positives = 135/155 (87%) Query: 3 FAQNYGGRAHSFPVPAFFDYADTRTALWRERSIKAIRTLQNDAAILLFSIGAAETGSHIH 62 FAQNYG RAH PVPAFFDY +TRTALWRE+SIKAIR LQ A+ILLFSIGA TGS+IH Sbjct: 166 FAQNYGARAHHLPVPAFFDYPETRTALWREKSIKAIRDLQERASILLFSIGAEATGSYIH 225 Query: 63 TGGYLDKQDQQDIRRDDVVGDIATVFFRDDGSWRDVALNARSSGPDLDRFQRAAHSICVV 122 T GYL ++++Q +R + +VGDIATVFFR DGSWRDVA NAR+SGPD+D F RAAH++CVV Sbjct: 226 TAGYLGEEERQILRDEGLVGDIATVFFRADGSWRDVAFNARNSGPDMDCFTRAAHALCVV 285 Query: 123 SGKGKIPGLRAALLGGFINELVIDEPTARLLVQQL 157 SG GK+PGL+AAL GGFINEL+IDEP+ARLLV+Q+ Sbjct: 286 SGAGKLPGLKAALRGGFINELIIDEPSARLLVEQI 320 >ref|YP_002787781.1| transcriptional regulator, DeoR family [Deinococcus deserti VCD115] gb|ACO47679.1| putative transcriptional regulator, DeoR family [Deinococcus deserti VCD115] Length = 350 Score = 184 bits (466), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 85/155 (54%), Positives = 110/155 (70%), Gaps = 2/155 (1%) Query: 3 FAQNYGGRAHSFPVPAFFDYADTRTALWRERSIKAIRTLQNDAAILLFSIGAAETGS--H 60 FAQNY RAH FPVP FFD T+TA+WRERS++ + LQ A +LL+S+G + GS H Sbjct: 195 FAQNYSARAHLFPVPTFFDDPATKTAMWRERSVRHVVELQERADVLLYSVGTLDPGSPSH 254 Query: 61 IHTGGYLDKQDQQDIRRDDVVGDIATVFFRDDGSWRDVALNARSSGPDLDRFQRAAHSIC 120 +H GGYLD +DQQ + VVGDIATVF+R DGS+ D+ +NAR+SGPDL R H++C Sbjct: 255 VHVGGYLDPEDQQTLLTQGVVGDIATVFYRGDGSFADIPINARASGPDLTLTTRVTHAVC 314 Query: 121 VVSGKGKIPGLRAALLGGFINELVIDEPTARLLVQ 155 +VSG K+ LR AL GG +N L++DE TAR L+ Sbjct: 315 IVSGLAKVDALRGALNGGLMNTLIVDEITARTLLH 349 >ref|YP_004255872.1| transcriptional regulator, DeoR family [Deinococcus proteolyticus MRP] gb|ADY26255.1| transcriptional regulator, DeoR family [Deinococcus proteolyticus MRP] Length = 324 Score = 183 bits (465), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 87/161 (54%), Positives = 113/161 (70%), Gaps = 2/161 (1%) Query: 3 FAQNYGGRAHSFPVPAFFDYADTRTALWRERSIKAIRTLQNDAAILLFSIGA--AETGSH 60 FA+NYGGRAH FPVP FFD T+ +WRERS++ + LQ A +LL+S+G+ AE SH Sbjct: 163 FARNYGGRAHLFPVPTFFDDPHTKEMMWRERSVRQVLDLQARADLLLYSVGSPVAERPSH 222 Query: 61 IHTGGYLDKQDQQDIRRDDVVGDIATVFFRDDGSWRDVALNARSSGPDLDRFQRAAHSIC 120 ++ G LD DQ ++ R VVGDIATVFFR DGSW D+ +NAR+SGPDL S+C Sbjct: 223 VYAAGSLDGADQAELSRLGVVGDIATVFFRADGSWEDLPINARASGPDLALIAAHPQSVC 282 Query: 121 VVSGKGKIPGLRAALLGGFINELVIDEPTARLLVQQLDEDK 161 VVSG GK+P L AAL GG + L++DEPTA L++Q+ E + Sbjct: 283 VVSGLGKVPALHAALRGGLMKRLIVDEPTALALLEQVTEPE 323 >ref|YP_003805228.1| DeoR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gb|ADK82634.1| transcriptional regulator, DeoR family [Spirochaeta smaragdinae DSM 11293] Length = 327 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 82/157 (52%), Positives = 117/157 (74%), Gaps = 2/157 (1%) Query: 3 FAQNYGGRAHSFPVPAFFDYADTRTALWRERSIKAIRTLQNDAAILLFSIGAAETG--SH 60 F++NY FPVP FFDY +T+ AL+RERSIK I QN+A ILL+S+GA + G SH Sbjct: 164 FSENYEASYLLFPVPTFFDYRETKEALFRERSIKKIIETQNNADILLYSVGAVDAGVPSH 223 Query: 61 IHTGGYLDKQDQQDIRRDDVVGDIATVFFRDDGSWRDVALNARSSGPDLDRFQRAAHSIC 120 I++ GYL+ +D Q + VVGD+ATVFFR++G+++D+ +N R+SGP L+ +++A +IC Sbjct: 224 IYSSGYLEPEDIQSLEEQGVVGDLATVFFRENGTYKDIPINQRASGPSLELYKKAPRAIC 283 Query: 121 VVSGKGKIPGLRAALLGGFINELVIDEPTARLLVQQL 157 VVSG+ KI GL AAL G++ EL++DEPTA LL Q++ Sbjct: 284 VVSGRAKIHGLHAALRAGYVKELIVDEPTAHLLWQRM 320 >ref|YP_004169996.1| DeoR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gb|ADV66331.1| transcriptional regulator, DeoR family [Deinococcus maricopensis DSM 21211] Length = 320 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 86/156 (55%), Positives = 113/156 (72%), Gaps = 2/156 (1%) Query: 3 FAQNYGGRAHSFPVPAFFDYADTRTALWRERSIKAIRTLQNDAAILLFSIGA--AETGSH 60 A+NY RA+ FPVP FFD T+ A+WRERS++ + LQ+ A +LL+S+G+ A T SH Sbjct: 164 LARNYDARAYLFPVPTFFDDPHTKAAMWRERSVQHVLELQDRADVLLYSVGSTNARTPSH 223 Query: 61 IHTGGYLDKQDQQDIRRDDVVGDIATVFFRDDGSWRDVALNARSSGPDLDRFQRAAHSIC 120 ++ G YLD D + ++RD VVGDIATVFFR DG+ +V +NAR+SGPDL R H+IC Sbjct: 224 VYAGAYLDPADLEALQRDGVVGDIATVFFRADGTHANVPMNARASGPDLTLMTRVPHAIC 283 Query: 121 VVSGKGKIPGLRAALLGGFINELVIDEPTARLLVQQ 156 VVSG GK+ LRAAL G +N LV+DEPTAR L+Q+ Sbjct: 284 VVSGLGKVEALRAALRGRLMNTLVVDEPTARALLQE 319