BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0035.p (174 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776480.1| sugar ABC transporter permease [Herbaspirill... 291 3e-77 ref|YP_001628675.1| glycerol-3-phosphat transport system, permea... 230 7e-59 ref|NP_879022.1| inner membrane component of binding-protein-dep... 229 9e-59 ref|YP_003976209.1| binding-protein-dependent transporter inner ... 228 3e-58 ref|ZP_06685252.1| ABC superfamily ATP binding cassette transpor... 227 5e-58 >ref|YP_003776480.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64572.1| ABC-type sugar transport systems, permease component protein [Herbaspirillum seropedicae SmR1] Length = 291 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 141/168 (83%), Positives = 154/168 (91%) Query: 1 MNRTQFSITPWLLLMPAMVLLIAFTHYPAVATIWHSFFSTPKGASPSVFVGMENYALMAD 60 M R S+ PWLLL PAMVLLIAFTHYPA+AT+WHSFFSTPKG PSVFVG+ENY LMAD Sbjct: 1 MKRLPSSVLPWLLLSPAMVLLIAFTHYPALATLWHSFFSTPKGVRPSVFVGLENYRLMAD 60 Query: 61 DPVFWRALFNNLWFALGTIPVSIALAIMMALWVNDKLLGRGLLRLAYFTPTVLPMIAVAN 120 DPVFW+AL NNLWFALGTIP++IALAI+MALWVN+KL GRG+LRLAYFTPTVLPMIAVAN Sbjct: 61 DPVFWQALCNNLWFALGTIPLAIALAILMALWVNEKLAGRGVLRLAYFTPTVLPMIAVAN 120 Query: 121 IWLFFYTPQYGLLEQLTNALGLPSHNWLGNPDTVLGCMMVVAIWKEAG 168 IWLFFYTPQYGLLEQ+T ALGLPSHNWLGNP TVLG +MVVA+WKEAG Sbjct: 121 IWLFFYTPQYGLLEQITGALGLPSHNWLGNPQTVLGALMVVAVWKEAG 168 >ref|YP_001628675.1| glycerol-3-phosphat transport system, permease component [Bordetella petrii DSM 12804] emb|CAP40404.1| Glycerol-3-phosphat transport system, permease component [Bordetella petrii] Length = 291 Score = 230 bits (586), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 118/169 (69%), Positives = 142/169 (84%) Query: 1 MNRTQFSITPWLLLMPAMVLLIAFTHYPAVATIWHSFFSTPKGASPSVFVGMENYALMAD 60 MNR+ ++ WLLL+PA+VLL AFTHYPA+AT+WHSFFSTP+G+ P+ FVG+ENYA+M D Sbjct: 1 MNRSLQAVYGWLLLLPALVLLAAFTHYPALATLWHSFFSTPRGSRPARFVGLENYAVMGD 60 Query: 61 DPVFWRALFNNLWFALGTIPVSIALAIMMALWVNDKLLGRGLLRLAYFTPTVLPMIAVAN 120 DPVFW+AL+NNLWFALGTIP+SIA+A++MALWVN L GRG LR+AYFTPTVLPM+AVAN Sbjct: 61 DPVFWQALWNNLWFALGTIPLSIAIALVMALWVNRNLAGRGFLRMAYFTPTVLPMVAVAN 120 Query: 121 IWLFFYTPQYGLLEQLTNALGLPSHNWLGNPDTVLGCMMVVAIWKEAGL 169 IWLFFYTPQYGL+ Q+ + G NWLG DT L +MVV IWKEAG Sbjct: 121 IWLFFYTPQYGLIAQVMHWFGAAGPNWLGTRDTALPALMVVTIWKEAGF 169 >ref|NP_879022.1| inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] ref|NP_886476.1| inner membrane component of binding-protein-dependent transport system [Bordetella parapertussis 12822] ref|NP_891468.1| inner membrane component of binding-protein-dependent transport system [Bordetella bronchiseptica RB50] emb|CAE35298.1| inner membrane component of binding-protein-dependent transport system [Bordetella bronchiseptica RB50] emb|CAE40500.1| inner membrane component of binding-protein-dependent transport system [Bordetella pertussis Tohama I] emb|CAE39627.1| inner membrane component of binding-protein-dependent transport system [Bordetella parapertussis] gb|AEE65626.1| inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] Length = 291 Score = 229 bits (585), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 117/169 (69%), Positives = 142/169 (84%) Query: 1 MNRTQFSITPWLLLMPAMVLLIAFTHYPAVATIWHSFFSTPKGASPSVFVGMENYALMAD 60 M+RT ++ WLLL+PA+VLL AFTHYPA+AT+WHSFFSTPKG+ P+ FVG+ENYAL+ D Sbjct: 1 MSRTTQAVYGWLLLLPAVVLLAAFTHYPALATLWHSFFSTPKGSRPARFVGLENYALLRD 60 Query: 61 DPVFWRALFNNLWFALGTIPVSIALAIMMALWVNDKLLGRGLLRLAYFTPTVLPMIAVAN 120 DPVFW++L+NNLWFALGTIP SIA+A+ MALWVN KL GRG LR+AYFTPTVLPM+AVAN Sbjct: 61 DPVFWQSLWNNLWFALGTIPTSIAIALAMALWVNGKLHGRGFLRMAYFTPTVLPMVAVAN 120 Query: 121 IWLFFYTPQYGLLEQLTNALGLPSHNWLGNPDTVLGCMMVVAIWKEAGL 169 IWLFFYTPQYGL+ Q+ GL NWLG+ DT L +M+V +WKE+G Sbjct: 121 IWLFFYTPQYGLIAQVMQWFGLAGPNWLGSRDTALPALMMVTVWKESGF 169 >ref|YP_003976209.1| binding-protein-dependent transporter inner membrane component family protein 3 [Achromobacter xylosoxidans A8] gb|ADP13494.1| binding-protein-dependent transport system inner membrane component family protein 3 [Achromobacter xylosoxidans A8] Length = 291 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 116/169 (68%), Positives = 141/169 (83%) Query: 1 MNRTQFSITPWLLLMPAMVLLIAFTHYPAVATIWHSFFSTPKGASPSVFVGMENYALMAD 60 M+R+ ++ WLLL+PA+VLL AFTHYPAVAT+WHSFFSTPKGA P+ FVG++NYA+M D Sbjct: 1 MSRSLNALYGWLLLLPAIVLLAAFTHYPAVATLWHSFFSTPKGARPARFVGLDNYAVMRD 60 Query: 61 DPVFWRALFNNLWFALGTIPVSIALAIMMALWVNDKLLGRGLLRLAYFTPTVLPMIAVAN 120 DPVFW++L+NNLWFALGTIP SI +A++MALWVN L GRG LR+AYFTPTVLPM+AVAN Sbjct: 61 DPVFWQSLWNNLWFALGTIPTSIGIALIMALWVNRNLSGRGFLRMAYFTPTVLPMVAVAN 120 Query: 121 IWLFFYTPQYGLLEQLTNALGLPSHNWLGNPDTVLGCMMVVAIWKEAGL 169 IWLFFYTPQYGL+ Q+ G P NWLGN +T L +M+V +WKEAG Sbjct: 121 IWLFFYTPQYGLIAQVMQLFGSPGPNWLGNRETALPALMLVTVWKEAGF 169 >ref|ZP_06685252.1| ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] gb|EFF77869.1| ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] Length = 291 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 115/169 (68%), Positives = 141/169 (83%) Query: 1 MNRTQFSITPWLLLMPAMVLLIAFTHYPAVATIWHSFFSTPKGASPSVFVGMENYALMAD 60 M+R+ ++ WLLL+PA+VLL AFTHYPA+AT+WHSFFSTPKGA P+ FVG+ENYA+M D Sbjct: 1 MSRSLHALYGWLLLLPAIVLLAAFTHYPALATLWHSFFSTPKGARPARFVGLENYAVMRD 60 Query: 61 DPVFWRALFNNLWFALGTIPVSIALAIMMALWVNDKLLGRGLLRLAYFTPTVLPMIAVAN 120 DPVFW++L+NNLWFALGTIP SI +A++MALWVN L GRG LR+AYFTPTVLPM+AVAN Sbjct: 61 DPVFWQSLWNNLWFALGTIPTSIGIALIMALWVNRNLRGRGFLRMAYFTPTVLPMVAVAN 120 Query: 121 IWLFFYTPQYGLLEQLTNALGLPSHNWLGNPDTVLGCMMVVAIWKEAGL 169 IWLFFYTPQYGL+ Q+ G P NWLGN +T L +M+V +WKE+G Sbjct: 121 IWLFFYTPQYGLIAQVMGWFGSPGPNWLGNRETALPALMLVTVWKESGF 169