BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0033.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003976208.1| binding-protein-dependent transporter inner ... 440 e-121 ref|ZP_06685251.1| ABC superfamily ATP binding cassette transpor... 439 e-121 gb|EFV84753.1| glycerol-3-phosphat transport system [Achromobact... 435 e-120 ref|YP_003776481.1| sugar ABC transporter permease [Herbaspirill... 433 e-119 ref|YP_012374.1| ABC transporter permease [Desulfovibrio vulgari... 426 e-117 >ref|YP_003976208.1| binding-protein-dependent transporter inner membrane component family protein 2 [Achromobacter xylosoxidans A8] gb|ADP13493.1| binding-protein-dependent transport system inner membrane component family protein 2 [Achromobacter xylosoxidans A8] Length = 266 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/262 (78%), Positives = 242/262 (92%) Query: 16 LETVAAWVLGLLWLLPLIYAIWTAFHPAEFATRFSLTAPLTLQNFVNAWNAAPFPRYFLN 75 L+T+ AW LGLLW+LPL YA+W AFHP +ATRF L APLTL NFV AWNAAPFPRYFLN Sbjct: 5 LDTLGAWALGLLWILPLAYAMWAAFHPPAYATRFDLFAPLTLDNFVRAWNAAPFPRYFLN 64 Query: 76 TFMLVTMILVAQMVLATMAAYAFSRYRFRGDNIMFMLVLMQLMVMPDILIVENYNTMNLL 135 TF+LVTM+L AQ+VL+T+A YAF+R+ FRG + +FMLVL+QLM+MPD+L+VENY +M+ L Sbjct: 65 TFLLVTMVLAAQLVLSTLAGYAFARFEFRGRDFVFMLVLLQLMIMPDVLLVENYRSMSQL 124 Query: 136 GLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAMQVLWKVYVPLAKPI 195 G+RDT+ +IGLPYFASAFGIFLLRQTFKTVPREL+EAA +EGA+A+QVLWKVYVPLAKPI Sbjct: 125 GIRDTVFAIGLPYFASAFGIFLLRQTFKTVPRELEEAARMEGANALQVLWKVYVPLAKPI 184 Query: 196 YLAFGLVSISTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSIITSATLMTSAP 255 Y+A+GLVS+S HWNNFLWPLI+TNSVESRPLTVGLQVFSSTDQG+DWS+IT+ATLM++AP Sbjct: 185 YVAYGLVSVSHHWNNFLWPLIITNSVESRPLTVGLQVFSSTDQGIDWSVITAATLMSAAP 244 Query: 256 LLLAFLLFQRQFVQSFMRAGIR 277 LL+AFLLFQRQFVQSFMRAGIR Sbjct: 245 LLIAFLLFQRQFVQSFMRAGIR 266 >ref|ZP_06685251.1| ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] gb|EFF77868.1| ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] Length = 266 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 204/262 (77%), Positives = 240/262 (91%) Query: 16 LETVAAWVLGLLWLLPLIYAIWTAFHPAEFATRFSLTAPLTLQNFVNAWNAAPFPRYFLN 75 L+T+ AW LGLLW+LPL YA+W AFHP +ATRF L APLTL NF AW AAPFPRYFLN Sbjct: 5 LDTLGAWALGLLWILPLAYAMWAAFHPPAYATRFELFAPLTLDNFARAWQAAPFPRYFLN 64 Query: 76 TFMLVTMILVAQMVLATMAAYAFSRYRFRGDNIMFMLVLMQLMVMPDILIVENYNTMNLL 135 TF+LVTM+L AQ+VL+T+A YAF+R+ FRG + +FMLVL+QLM+MPD+L+VENY +M+ L Sbjct: 65 TFLLVTMVLAAQLVLSTLAGYAFARFEFRGRDFVFMLVLLQLMIMPDVLLVENYRSMSQL 124 Query: 136 GLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAMQVLWKVYVPLAKPI 195 G+RDT+ +IGLPYFASAFGIFLLRQTFKTVPREL+EAA +EGASAMQ+LWKVYVPLAKPI Sbjct: 125 GIRDTVFAIGLPYFASAFGIFLLRQTFKTVPRELEEAARMEGASAMQILWKVYVPLAKPI 184 Query: 196 YLAFGLVSISTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSIITSATLMTSAP 255 Y+A+GLVS+S HWNNFLWPLI+TNSVESRPLTVGLQVFSSTDQG+DWS+IT+ATLM++AP Sbjct: 185 YVAYGLVSVSHHWNNFLWPLIITNSVESRPLTVGLQVFSSTDQGIDWSVITAATLMSAAP 244 Query: 256 LLLAFLLFQRQFVQSFMRAGIR 277 LL+AFLLFQRQFVQSFMRAGIR Sbjct: 245 LLIAFLLFQRQFVQSFMRAGIR 266 >gb|EFV84753.1| glycerol-3-phosphat transport system [Achromobacter xylosoxidans C54] gb|EGP46435.1| binding-protein-dependent transport system inner membrane component family protein 2 [Achromobacter xylosoxidans AXX-A] Length = 266 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/262 (77%), Positives = 239/262 (91%) Query: 16 LETVAAWVLGLLWLLPLIYAIWTAFHPAEFATRFSLTAPLTLQNFVNAWNAAPFPRYFLN 75 L+T+ AW LGLLW+LPL YA+W AFHP +ATRF L APLTL NF AW AAPFPRYF N Sbjct: 5 LDTLGAWALGLLWILPLAYAVWAAFHPPAYATRFDLFAPLTLDNFARAWQAAPFPRYFAN 64 Query: 76 TFMLVTMILVAQMVLATMAAYAFSRYRFRGDNIMFMLVLMQLMVMPDILIVENYNTMNLL 135 TF+LVTM+L AQ+VL+T+A YAF+R+ FRG + +FMLVL+QLM+MPD+L+VENY +M+ L Sbjct: 65 TFLLVTMVLAAQLVLSTLAGYAFARFEFRGRDFVFMLVLLQLMIMPDVLLVENYRSMSQL 124 Query: 136 GLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAMQVLWKVYVPLAKPI 195 G+RDT+ +IGLPYFASAFGIFLLRQTFKTVPREL+EAA +EGA+A+QVLWKVYVPLAKPI Sbjct: 125 GIRDTVFAIGLPYFASAFGIFLLRQTFKTVPRELEEAARMEGANALQVLWKVYVPLAKPI 184 Query: 196 YLAFGLVSISTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSIITSATLMTSAP 255 Y+A+GLVS+S HWNNFLWPLI+TNSVESRPLTVGLQVFSSTDQG+DWS+IT+ATLM++AP Sbjct: 185 YVAYGLVSVSHHWNNFLWPLIITNSVESRPLTVGLQVFSSTDQGIDWSVITAATLMSAAP 244 Query: 256 LLLAFLLFQRQFVQSFMRAGIR 277 LL+AFLLFQRQFVQSFMRAGIR Sbjct: 245 LLIAFLLFQRQFVQSFMRAGIR 266 >ref|YP_003776481.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64573.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 239/272 (87%), Positives = 260/272 (95%) Query: 6 TNPFGERNKILETVAAWVLGLLWLLPLIYAIWTAFHPAEFATRFSLTAPLTLQNFVNAWN 65 T+PF +R++ LETV+AWVL LLWLLPL+YA+WTAFHPA FATRF+L APLTLQNFVNAW Sbjct: 5 TSPFADRHRALETVSAWVLALLWLLPLLYALWTAFHPAAFATRFTLDAPLTLQNFVNAWQ 64 Query: 66 AAPFPRYFLNTFMLVTMILVAQMVLATMAAYAFSRYRFRGDNIMFMLVLMQLMVMPDILI 125 AAPFPRYFLNTF+LVTMIL AQ+VLAT+AAYAF+R+ FRG N+MFMLVL+QLMVMPDILI Sbjct: 65 AAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILI 124 Query: 126 VENYNTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAMQVLW 185 VENY TMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASA Q+L Sbjct: 125 VENYQTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILM 184 Query: 186 KVYVPLAKPIYLAFGLVSISTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSII 245 +VYVPLA+PIY+AFGLVS+STHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSII Sbjct: 185 QVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSII 244 Query: 246 TSATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 277 T+ATLMTSAPLLLAFLLFQRQFVQSFMRAGIR Sbjct: 245 TAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 >ref|YP_012374.1| ABC transporter permease [Desulfovibrio vulgaris str. Hildenborough] ref|YP_965673.1| binding-protein-dependent transport systems inner membrane component [Desulfovibrio vulgaris DP4] gb|AAS97634.1| ABC transporter, permease protein [Desulfovibrio vulgaris str. Hildenborough] gb|ABM27246.1| carbohydrate ABC transporter membrane protein 2, CUT1 family [Desulfovibrio vulgaris DP4] gb|ADP88063.1| binding-protein-dependent transport systems inner membrane component [Desulfovibrio vulgaris RCH1] Length = 277 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/276 (72%), Positives = 239/276 (86%), Gaps = 2/276 (0%) Query: 4 QATNPFGERN--KILETVAAWVLGLLWLLPLIYAIWTAFHPAEFATRFSLTAPLTLQNFV 61 + TN + R + L+T AAW L ++W LPL+YAIWTAFHP+ ++TRF+L APLTL+NFV Sbjct: 2 KQTNIYDSRGLARALDTTAAWTLAIMWALPLLYAIWTAFHPSAYSTRFTLNAPLTLENFV 61 Query: 62 NAWNAAPFPRYFLNTFMLVTMILVAQMVLATMAAYAFSRYRFRGDNIMFMLVLMQLMVMP 121 AW+AAPF YF+NT +LVTM+L AQ+VL T+AAYAF++Y FRG NIMF LVLMQLM+MP Sbjct: 62 TAWHAAPFALYFVNTVLLVTMVLAAQLVLCTLAAYAFAKYDFRGKNIMFALVLMQLMIMP 121 Query: 122 DILIVENYNTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAM 181 D+L+VENY TM +G+ D+ L+IGLPY ASAFGIFLLRQTFK++P+ELDEAA VEGAS + Sbjct: 122 DVLVVENYRTMASIGVLDSTLAIGLPYMASAFGIFLLRQTFKSIPKELDEAAAVEGASTL 181 Query: 182 QVLWKVYVPLAKPIYLAFGLVSISTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVD 241 Q+LWKVYVPL KP+YLA+ LVSIS HWNNFLWPLIVTN+ SRPLTVGLQVFSST+QGVD Sbjct: 182 QILWKVYVPLGKPVYLAYALVSISYHWNNFLWPLIVTNTTNSRPLTVGLQVFSSTEQGVD 241 Query: 242 WSIITSATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 277 W+IIT+ATLMTS PLL+AFLLFQRQFVQSFMRAGI+ Sbjct: 242 WAIITAATLMTSGPLLVAFLLFQRQFVQSFMRAGIK 277