BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0038.p (350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum... 532 e-149 gb|EFV84756.1| sugar ABC transporter [Achromobacter xylosoxidans... 461 e-128 ref|YP_003976211.1| sn-glycerol-3-phosphate import ATP-binding p... 461 e-128 ref|ZP_06685254.1| ABC superfamily ATP binding cassette transpor... 460 e-127 gb|EGP46438.1| sn-glycerol-3-phosphate import ATP-binding protei... 457 e-126 >ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ64570.1| ABC-type sugar transport systems, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 349 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 265/350 (75%), Positives = 298/350 (85%), Gaps = 5/350 (1%) Query: 1 MAAISLKGITKNWGDAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDTPSTGAI 60 MAAISL+G+ K+WG+AQAV+ IDFEVK+G FTVLLGPSGCGKSTTLRLIAGLD PS+G+I Sbjct: 1 MAAISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSI 60 Query: 61 RIGERDVTNLPPAQRKIAMVFQSYALFPHLNVRDNILFGVRVRKEPARHFDERLKRVADI 120 IG RDVT LPPAQRKI+MVFQSYALFPHL+VRDNILFGVRVRKEP ++ RLKRVADI Sbjct: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADI 120 Query: 121 LGLSHLLDRRPGQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL+HLL+RRP QLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ Sbjct: 121 LGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 Query: 181 QQLNMTMIYVTHDQTEAMSMADQVILLRDGKIEQNAPPAELYAQPASVFAARFIGTPPMN 240 QQLNMTM+YVTHDQTEAMSMADQVILLR+G+IEQ+A PA+LYAQPA+ FAARFIGTPPMN Sbjct: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 Query: 241 ILPLSNSAAGLVIEGSNGPVIHPHNVDEEWQLGVRPEHIHLV---GQGIAATVDTIEYFG 297 +LPL A GLVI GS+ VI WQLG+RPEHI L + A V+T+EYFG Sbjct: 241 LLPLEPHAEGLVISGSD--VILRDLGQTPWQLGLRPEHIRLADASDSSVPAVVETVEYFG 298 Query: 298 ADTIVGCRVGQASLLMRVPGQLTLVPGDAIQLGWERGNQYFFDRKSGLRR 347 ADTI+G R+G ASLL+R PGQ L GD ++L W+ +QYFFD SGLRR Sbjct: 299 ADTIIGARIGAASLLVRAPGQHRLGAGDPVRLAWDARDQYFFDPASGLRR 348 >gb|EFV84756.1| sugar ABC transporter [Achromobacter xylosoxidans C54] Length = 351 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/346 (65%), Positives = 277/346 (80%), Gaps = 2/346 (0%) Query: 1 MAAISLKGITKNWGDAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDTPSTGAI 60 M++I L +TK +G A A+ G+ F V +G FTVLLGPSGCGKSTTLR+IAGLDTP++G I Sbjct: 1 MSSIVLDNLTKQYGGAAAIHGVSFTVPAGSFTVLLGPSGCGKSTTLRMIAGLDTPTSGTI 60 Query: 61 RIGERDVTNLPPAQRKIAMVFQSYALFPHLNVRDNILFGVRVRKEPARHFDERLKRVADI 120 RIG+RDVT LPPA+R+I+MVFQSYALFPHL+VR+NILFG++VRKEPAR +D RL+RVA + Sbjct: 61 RIGDRDVTQLPPAKRRISMVFQSYALFPHLSVRENILFGLKVRKEPARDYDRRLQRVASL 120 Query: 121 LGLSHLLDRRPGQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL HLLDR+P QLSGGQQQRVALGRA+I++APVCLMDEPLSNLDAQLR EMRREIRALQ Sbjct: 121 LGLGHLLDRKPSQLSGGQQQRVALGRAVISEAPVCLMDEPLSNLDAQLRHEMRREIRALQ 180 Query: 181 QQLNMTMIYVTHDQTEAMSMADQVILLRDGKIEQNAPPAELYAQPASVFAARFIGTPPMN 240 Q L +TM+YVTHDQTEAMSMADQV+LLR G+IEQ+ P LYA+PAS FAARFIGTPPMN Sbjct: 181 QDLGITMVYVTHDQTEAMSMADQVVLLRGGQIEQHDTPDGLYARPASEFAARFIGTPPMN 240 Query: 241 ILPLSNSAAGLVIEGSNGPVIHPHNVDEEWQLGVRPEHIHLVGQGIAATVDTIEYFGADT 300 ++ L VI G++GP I + +LGVRPEHI + GIAATV+++EYFGAD+ Sbjct: 241 LIKLMPLQGATVIAGTHGPAI-AGAPEGAAKLGVRPEHIRIDSDGIAATVESVEYFGADS 299 Query: 301 IVGCRVGQA-SLLMRVPGQLTLVPGDAIQLGWERGNQYFFDRKSGL 345 IV CR+G + + +RV G L G+A++L W Q+FF S + Sbjct: 300 IVVCRIGDSGGIAVRVGGHLRARAGEALRLSWPAEQQHFFAADSAV 345 >ref|YP_003976211.1| sn-glycerol-3-phosphate import ATP-binding protein UgpC 1 [Achromobacter xylosoxidans A8] gb|ADP13496.1| sn-glycerol-3-phosphate import ATP-binding protein UgpC 1 [Achromobacter xylosoxidans A8] Length = 351 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 225/346 (65%), Positives = 276/346 (79%), Gaps = 2/346 (0%) Query: 1 MAAISLKGITKNWGDAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDTPSTGAI 60 M++I L +TK +G+A A+ G+ F V +G FTVLLGPSGCGKSTTLR+IAGLDTP++G I Sbjct: 1 MSSIVLDNLTKQYGNAAAIHGVSFTVPAGSFTVLLGPSGCGKSTTLRMIAGLDTPTSGTI 60 Query: 61 RIGERDVTNLPPAQRKIAMVFQSYALFPHLNVRDNILFGVRVRKEPARHFDERLKRVADI 120 IG+RDVT LPPA+R+I+MVFQSYALFPHL+VR+NILFG++VRKEPAR +D RL+RVAD+ Sbjct: 61 HIGDRDVTQLPPAKRRISMVFQSYALFPHLSVRENILFGLKVRKEPARDYDRRLQRVADL 120 Query: 121 LGLSHLLDRRPGQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGLSHLLDR+P QLSGGQQQRVALGRA+I++APVCLMDEPLSNLDAQLR EMRREIRALQ Sbjct: 121 LGLSHLLDRKPSQLSGGQQQRVALGRAVISEAPVCLMDEPLSNLDAQLRHEMRREIRALQ 180 Query: 181 QQLNMTMIYVTHDQTEAMSMADQVILLRDGKIEQNAPPAELYAQPASVFAARFIGTPPMN 240 Q L +TM+YVTHDQTEAMSMADQV+LLR GKIEQ+ P LYA+PA+ FAARFIGTPPMN Sbjct: 181 QDLGITMVYVTHDQTEAMSMADQVVLLRGGKIEQHDTPDALYARPATEFAARFIGTPPMN 240 Query: 241 ILPLSNSAAGLVIEGSNGPVIHPHNVDEEWQLGVRPEHIHLVGQGIAATVDTIEYFGADT 300 ++ L++ VI G++ +LGVRPEHI + GIAA V+++EYFGAD+ Sbjct: 241 LIGLASLQGATVIAGTH-GPAIAGAPAGAMKLGVRPEHIRIDPNGIAAKVESVEYFGADS 299 Query: 301 IVGCRVGQAS-LLMRVPGQLTLVPGDAIQLGWERGNQYFFDRKSGL 345 IV CRVG S + +RV G L G+ + L W+ G Q+FF S + Sbjct: 300 IVVCRVGDTSGVAVRVGGHLRASAGETLGLSWQDGQQHFFAADSAV 345 >ref|ZP_06685254.1| ABC superfamily ATP binding cassette transporter, ABC protein [Achromobacter piechaudii ATCC 43553] gb|EFF77871.1| ABC superfamily ATP binding cassette transporter, ABC protein [Achromobacter piechaudii ATCC 43553] Length = 351 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 229/346 (66%), Positives = 279/346 (80%), Gaps = 2/346 (0%) Query: 1 MAAISLKGITKNWGDAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDTPSTGAI 60 M++I L +TK +G A A+ G+ F V +G FTVLLGPSGCGKSTTLR+IAGLDTP++G I Sbjct: 1 MSSIVLDNLTKQYGSAAAIHGVSFTVPAGSFTVLLGPSGCGKSTTLRMIAGLDTPTSGTI 60 Query: 61 RIGERDVTNLPPAQRKIAMVFQSYALFPHLNVRDNILFGVRVRKEPARHFDERLKRVADI 120 RIGERDVT LPPA+R+I+MVFQSYALFPHL+VR+NILFG++VRKEPAR F+ RL+RVA + Sbjct: 61 RIGERDVTQLPPAKRRISMVFQSYALFPHLSVRENILFGLKVRKEPARDFERRLQRVASL 120 Query: 121 LGLSHLLDRRPGQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL HLLDR+P QLSGGQQQRVALGRA+I++APVCLMDEPLSNLDAQLR EMRREIRALQ Sbjct: 121 LGLGHLLDRKPSQLSGGQQQRVALGRAVISEAPVCLMDEPLSNLDAQLRHEMRREIRALQ 180 Query: 181 QQLNMTMIYVTHDQTEAMSMADQVILLRDGKIEQNAPPAELYAQPASVFAARFIGTPPMN 240 Q L +TM+YVTHDQTEAMSMADQV+LLR G+IEQ+ P LYA+PAS FAARFIGTPPMN Sbjct: 181 QDLGITMVYVTHDQTEAMSMADQVVLLRGGQIEQHDTPDGLYARPASEFAARFIGTPPMN 240 Query: 241 ILPLSNSAAGLVIEGSNGPVIHPHNVDEEWQLGVRPEHIHLVGQGIAATVDTIEYFGADT 300 ++ L+ ++ VI G+ GPVI + +LGVRPEHI + GI A V+++EYFGAD+ Sbjct: 241 LIGLAAASGAAVIAGTQGPVI-ANAPAGAVKLGVRPEHIRIDSAGIPAIVESVEYFGADS 299 Query: 301 IVGCRVGQAS-LLMRVPGQLTLVPGDAIQLGWERGNQYFFDRKSGL 345 IV CRVG S + +RV G L G+A+ L W+ G Q+FF S + Sbjct: 300 IVVCRVGDTSGVAVRVGGHLRARAGEALGLSWQDGQQHFFAADSAV 345 >gb|EGP46438.1| sn-glycerol-3-phosphate import ATP-binding protein UgpC 1 [Achromobacter xylosoxidans AXX-A] Length = 351 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 226/348 (64%), Positives = 276/348 (79%), Gaps = 6/348 (1%) Query: 1 MAAISLKGITKNWGDAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDTPSTGAI 60 M++I L +TK +G A A+ G+ F V +G FTVLLGPSGCGKSTTLR+IAGLDTP++G I Sbjct: 1 MSSIVLDNLTKQYGGAAAIHGVSFTVPAGSFTVLLGPSGCGKSTTLRMIAGLDTPTSGTI 60 Query: 61 RIGERDVTNLPPAQRKIAMVFQSYALFPHLNVRDNILFGVRVRKEPARHFDERLKRVADI 120 RIG+RDVT LPPA+R+I+MVFQSYALFPHL+VR+NILFG+RVR+EPAR +D RL+RVA + Sbjct: 61 RIGDRDVTQLPPAKRRISMVFQSYALFPHLSVRENILFGLRVRREPARDYDRRLQRVASL 120 Query: 121 LGLSHLLDRRPGQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL HLLDR+P QLSGGQQQRVALGRA+I++APVCLMDEPLSNLDAQLR EMRREIRALQ Sbjct: 121 LGLVHLLDRKPSQLSGGQQQRVALGRAVISEAPVCLMDEPLSNLDAQLRHEMRREIRALQ 180 Query: 181 QQLNMTMIYVTHDQTEAMSMADQVILLRDGKIEQNAPPAELYAQPASVFAARFIGTPPMN 240 Q L +TM+YVTHDQTEAMSMADQV+LLR G+IEQ+ P LYA+PAS FAARFIGTPPMN Sbjct: 181 QDLGITMVYVTHDQTEAMSMADQVVLLRGGQIEQHDTPDGLYARPASEFAARFIGTPPMN 240 Query: 241 ILPLSNSAAGLVIEGSNGPVI--HPHNVDEEWQLGVRPEHIHLVGQGIAATVDTIEYFGA 298 ++ L VI G++GP I P +LGVRPEHI + G G ATV+++EYFGA Sbjct: 241 LINLMPLQGATVIAGTHGPAIAGAPQGA---AKLGVRPEHIRIDGDGFPATVESVEYFGA 297 Query: 299 DTIVGCRVGQA-SLLMRVPGQLTLVPGDAIQLGWERGNQYFFDRKSGL 345 D+IV CR+G + + +RV G L G+A++L W Q+FF S + Sbjct: 298 DSIVVCRIGDSGGVAVRVGGHLRARAGEALRLSWPDEQQHFFAADSAV 345